The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	0	59496	4111050	tRNA,transposase	Natrialba_phage(12.5%)	52	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46248_46797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46768_47005_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47132_48026_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49195_50443_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50439_51054_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51189_52140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52182_53439_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54670_55405_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55410_56001_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56025_56715_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56711_57473_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57552_58452_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|58545_59496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	70133	123119	4111050	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
WP_005012808.1|70133_71084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71177_71492_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72684_74592_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74753_75374_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75405_75987_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76075_76327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76328_77171_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77276_78686_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78682_79633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79707_80652_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80648_82523_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83870_84575_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84571_85744_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85939_86533_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86529_87762_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87779_89039_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89062_90151_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90158_91259_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91262_91838_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91841_92894_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93024_94032_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94033_95320_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95336_95492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95516_96320_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96316_97183_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97257_98388_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98387_99227_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100159_100762_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100791_101445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101577_102834_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102881_103781_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103856_104132_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104139_104802_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104863_105865_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105879_106428_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106485_107382_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107378_108440_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108475_109426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110324_111518_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111599_112229_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112290_112974_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112983_114666_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114953_115301_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115391_115709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115991_117008_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117082_117883_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117879_118755_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118765_120058_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120100_121141_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121246_122068_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122168_123119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	165936	221193	4111050	tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	46	NA	NA
WP_005015810.1|165936_166887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815889.1|169209_169839_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170121_171552_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171585_172215_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172263_173871_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173895_174579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174660_175137_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929765.1|175343_176294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177409_177937_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178028_178844_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178904_179639_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179676_181755_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182004_182277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182378_183464_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183467_185372_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929670.1|189066_189630_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189637_190060_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190087_190507_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190535_191009_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191108_191606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191760_194031_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194079_195312_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|195410_196361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812004.1|196385_196724_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_050818159.1|196767_198411_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.4	1.9e-86
WP_010931083.1|198449_199796_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|199903_201325_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|201394_201979_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|202081_203032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|203130_204216_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|204313_204724_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|205339_207253_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|207388_210001_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_010930070.1|210002_210737_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.6	3.8e-63
WP_003810851.1|210900_212082_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|212078_212291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|212287_213268_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|213313_214141_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|214290_216105_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|216159_216543_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|216539_217490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|217601_217853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|218358_219477_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|219596_219809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|219968_220190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|220242_221193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	241948	296079	4111050	transposase,holin	Ostreococcus_lucimarinus_virus(25.0%)	41	NA	NA
WP_005012067.1|241948_242899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|244062_245778_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|245788_246280_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|246352_247369_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|247536_248316_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|248334_248862_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|249155_249425_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|249515_251675_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|251795_252515_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|252511_253462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|253602_254820_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|254813_255425_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|256058_257036_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|257179_257926_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|257947_258394_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|259181_261413_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|261435_262236_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|262517_263750_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|263860_264850_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|264880_266269_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|267867_268851_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931561.1|269047_270064_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|270260_271085_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|271162_272086_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|272256_273408_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|273411_274443_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|274571_275543_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|275567_277652_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|277718_278711_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|278819_280154_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|280179_282192_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|282188_284237_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|284340_284988_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|285128_285623_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|285666_286338_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|286352_287846_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|287842_290956_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|290968_292075_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|292198_292867_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|293087_294038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|294120_296079_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 5
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	334522	407683	4111050	transposase	Klosneuvirus(16.67%)	56	NA	NA
WP_010930048.1|334522_335473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|335469_336489_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|336498_339207_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|339354_340011_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_014486111.1|340109_341060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|341207_342101_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|342300_343995_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|344029_344956_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|345024_346122_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|346140_347004_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|347015_347798_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|347794_348913_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|348909_350442_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|350482_351490_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|351634_352357_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|352372_353395_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|353711_354446_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930004.1|356271_357024_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|357068_358025_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|358113_358680_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|358687_359548_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|359577_360306_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|360337_361021_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|361858_362773_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|362837_363746_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|363836_365261_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|365262_366585_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|366581_368720_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|368797_373918_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|374018_374327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|374396_374954_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|374969_376451_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|378621_379959_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|379993_381991_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|382008_384057_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|384187_385054_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|385322_386288_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|386402_387551_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|387975_388287_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|388320_388581_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|388730_389864_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|389934_391071_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|391236_392031_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|392093_392537_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|392652_393603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|393704_394133_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|394205_396401_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|396622_397573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|397532_398057_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|398188_399160_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|399279_401724_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|401739_402330_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|402573_403524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|403681_404947_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|404980_406078_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|406732_407683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	418970	520131	4111050	tail,tRNA,terminase,protease,transposase	uncultured_Caudovirales_phage(14.29%)	106	NA	NA
WP_005012067.1|418970_419921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|420652_421030_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|421014_421716_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|421859_422552_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|422551_423655_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|423764_426137_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|426133_427693_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|427717_428515_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|428546_429692_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|429796_431239_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|431241_432471_-	spore maturation protein	NA	NA	NA	NA	NA
WP_010929584.1|434608_435559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|436688_437246_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|437221_437572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|437740_438535_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|438531_439581_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|439580_440270_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|440356_440854_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|440885_442202_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|442218_443193_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|443229_443688_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|443687_444368_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|444370_444799_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|444851_446582_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|446647_447220_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|447200_447887_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|448242_448914_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|449242_449464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|449463_449745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|449741_450257_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|450256_450808_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|450786_451029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|451033_451846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|451845_452109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|452149_452347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|452327_452744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|452748_456705_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|456697_457087_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|457083_457617_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|457684_458044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|458053_460666_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|460691_460982_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|460999_461329_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|461338_461857_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|462111_462612_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|462619_463042_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|463038_463437_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|463433_463829_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|463828_464029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|464030_464513_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|464575_464827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|465501_466452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|467929_468532_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|468654_468897_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|468902_469958_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|469986_471405_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|471407_472685_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_033469562.1|472671_473157_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|473796_474747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|475003_475693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|475685_475937_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|476491_477103_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|477174_477381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|477632_478583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|478681_479755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050818153.1|479922_480717_+	dioxygenase	NA	NA	NA	NA	NA
WP_010925795.1|480756_481281_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|481273_483016_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|483225_483984_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|483986_484694_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|484710_485592_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|485602_486361_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|486329_487085_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|487154_488573_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|488594_489245_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|489378_489714_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|489802_490753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|490829_492650_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|492654_493728_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|493850_494819_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|494892_495804_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|495822_496395_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|496475_497024_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|497023_498613_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|498682_498922_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|498962_499988_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_010931463.1|501330_501783_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|501792_503133_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_050818144.1|503449_504487_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|504868_505228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|505311_506253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|506327_507278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|507571_508666_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|508747_509629_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|509650_510490_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|510565_512083_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|512179_513280_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|513296_513719_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|513741_513954_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|514000_514921_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|515103_515853_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|515855_516185_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|516391_517825_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|517836_518220_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|518281_519082_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|519180_520131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	679747	726596	4111050	transposase	Lake_Baikal_phage(25.0%)	39	NA	NA
WP_005012067.1|679747_680698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|680814_681882_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_050818157.1|681957_685086_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|685593_686559_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|686561_687233_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|687389_688349_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|688356_689019_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|689015_689966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930176.1|690064_691015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|691136_692390_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|692367_693330_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|693461_693956_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|693955_695188_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|695933_696215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|696201_697188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|697331_697736_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|697877_701264_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|701294_702758_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|702778_704395_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|704480_705140_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|705169_705610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|706120_706324_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|706499_707405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|707503_708454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|708552_709503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|711284_712478_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|712543_713572_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|713598_714771_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|714896_715874_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|715884_716856_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|716922_717708_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|717700_718933_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|719128_719884_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|719994_720513_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|722301_723702_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|723801_724146_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|724234_724705_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|725115_725514_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|725645_726596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	825584	943336	4111050	protease,tRNA,transposase	Bacillus_phage(12.5%)	98	NA	NA
WP_005013747.1|825584_826535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|826657_827386_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|827482_828661_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|828657_829491_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|829527_830268_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|830387_831563_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|831559_832513_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|832526_832928_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|832920_833526_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|833613_833778_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|833894_834743_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|834739_835393_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|835409_836693_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|836932_838558_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|838651_839053_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|839077_839512_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|839513_841163_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929730.1|842364_843228_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|846591_847296_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|847289_848084_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|848080_849046_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|849049_849970_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|850066_851230_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|851452_852343_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|852346_852850_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|852892_853891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|853887_854838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|854926_855214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|855405_856356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|856415_856976_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|858478_859360_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|859473_860676_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|860804_862664_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|862741_863551_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|863621_864623_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|864654_865515_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|865714_866719_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|866715_868302_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|868310_869237_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|869259_869886_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|869984_870935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|870931_872068_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|872121_872898_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|872922_873381_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|873520_874162_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_005013747.1|875577_876528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247426.1|876677_877532_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|877690_878302_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|878311_878761_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|879279_879420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|879427_879589_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|879866_880817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|881860_882139_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|883281_883830_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_005013747.1|883883_884834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929715.1|884941_886621_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|886617_888369_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|888365_888491_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|888504_889659_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010929713.1|889674_891294_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|891377_891923_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|892482_893433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_050818140.1|894163_895141_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|895154_896279_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929709.1|898146_899046_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|899110_900094_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|900229_901210_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|901226_902618_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|902769_903306_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|903236_904622_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|904764_905403_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_023997118.1|905489_907379_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	33.1	1.3e-78
WP_003814337.1|907375_908317_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|908422_909472_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|909724_910426_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|910422_911121_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|911121_912477_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|912473_912965_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|912983_913940_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|915350_917453_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|917623_918667_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|918710_919454_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|920475_920886_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|921835_922633_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|922731_923682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|923678_924629_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|924715_925666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|925780_926782_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|926872_927439_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|927757_929671_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|929712_931143_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|931255_932668_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|932684_933380_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929687.1|934572_935472_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|935626_936175_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|936213_936933_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|937004_939947_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|940540_943336_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 9
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	1042055	1099807	4111050	transposase	Salmonella_phage(28.57%)	50	NA	NA
WP_010931070.1|1042055_1043006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1046752_1047364_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1047586_1049047_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1049143_1050736_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1051089_1051347_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1051348_1052689_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1052784_1053474_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1053486_1054917_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1056641_1057463_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1057473_1059045_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1059073_1060051_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1060077_1060881_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_024001108.1|1060877_1061672_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1061679_1062915_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1062907_1063342_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931031.1|1064614_1066342_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1066453_1067812_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1068104_1069055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1069095_1070166_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1070188_1071067_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1071238_1072210_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1072372_1073215_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1073376_1074057_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1074050_1075220_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1075216_1076248_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1076291_1077533_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1077567_1079100_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1079180_1079804_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1079834_1080446_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1080481_1080952_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|1081141_1081375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1081382_1082387_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1082423_1083938_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1083941_1084901_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1084929_1085733_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1085734_1087369_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1087452_1088514_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1088712_1088982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1088985_1089510_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1089925_1090876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1090872_1091907_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1092015_1092654_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1092948_1093176_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1093298_1094012_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1094256_1095207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1095310_1095592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1095706_1097155_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929584.1|1097265_1098216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1098212_1098662_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1098856_1099807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	1188449	1241627	4111050	tRNA,transposase	Salmonella_phage(22.22%)	45	NA	NA
WP_005013747.1|1188449_1189400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1189566_1189920_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1189932_1190295_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1190336_1190762_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1190964_1192221_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1192419_1193400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1193549_1194791_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1194889_1195840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1195848_1196544_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1199364_1199964_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1199974_1202140_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1202163_1203948_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1203947_1204037_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1204731_1205004_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1205003_1207070_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1207066_1208017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1208132_1208465_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010930948.1|1209133_1210093_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1210134_1212495_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1212494_1213127_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1213228_1214569_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1214615_1215971_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1216096_1216741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1216685_1217003_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1217275_1217791_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1217884_1218046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1218061_1218817_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1219155_1219362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1219369_1220029_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1220323_1222528_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1222638_1223862_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1223984_1224959_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1225026_1226220_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1226234_1227035_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1227031_1228888_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1228884_1229490_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1229508_1230894_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1231619_1232846_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1232934_1233717_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|1233815_1234766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1234792_1235566_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1235577_1236819_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1238600_1239551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1239582_1240680_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1240676_1241627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	1283476	1351561	4111050	tRNA,transposase	Streptococcus_virus(11.11%)	60	NA	NA
WP_010930416.1|1283476_1283965_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1284082_1284661_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1284766_1285135_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1285233_1286184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1286190_1287303_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1287989_1289192_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1289227_1289374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1289395_1292056_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1292068_1295473_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1296140_1298366_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1298412_1298739_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1298789_1299398_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1299496_1300447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1300516_1301281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1301277_1301877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1301980_1302832_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1302891_1303518_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010929591.1|1303514_1304465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1304563_1305676_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_024000672.1|1305665_1306667_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1306772_1308284_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1308280_1309585_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1309696_1310257_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1310524_1311079_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1311534_1311750_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1312004_1314602_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1314598_1315786_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_062826574.1|1316054_1316279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930436.1|1316443_1317058_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1317146_1318274_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1318285_1319191_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1320083_1321034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1321215_1321968_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1322036_1322696_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1322692_1323421_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1323433_1325713_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1325737_1325941_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1325982_1326615_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1326750_1327668_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1327664_1328378_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1328615_1329386_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1329390_1329990_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1330234_1331725_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1331783_1332068_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1332205_1332361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1332633_1333560_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1333696_1334437_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1334603_1335980_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1336161_1337067_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1338718_1340521_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1340647_1341289_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1341387_1342338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1342359_1343580_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1343765_1345178_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1345241_1346309_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1346308_1347796_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1347805_1348750_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1348909_1349608_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1349685_1350591_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1350610_1351561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	1387510	1443100	4111050	transposase	Brazilian_cedratvirus(25.0%)	46	NA	NA
WP_010931070.1|1387510_1388461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1388519_1389293_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1389285_1390842_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1390838_1391789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1393115_1393718_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1393957_1394659_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1394652_1395435_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1395619_1396570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1396668_1397406_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1397595_1398354_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1398400_1399390_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1399567_1400536_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1402075_1403044_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1403052_1403994_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1404467_1405478_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1405468_1406983_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1406979_1408326_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1408328_1409363_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1409412_1411038_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1411590_1412541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1412645_1413593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1413646_1415461_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1415453_1416128_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1416257_1419332_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1419345_1419645_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1419959_1420583_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1420826_1421696_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1421673_1422618_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1422703_1423630_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1423742_1424522_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1424512_1425709_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1425739_1426690_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1426911_1427601_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1427665_1428421_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1428472_1429465_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1429474_1430428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1430543_1431506_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1432907_1433336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1433332_1434283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1434576_1435314_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_019249653.1|1436927_1437308_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1439027_1439999_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1440012_1440726_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1440730_1441648_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1441754_1442051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1442149_1443100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	1450396	1513362	4111050	tRNA,transposase	Klosneuvirus(12.5%)	55	NA	NA
WP_005013747.1|1450396_1451347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1451390_1451933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1452030_1452879_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_004568494.1|1452871_1453378_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930515.1|1453374_1454376_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1454388_1455183_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1455231_1457133_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1457129_1457753_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1457879_1459004_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1459384_1460989_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1461144_1461921_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1462005_1463004_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1463000_1463774_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_005012067.1|1464758_1465709_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1465746_1466334_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1466351_1466735_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1468094_1469387_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1469521_1470562_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1470659_1471676_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1471943_1472591_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1472716_1473475_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1473459_1474239_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1474256_1475141_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_004568488.1|1475137_1475917_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1476021_1476621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1476909_1477662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1477780_1479181_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1479204_1479603_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1479778_1479979_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1480117_1480846_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1480979_1482395_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1482398_1483262_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1483274_1484024_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1484206_1486222_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1486203_1486872_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1487646_1488597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1488745_1489084_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1489141_1489303_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1489334_1489535_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1489800_1492374_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1492444_1494994_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1497544_1498033_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1498124_1499276_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1499329_1500151_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1500189_1501419_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1501547_1501988_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1502098_1503049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1503045_1503519_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1503680_1504619_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1504620_1505829_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1505933_1506440_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1506442_1509304_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1509293_1510259_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1510318_1512313_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930179.1|1512411_1513362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	1564611	1623881	4111050	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1564611_1565562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1565686_1566496_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929591.1|1566696_1567647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1567745_1568696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1569969_1571187_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1572243_1573146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1573222_1574095_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1574225_1574594_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1574651_1575698_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1575893_1577150_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1577154_1578492_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_050818134.1|1578641_1579598_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1579700_1580633_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1580748_1581069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1581061_1581421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1581468_1583043_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1583095_1584040_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1584057_1584888_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1584880_1586515_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1586511_1587867_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1588773_1590351_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1590354_1591629_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1591726_1592101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1593816_1594950_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1594987_1595593_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1595589_1596408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1596479_1599104_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1599090_1599345_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1599411_1599993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1600296_1600557_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1600722_1601346_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1601345_1602119_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1602115_1603324_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1603349_1603823_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1603896_1604847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1604945_1606295_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1607060_1607816_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1607908_1610791_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1611113_1611539_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1611566_1612715_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1612711_1613218_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1613224_1614520_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1614578_1615865_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1615866_1616505_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1616507_1617668_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1617694_1619050_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1619053_1620124_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1620262_1620499_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1620586_1621693_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1621658_1622963_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1622981_1623881_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	1634121	1694621	4111050	transposase	Staphylococcus_phage(14.29%)	57	NA	NA
WP_005013747.1|1634121_1635072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1635271_1636357_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1636372_1637134_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1637130_1638090_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1638152_1638653_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1638685_1639429_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1639524_1639764_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1639777_1639930_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1640015_1641506_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1641597_1642536_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1642532_1642709_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1642711_1643374_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1644995_1645139_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1645135_1646110_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1646276_1647227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1647223_1648498_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1648601_1649795_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1649791_1650445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1650441_1651878_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1651865_1652225_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_154585107.1|1652971_1653133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1654143_1656009_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1656266_1657787_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1657874_1658525_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1659473_1660769_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1660790_1661675_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1661773_1662649_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1662638_1662995_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1663125_1664100_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1664229_1664409_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1664506_1665031_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1665041_1665878_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1665990_1666362_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1666358_1666910_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1666925_1668617_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1668665_1669346_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1669593_1670058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247659.1|1671168_1671816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1671889_1673707_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1673790_1674741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1675393_1676344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1676362_1676710_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1676738_1678178_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1678196_1678592_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1678766_1679375_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|1679387_1680206_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1680157_1681132_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1681160_1682222_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1682218_1684435_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1684448_1684907_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1685064_1685409_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1685565_1686471_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1686557_1687571_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930153.1|1689550_1690567_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1690709_1692062_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1692236_1692533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1693670_1694621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	2365191	2431691	4111050	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2365191_2366142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2366511_2367084_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2367086_2368097_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2368089_2368590_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2368600_2368942_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2368953_2369745_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2369761_2370031_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2370053_2370842_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2370888_2371905_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2372121_2373564_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2373742_2375362_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2375482_2377303_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2377381_2378914_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2378947_2380594_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2380663_2381686_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2381703_2382837_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2382839_2383529_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2383528_2384314_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2384357_2385122_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2385160_2386582_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2386647_2387352_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2387399_2387819_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2387831_2388239_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2388422_2389133_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2389259_2389550_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2389567_2390050_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2394555_2395710_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2396015_2397032_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2397278_2398067_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2398133_2398814_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2398810_2399581_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2399679_2400630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2400685_2401603_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2401613_2402792_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2402811_2403807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2405395_2406004_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2405991_2407032_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2407049_2408012_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2408008_2409202_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2409198_2409996_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2410021_2411008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2411026_2413066_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2413267_2413948_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2413961_2414873_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2414869_2415448_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2415586_2416492_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2416499_2419919_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2419906_2422507_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2423462_2424095_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2424488_2425247_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2425243_2426446_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2426633_2427584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2428491_2429637_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2429623_2430379_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2430495_2430675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2430740_2431691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	2594257	2637756	4111050	tRNA,transposase	Bacillus_phage(50.0%)	32	NA	NA
WP_005012067.1|2594257_2595208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2595306_2596188_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2596265_2597645_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2597683_2598529_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|2598544_2598889_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2598891_2599428_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|2599600_2600176_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2600278_2601016_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2601083_2602721_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2602828_2603584_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2603571_2604534_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2604635_2605436_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2605497_2607573_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2607737_2610113_+	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930211.1|2610193_2611549_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2613027_2613750_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2613804_2614788_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2614917_2615868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077070465.1|2615966_2616917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2617015_2617966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2617962_2618865_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2618952_2619711_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2619723_2620815_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2620912_2622340_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2622569_2623784_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2623829_2626700_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_005013747.1|2627024_2627975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930202.1|2630159_2630648_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2630773_2633470_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2633624_2635907_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2636083_2636707_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2636805_2637756_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	2659674	2773989	4111050	protease,tRNA,transposase,holin	uncultured_Mediterranean_phage(18.75%)	98	NA	NA
WP_010930190.1|2659674_2661195_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_003812436.1|2661522_2662155_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2662233_2664099_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2664095_2664890_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2664918_2666034_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2666938_2667817_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2667816_2668641_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_005012067.1|2668808_2669759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2669971_2672821_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2672802_2673531_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930181.1|2673671_2675135_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2675131_2675503_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2675520_2676834_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2676870_2677329_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_010930178.1|2678388_2679402_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2679541_2680528_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2680886_2681594_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_076879620.1|2682174_2683125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2683276_2683879_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2683897_2684530_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2684574_2684826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2684767_2686654_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2686672_2687515_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2687511_2688870_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2689090_2689885_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2690115_2691609_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2691844_2693926_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2694120_2695161_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2695295_2696312_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2696333_2697191_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2697235_2698012_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005012067.1|2698379_2699330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2699428_2700379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2700405_2700870_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2702076_2704365_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2704481_2705354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2705396_2706551_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2706585_2707416_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2707499_2709044_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2709086_2709446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2709447_2709861_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2709901_2710219_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2710303_2711020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2711283_2712705_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_062826652.1|2715752_2716769_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2717104_2717746_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2717836_2719273_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2719430_2720504_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2720500_2721637_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2721780_2722125_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2722191_2724072_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2724121_2725057_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_062826590.1|2725389_2726406_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2727343_2728771_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2728767_2729790_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2729779_2730253_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2730393_2731281_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2731277_2732921_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2732917_2733967_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|2734755_2735772_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2735871_2736504_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2736512_2736902_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2736954_2738007_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2738422_2739373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2739471_2740422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930145.1|2740968_2742675_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2742748_2743249_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2743263_2745321_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|2745347_2745641_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|2745742_2746690_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|2746702_2747578_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|2747698_2748259_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|2748293_2748617_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|2749052_2749790_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|2750088_2751039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|2751282_2751546_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|2751619_2751901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|2751917_2752778_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|2752774_2753110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|2753163_2753814_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_010930140.1|2753998_2755474_+	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_019247197.1|2755494_2756439_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|2756484_2756802_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003819814.1|2757919_2758405_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|2758423_2758972_+	DinB family protein	NA	NA	NA	NA	NA
WP_023994624.1|2759003_2759156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|2759248_2760382_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|2760485_2761127_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|2761281_2763630_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|2763626_2764565_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|2764590_2765781_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|2765777_2766551_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|2766580_2767774_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|2767891_2768902_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|2768919_2770956_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|2771150_2771891_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|2771989_2772940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2773038_2773989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	2819398	2874760	4111050	transposase	Streptococcus_phage(22.22%)	52	NA	NA
WP_010929591.1|2819398_2820349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|2820447_2821032_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|2821066_2822056_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|2822052_2822994_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|2822990_2824211_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|2824253_2824568_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|2824759_2825119_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|2825120_2826836_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|2827023_2827695_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|2827709_2829038_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|2829034_2829934_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|2830020_2831106_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|2831098_2832232_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|2832231_2834913_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|2835283_2835865_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|2835990_2836716_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|2836712_2837390_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|2837605_2838787_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|2839559_2839742_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010929584.1|2839771_2840722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|2840851_2841244_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|2841520_2842432_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|2842556_2843531_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2843527_2844478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2844612_2845719_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2845729_2846827_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2846971_2848177_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2848183_2848705_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2848701_2849193_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2849189_2849441_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2849421_2849907_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2850042_2853504_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2853521_2854406_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2854415_2854847_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2855093_2855597_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2855674_2857075_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2857149_2858025_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2858021_2859029_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2859496_2859802_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2859892_2860483_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930320.1|2860673_2861690_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2861881_2864218_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2864300_2864735_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2864833_2865784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2865780_2866575_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2866606_2867311_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2867385_2868186_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2868182_2868590_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2868586_2869228_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2869220_2871221_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2872481_2873813_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2873809_2874760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	2889237	2952789	4111050	protease,transposase	uncultured_Mediterranean_phage(28.57%)	52	NA	NA
WP_010930800.1|2889237_2890188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_024000608.1|2890518_2894340_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894496_2895165_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2895169_2896843_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896861_2898181_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2898185_2900501_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900556_2902725_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2902721_2907911_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2908000_2908315_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908542_2908788_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908882_2909401_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909500_2910706_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910821_2912219_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2912335_2912914_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912986_2914378_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914545_2915496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915776_2916397_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2916393_2916807_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916803_2917847_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917902_2918091_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2918100_2918865_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918955_2919612_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919703_2920462_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920487_2922089_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2922289_2923294_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2923394_2923658_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923775_2924552_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_010931130.1|2927427_2928540_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2928596_2929547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2929755_2929977_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2930190_2931597_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2931593_2932898_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2932894_2934082_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2934298_2934751_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2934753_2935218_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813085.1|2937080_2938058_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2938137_2939106_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2939126_2940500_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2940496_2941333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2941449_2941905_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2941920_2942193_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2942285_2942609_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2942656_2943037_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2943256_2944054_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2944210_2946073_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2946122_2947034_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2947038_2947305_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2947391_2948261_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2948396_2949362_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2949532_2950543_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2950690_2951842_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_005012067.1|2951838_2952789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	2959932	3014163	4111050	transposase	Planktothrix_phage(16.67%)	48	NA	NA
WP_010929591.1|2959932_2960883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2961003_2961900_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964177_2966403_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966567_2967656_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967612_2968266_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968313_2969111_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969642_2970593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2970667_2971822_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971878_2972829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972927_2973233_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973261_2973696_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973697_2974942_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974938_2975649_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975663_2976575_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976937_2977342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977338_2977797_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2977803_2978712_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2978708_2979575_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979561_2980389_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2980399_2981527_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982604_2983843_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983884_2985147_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985153_2985906_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985957_2986143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2986418_2986883_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986914_2987574_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987718_2989827_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|2989823_2990774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990877_2991498_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2991589_2992342_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993476_2994601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994646_2995015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995256_2996207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997242_2997785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930176.1|2998170_2999121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2999117_3000083_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000152_3000989_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001501_3002611_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3002672_3003623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3003815_3004598_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3004611_3005361_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3005388_3006735_-	MFS transporter	NA	NA	NA	NA	NA
WP_050681005.1|3006760_3007690_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3007805_3008711_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3008728_3009928_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3010000_3010693_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3010741_3013168_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3013212_3014163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	3126237	3190069	4111050	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	54	NA	NA
WP_005015810.1|3126237_3127188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3127333_3128458_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3128663_3129227_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3130221_3130704_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3130861_3132109_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3132328_3132985_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3133020_3134250_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|3134517_3135468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3135559_3136975_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3136980_3138117_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3138186_3138558_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3138645_3139392_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3139428_3140493_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3140681_3141074_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3141083_3141512_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3141807_3142905_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3143246_3144611_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3144669_3145221_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3145234_3145909_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3147165_3147975_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3147977_3148814_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3148828_3149521_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3149532_3149922_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3150027_3151416_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3151532_3153029_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3154097_3155048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814917.1|3157599_3159045_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3159048_3160236_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3160304_3160814_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3161015_3161468_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_192855352.1|3161440_3162007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247415.1|3162029_3165092_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3165397_3168325_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3168346_3169543_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3169860_3170388_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|3170526_3171102_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3171109_3172573_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3172583_3173711_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|3173840_3174968_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3174993_3175233_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3175513_3176017_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3176189_3177131_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3177142_3178240_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3179205_3180552_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3180561_3181011_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3181100_3181535_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3181613_3182162_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3182244_3183615_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3183625_3184219_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3184290_3186174_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3186211_3187111_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3187107_3187971_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_077070127.1|3188069_3189020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3189118_3190069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	3238212	3263154	4111050	tRNA,transposase,holin	Bovine_alphaherpesvirus(20.0%)	22	NA	NA
WP_005012808.1|3238212_3239163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3239607_3239919_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3239918_3240449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3240611_3241562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3241660_3242611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3242900_3243365_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3243379_3244885_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3245141_3246746_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3246801_3247707_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3248147_3249098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|3249236_3249989_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|3250227_3251952_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|3251971_3253231_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|3253245_3254340_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|3254336_3256463_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|3256475_3257156_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|3257433_3258807_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|3258808_3259828_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|3259891_3260863_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|3260927_3261878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|3261976_3262819_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|3262818_3263154_-|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 24
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	3281577	3335707	4111050	protease,tRNA,integrase,transposase	Erwinia_phage(25.0%)	40	3318554:3318572	3338442:3338460
WP_010931291.1|3281577_3282117_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|3282138_3283473_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|3283486_3283792_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|3284216_3284798_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3284879_3285830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3286142_3287621_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3287627_3288737_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3288748_3289429_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3289450_3290206_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3290341_3291226_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3291313_3291895_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3292155_3292455_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3292606_3293086_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3293805_3295242_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3295238_3295742_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3295757_3296708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3297235_3298009_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3298141_3299152_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3299303_3300959_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3301013_3301355_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3301368_3302808_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3302940_3303756_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3303949_3304900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3306287_3307235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3307461_3308202_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3308287_3309238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3310679_3312251_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3312583_3314437_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3314481_3317046_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3317464_3318415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3318554:3318572	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274087.1|3321280_3321775_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_005013747.1|3321791_3322742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_024001095.1|3322925_3324137_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3324152_3327104_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931303.1|3327105_3330225_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3330372_3331419_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3331760_3332888_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3333167_3334259_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3334331_3335114_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931308.1|3335110_3335707_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3338442:3338460	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
>prophage 25
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	3384645	3438386	4111050	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_077598831.1|3384645_3385596_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386000_3386645_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386669_3387254_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387354_3387972_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387974_3389690_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389686_3389995_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390011_3390629_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390673_3390976_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391076_3391931_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392118_3392343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392512_3392785_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393202_3393610_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393979_3394774_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394874_3396110_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396178_3397195_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397206_3398583_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398579_3399776_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399772_3401311_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401307_3402567_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404507_3405458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406224_3407319_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407311_3408646_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408599_3409283_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409308_3410472_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3410468_3411470_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411469_3412342_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412338_3413088_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413084_3413876_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413872_3415012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415287_3416073_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416106_3416889_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416892_3417282_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3418421_3419285_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3419320_3420409_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3420405_3421356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421709_3424688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425614_3426493_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3428441_3429392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429388_3429856_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429898_3430669_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3430689_3431490_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431500_3432910_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433004_3433790_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3434029_3435046_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435153_3435546_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435683_3436364_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436368_3437340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_077070462.1|3437435_3438386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	3444540	3503840	4111050	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3444540_3446304_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3446415_3447294_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447406_3448222_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448225_3448477_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010930525.1|3448561_3449578_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449908_3450130_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452490_3453408_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453905_3455114_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455193_3456765_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456882_3457818_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458006_3458951_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459518_3465236_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465241_3466369_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3466424_3467051_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3467322_3468339_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3468434_3469145_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469141_3470131_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470226_3471858_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471860_3472598_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472753_3473626_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3473894_3475115_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475111_3475771_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475842_3476475_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476504_3477023_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477033_3478143_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478189_3479044_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479045_3479948_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481170_3482121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3483877_3484867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3484863_3485022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3485042_3485831_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485827_3486859_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486877_3487441_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487496_3489017_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489280_3489985_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3489992_3490730_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490835_3491210_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491252_3492542_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492538_3493708_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493704_3494544_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494603_3495539_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495551_3496502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496600_3497563_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497594_3497954_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498078_3498981_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498982_3500755_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500789_3501566_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502889_3503840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	3518778	3587931	4111050	tRNA,transposase	Planktothrix_phage(10.0%)	55	NA	NA
WP_005012808.1|3518778_3519729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519857_3520991_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521034_3521940_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521942_3523643_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523639_3524560_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524567_3525545_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525603_3526638_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3528612_3528849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528975_3529839_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529927_3530749_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530828_3531566_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3531562_3532555_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3532668_3533331_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533375_3534524_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3536847_3537798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929965.1|3540270_3541197_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|3541215_3541671_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|3542522_3543314_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|3543345_3543966_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|3543962_3544592_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|3544604_3545213_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|3545209_3546199_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|3546304_3547519_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|3549470_3550421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|3551854_3553141_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|3553306_3553615_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|3553615_3554281_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|3554321_3556112_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|3556224_3557085_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|3557081_3558287_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|3558283_3559168_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|3560684_3561119_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|3561081_3562080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|3562191_3563337_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|3563411_3564740_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|3564773_3565364_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|3565653_3566448_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|3567617_3568352_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|3568358_3569225_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_029443756.1|3571055_3571553_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|3571849_3572800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815183.1|3573987_3574860_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574856_3575807_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575905_3576856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3576960_3577191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3577317_3577707_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3577723_3580105_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3580097_3581474_-	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3581489_3582485_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3582503_3583496_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3583736_3584297_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3584301_3584628_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3584664_3585477_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3585487_3586570_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3586656_3587931_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
>prophage 29
NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4111050	4033221	4086653	4111050	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_014486111.1|4033221_4034172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034341_4035568_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035767_4036634_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036626_4037589_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037689_4038640_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038738_4039689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039685_4041179_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041175_4044283_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044279_4047348_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047344_4048595_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4048775_4049537_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4049569_4050220_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4050222_4051062_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051302_4052046_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4052128_4052476_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052573_4053416_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053460_4054348_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054374_4054563_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054660_4056118_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056104_4057631_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057649_4058117_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4058116_4059139_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4059259_4059979_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4060054_4061155_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061156_4062347_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062466_4063483_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063801_4064473_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064469_4065378_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065589_4066237_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4070088_4071165_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071175_4071985_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072074_4072848_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010929591.1|4073030_4073981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4074079_4075030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4074918_4075941_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4075930_4077085_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4077124_4078537_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4078661_4079528_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4079529_4080354_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4080350_4081112_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4081192_4081879_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4082052_4083060_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4083056_4083836_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4083893_4085156_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4085702_4086653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
