assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001605135.1_ASM160513v1	NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	1	724792-724885	1	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG	NA,NA	NA|391aa|up_9|NZ_CP010961.1_713598_714771_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_8|NZ_CP010961.1_714896_715874_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_7|NZ_CP010961.1_715884_716856_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_6|NZ_CP010961.1_716922_717708_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_5|NZ_CP010961.1_717700_718933_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_4|NZ_CP010961.1_719128_719884_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_3|NZ_CP010961.1_719994_720513_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|467aa|up_2|NZ_CP010961.1_722301_723702_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|NZ_CP010961.1_723801_724146_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|NZ_CP010961.1_724234_724705_+	pfam00582, Usp, Universal stress protein family	NA|133aa|down_0|NZ_CP010961.1_725115_725514_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|317aa|down_1|NZ_CP010961.1_725645_726596_-	pfam00665, rve, Integrase core domain	DEDDh|245aa|down_2|NZ_CP010961.1_729040_729775_+	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|60aa|down_3|NZ_CP010961.1_730184_730364_+	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|438aa|down_4|NZ_CP010961.1_730554_731868_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|504aa|down_5|NZ_CP010961.1_731883_733395_-	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|402aa|down_6|NZ_CP010961.1_733391_734597_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|326aa|down_7|NZ_CP010961.1_734792_735770_-	pfam00665, rve, Integrase core domain	NA|165aa|down_8|NZ_CP010961.1_735862_736357_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|353aa|down_9|NZ_CP010961.1_736486_737545_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1
GCF_001605135.1_ASM160513v1	NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	2	908328-908412	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG	NA,NA	NA|375aa|up_9|NZ_CP010961.1_895154_896279_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|300aa|up_8|NZ_CP010961.1_898146_899046_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|NZ_CP010961.1_899110_900094_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|NZ_CP010961.1_900229_901210_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|NZ_CP010961.1_901226_902618_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|NZ_CP010961.1_902769_903306_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|NZ_CP010961.1_903236_904622_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|NZ_CP010961.1_904764_905403_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|NZ_CP010961.1_905489_907379_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|NZ_CP010961.1_907375_908317_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|NZ_CP010961.1_908422_909472_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|NZ_CP010961.1_909724_910426_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|NZ_CP010961.1_910422_911121_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|NZ_CP010961.1_911121_912477_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|NZ_CP010961.1_912473_912965_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|NZ_CP010961.1_912983_913940_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|701aa|down_6|NZ_CP010961.1_915350_917453_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|348aa|down_7|NZ_CP010961.1_917623_918667_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_8|NZ_CP010961.1_918710_919454_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|137aa|down_9|NZ_CP010961.1_920475_920886_-	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase
GCF_001605135.1_ASM160513v1	NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	3	1552825-1552952	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG	Orphan	AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG	NA,NA	NA|134aa|up_9|NZ_CP010961.1_1541787_1542189_+	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|268aa|up_8|NZ_CP010961.1_1542202_1543006_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|144aa|up_7|NZ_CP010961.1_1543002_1543434_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|386aa|up_6|NZ_CP010961.1_1543430_1544588_+	PRK06158, PRK06158, thiolase; Provisional	NA|259aa|up_5|NZ_CP010961.1_1544609_1545386_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|223aa|up_4|NZ_CP010961.1_1547598_1548267_+	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|214aa|up_3|NZ_CP010961.1_1548259_1548901_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|244aa|up_2|NZ_CP010961.1_1548935_1549667_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|71aa|up_1|NZ_CP010961.1_1549684_1549897_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|317aa|up_0|NZ_CP010961.1_1550467_1551418_+	pfam00665, rve, Integrase core domain	NA|217aa|down_0|NZ_CP010961.1_1552975_1553626_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|401aa|down_1|NZ_CP010961.1_1553754_1554957_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|679aa|down_2|NZ_CP010961.1_1555034_1557071_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|164aa|down_3|NZ_CP010961.1_1557323_1557815_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|171aa|down_4|NZ_CP010961.1_1558030_1558543_+	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR	NA|404aa|down_5|NZ_CP010961.1_1558560_1559772_+	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|137aa|down_6|NZ_CP010961.1_1559809_1560220_+	PRK11325, PRK11325, scaffold protein; Provisional	NA|108aa|down_7|NZ_CP010961.1_1560221_1560545_+	TIGR02011, Protein_yfhF	NA|171aa|down_8|NZ_CP010961.1_1560547_1561060_+	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB	NA|621aa|down_9|NZ_CP010961.1_1561189_1563052_+	PRK05183, hscA, chaperone protein HscA; Provisional
GCF_001605135.1_ASM160513v1	NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	4	2648438-2648554	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG	Orphan	TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	34	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG	NA,NA	NA|163aa|up_9|NZ_CP010961.1_2630159_2630648_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|899aa|up_8|NZ_CP010961.1_2630773_2633470_+	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional	NA|761aa|up_7|NZ_CP010961.1_2633624_2635907_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|208aa|up_6|NZ_CP010961.1_2636083_2636707_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|317aa|up_5|NZ_CP010961.1_2636805_2637756_+	pfam00665, rve, Integrase core domain	NA|185aa|up_4|NZ_CP010961.1_2637802_2638357_-	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|282aa|up_3|NZ_CP010961.1_2638424_2639270_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|323aa|up_2|NZ_CP010961.1_2639339_2640308_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|288aa|up_1|NZ_CP010961.1_2640307_2641171_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|1309aa|up_0|NZ_CP010961.1_2644003_2647930_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|1077aa|down_0|NZ_CP010961.1_2648665_2651896_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_1|NZ_CP010961.1_2652177_2653005_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_2|NZ_CP010961.1_2653038_2653734_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_3|NZ_CP010961.1_2653726_2655007_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_4|NZ_CP010961.1_2655016_2655994_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_5|NZ_CP010961.1_2655975_2657676_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|368aa|down_6|NZ_CP010961.1_2657778_2658883_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_7|NZ_CP010961.1_2658912_2659668_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|507aa|down_8|NZ_CP010961.1_2659674_2661195_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|211aa|down_9|NZ_CP010961.1_2661522_2662155_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain
GCF_001605135.1_ASM160513v1	NZ_CP010961	Bordetella pertussis strain H375 chromosome, complete genome	5	3435043-3435152	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG	Orphan	TTGACTGCCAAGACGGTATCTGTCCCC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG	NA,NA	NA|363aa|up_9|NZ_CP010961.1_3419320_3420409_+	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs	NA|317aa|up_8|NZ_CP010961.1_3420405_3421356_-	pfam00665, rve, Integrase core domain	NA|993aa|up_7|NZ_CP010961.1_3421709_3424688_+	pfam17936, Big_6, Bacterial Ig domain	NA|293aa|up_6|NZ_CP010961.1_3425614_3426493_+	pfam00487, FA_desaturase, Fatty acid desaturase	NA|317aa|up_5|NZ_CP010961.1_3428441_3429392_+	pfam00665, rve, Integrase core domain	NA|156aa|up_4|NZ_CP010961.1_3429388_3429856_-	PRK00203, rnhA, ribonuclease H; Reviewed	NA|257aa|up_3|NZ_CP010961.1_3429898_3430669_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|267aa|up_2|NZ_CP010961.1_3430689_3431490_+	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|470aa|up_1|NZ_CP010961.1_3431500_3432910_+	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|262aa|up_0|NZ_CP010961.1_3433004_3433790_+	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI	NA|131aa|down_0|NZ_CP010961.1_3435153_3435546_-	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|227aa|down_1|NZ_CP010961.1_3435683_3436364_+	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|324aa|down_2|NZ_CP010961.1_3436368_3437340_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|317aa|down_3|NZ_CP010961.1_3437435_3438386_-	pfam00665, rve, Integrase core domain	NA|234aa|down_4|NZ_CP010961.1_3439890_3440592_+	PRK09468, ompR, osmolarity response regulator; Provisional	NA|475aa|down_5|NZ_CP010961.1_3440591_3442016_+	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|352aa|down_6|NZ_CP010961.1_3442032_3443088_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|447aa|down_7|NZ_CP010961.1_3443084_3444425_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|588aa|down_8|NZ_CP010961.1_3444540_3446304_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|293aa|down_9|NZ_CP010961.1_3446415_3447294_+	PRK00030, minC, septum site-determining protein MinC
