The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	27282	70036	4105331	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	77634	136108	4105331	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	164892	225403	4105331	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	233335	286923	4105331	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278107_278254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	390856	448365	4105331	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	590431	651622	4105331	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590431_591382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591878_592748_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592744_593566_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593765_594257_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594275_595349_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595395_596499_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596574_597195_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597215_597725_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597779_598031_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598094_599228_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599235_599622_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599618_602138_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602566_602905_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602901_603408_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603469_604270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604380_605322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605415_606951_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608630_610481_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610484_611318_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611317_612259_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612510_613482_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613623_615912_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616218_617127_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617181_618147_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618221_619883_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619954_620665_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620631_620796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620813_621764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622462_622846_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622903_623506_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623523_623925_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624058_624952_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624948_625530_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626324_627059_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627099_628149_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628296_628875_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629261_630239_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630332_634727_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634927_635776_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635934_636747_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636802_637753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637851_638652_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638713_639097_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639108_640542_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640748_641078_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641080_641830_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642012_642933_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642979_643192_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643214_643637_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643653_644754_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644850_646368_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646443_647283_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647304_648186_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648267_649362_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649655_650606_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650680_651622_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	656946	703137	4105331	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656946_657972_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658012_658252_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658321_659911_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659910_660459_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660539_661112_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661130_662042_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662115_663084_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663206_664280_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664284_666105_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666181_667132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667220_667556_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667689_668340_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668361_669780_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669849_670605_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670573_671332_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671342_672224_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672240_672948_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672950_673709_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673918_675661_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675653_676178_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676217_677012_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677179_678253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678351_679302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679553_679760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679831_680443_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680997_681249_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681241_681931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681948_682170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682187_683138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683777_684263_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684249_685527_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685529_686948_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686976_688032_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688037_688280_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688402_689005_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689433_690384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691058_691310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691372_691855_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691856_692057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692056_692452_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692448_692847_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692843_693266_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693273_693774_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694028_694547_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694556_694886_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694903_695194_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695219_697832_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697841_698201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698268_698802_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698798_699188_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699180_703137_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	709303	763233	4105331	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709303_711034_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711086_711515_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711517_712198_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712197_712656_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712692_713667_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713683_715000_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715031_715529_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715615_716305_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716304_717354_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717350_718145_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718313_718664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718639_719197_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720326_721277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723414_724644_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724646_726089_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726193_727339_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727370_728168_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728192_729752_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729748_732121_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732230_733334_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733333_734026_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734169_734871_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734855_735233_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735964_736915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737074_737947_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738287_738506_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738545_739925_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739966_741364_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741403_743056_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743059_743944_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743943_744885_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744963_746583_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746749_747565_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747632_748202_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748202_749153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749807_750905_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750938_752204_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752361_753312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753555_754146_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754161_756606_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756725_757697_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757828_758353_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758312_759263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759484_761680_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761752_762181_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762282_763233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	854111	903375	4105331	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854111_855062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855079_855634_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855635_856070_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856066_856501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856484_857288_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857304_858120_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858116_858932_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859078_859780_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859807_861766_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861848_862799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863019_863688_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863811_864918_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864930_868044_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868040_869534_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869548_870220_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870263_870758_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870898_871546_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871649_873698_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873694_875707_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875732_877067_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877175_878168_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878234_880319_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880343_881315_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881443_882475_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882478_883630_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883800_884724_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884801_885626_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885822_886839_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887035_888019_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889617_891006_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891036_892026_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892136_893369_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893650_894451_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894473_896705_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897492_897939_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897960_898707_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898850_899828_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900461_901073_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901066_902284_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902424_903375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	912987	977927	4105331	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|912987_913938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913934_915767_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916165_916825_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916918_917065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917173_917341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917352_918033_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918314_919031_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919045_920347_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922491_925380_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925603_926956_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926984_927506_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927502_928957_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928991_929240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929345_930221_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930246_931302_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931314_932106_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932138_933509_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934685_935636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935688_935910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936069_936282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936401_937520_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938025_938277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938389_939340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939336_939720_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939774_941589_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941738_942566_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942611_943592_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943588_943801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943797_944979_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945142_945877_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945878_948491_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948626_950540_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951155_951566_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951663_952749_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952847_953798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953794_954769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954893_955805_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956081_956474_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956603_957554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957583_957766_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958538_959720_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959935_960613_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960609_961335_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961460_962042_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962412_965094_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965093_966227_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966219_967305_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967391_968291_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968287_969616_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969630_970302_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970489_972205_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972206_972566_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972757_973072_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973114_974335_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974331_975273_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975269_976259_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976293_976878_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976976_977927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	997327	1060463	4105331	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|997327_998278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998382_999432_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999569_1000586_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002094_1002667_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002726_1003458_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003509_1004427_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005234_1008414_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008410_1009793_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009862_1010114_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010259_1010874_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011060_1013175_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013250_1014102_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014098_1014725_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014721_1016476_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016768_1019474_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_014905654.1|1019486_1021133_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021145_1022936_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023157_1024333_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024375_1025326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025424_1026165_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026359_1028396_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028413_1029424_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029541_1030735_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030764_1031538_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031534_1032725_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032750_1033689_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033685_1036034_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036188_1036830_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036933_1038067_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038159_1038312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038343_1038892_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038910_1039396_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039573_1040512_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040514_1040832_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040877_1041822_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043502_1044153_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044206_1044542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044538_1045399_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045415_1045697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045770_1046034_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046277_1047228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047526_1048264_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048699_1049023_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049057_1049618_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049738_1050614_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050626_1051574_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051675_1051969_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051995_1054053_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054067_1054568_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054641_1056348_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057211_1058264_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058316_1058706_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058714_1059347_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059446_1060463_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	1066447	1126510	4105331	holin,protease,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1066447_1067875_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068812_1069829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070161_1071097_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071146_1073027_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073093_1073438_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073582_1074719_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074715_1075789_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075946_1077383_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077473_1078115_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078450_1079467_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081509_1082460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083662_1085084_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085347_1086064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086148_1086466_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086506_1086920_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086921_1087281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087323_1088868_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088951_1089782_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089816_1090971_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091013_1091886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092002_1094291_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095497_1095962_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095988_1096939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096956_1097094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097306_1098083_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098127_1098985_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099006_1100023_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100157_1101198_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101392_1103474_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103709_1105203_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105433_1106228_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106448_1107807_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107803_1108646_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108664_1110551_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110492_1110744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110788_1111421_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111439_1112042_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112193_1113144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113724_1114432_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114790_1115777_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115916_1116930_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116926_1117877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117894_1118035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117989_1118448_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118484_1119798_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119815_1120187_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120183_1121647_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121787_1122516_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122497_1125347_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125559_1126510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	1157576	1219747	4105331	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157576_1158527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158625_1159249_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159422_1161705_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161859_1164556_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164681_1165170_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167580_1170451_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170496_1171711_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171940_1173368_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173465_1174557_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174569_1175328_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175415_1176318_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176314_1177265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177394_1178378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178432_1179155_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180633_1181989_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182069_1184445_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184609_1186685_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186746_1187547_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187648_1188611_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188598_1189354_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189461_1191099_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191166_1191904_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192006_1192582_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192754_1193291_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193293_1193638_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193653_1194499_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194537_1195917_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195994_1196876_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196974_1197925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197921_1198332_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198439_1199294_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199286_1200249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200294_1201419_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201524_1202403_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202527_1203307_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203460_1204882_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205316_1207014_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207240_1208182_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208508_1209255_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209262_1210189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210310_1211228_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211267_1212221_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212245_1212824_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214497_1215106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215183_1215537_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215620_1216610_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216606_1216795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216812_1217763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217849_1218800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218796_1219747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	1270674	1327885	4105331	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270674_1271625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275371_1275983_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276205_1277666_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277762_1279355_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279708_1279966_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279967_1281308_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281403_1282093_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282105_1283536_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285260_1286082_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286092_1287664_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287692_1288670_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288696_1289500_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289496_1290291_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290298_1291534_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291526_1291961_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292710_1293661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294282_1296010_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296121_1297480_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297536_1297755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297772_1298723_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298763_1299834_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299856_1300735_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300906_1301878_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302040_1302883_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303044_1303725_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303718_1304888_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304884_1305916_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305959_1307201_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307235_1308768_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308848_1309472_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309502_1310114_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310149_1310620_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311051_1312056_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312092_1313607_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313610_1314570_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314598_1315402_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315403_1317038_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317121_1318183_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318381_1318651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318654_1319179_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319594_1320545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320541_1321576_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321684_1322323_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322617_1322845_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322967_1323681_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323925_1324876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1324979_1325261_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325375_1326824_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326934_1327885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	1712069	1760084	4105331	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1712069_1713020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1713118_1714069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1714167_1716768_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1716874_1717879_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1717987_1719328_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1719368_1720397_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1720592_1721138_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1721134_1721695_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1721793_1722744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1722781_1723369_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1723386_1723770_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1725129_1726422_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1726556_1727597_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1727694_1728711_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1728978_1729626_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1729751_1730510_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1730494_1731274_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1731291_1732176_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1732172_1732952_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1733056_1733656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1733944_1734697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1734815_1736216_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1736239_1736638_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1736813_1737014_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1737152_1737881_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1738014_1739430_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1739433_1740297_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1740309_1741059_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1741241_1743257_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1743238_1743907_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1744681_1745632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1745780_1746119_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1746176_1746338_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1746369_1746570_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1746835_1749409_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1749479_1752029_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1754579_1755068_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1755159_1756311_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1756364_1757186_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1757224_1758454_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1758582_1759023_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1759133_1760084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	1896643	1966295	4105331	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1896643_1899301_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1899378_1900581_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1900577_1901090_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1901212_1901650_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1901926_1902877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1902975_1903926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1904179_1905985_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1906098_1906266_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1906329_1906566_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1906934_1908134_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1909649_1910600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1911051_1912053_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1912225_1913083_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1913079_1914342_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1914442_1914817_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1914889_1916077_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1916161_1916932_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1917045_1917810_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1917760_1919062_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1919058_1919865_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1921609_1922581_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1922737_1923250_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1923408_1924383_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1925383_1926178_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1926203_1927010_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1927120_1927711_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1927721_1928900_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1929002_1929377_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1929629_1930961_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1931027_1934258_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1935748_1936495_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1936579_1937041_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1937078_1938137_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1938099_1939929_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1939968_1940541_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1941965_1942787_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1943105_1944428_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1944787_1945423_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1945382_1946333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1947203_1948076_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1948153_1949293_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1949651_1950908_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1950913_1951441_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1951445_1952264_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_062810228.1|1952263_1952986_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1953007_1953322_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1953339_1954488_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1954518_1955394_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1955390_1956710_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1956782_1957979_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1957989_1959477_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1962071_1962971_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1963108_1964074_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1964172_1965123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1965344_1966295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	1977791	2026138	4105331	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1977791_1978742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1979879_1980176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1980350_1981703_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1981845_1982862_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1984841_1985855_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|1985941_1986847_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1987003_1987348_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1987505_1987964_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1987977_1990194_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1990190_1991252_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1991280_1992255_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1992206_1993025_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1993037_1993646_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|1993820_1994216_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1994234_1995674_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1995702_1996050_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1996068_1997019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1997671_1998622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1998705_2000523_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2000596_2001244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2001256_2002186_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2002355_2002820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2003067_2003748_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2003796_2005488_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2005503_2006055_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2006051_2006423_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2006535_2007372_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2007382_2007907_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2008004_2008184_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2008313_2009288_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2009418_2009775_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2009764_2010640_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2010738_2011623_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2011644_2012940_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2013888_2014539_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2014626_2016147_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2016404_2018270_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2018266_2019217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2019234_2019375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2020189_2020549_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2020536_2021973_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2021969_2022623_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2022619_2023813_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2023916_2025191_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2025187_2026138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	2037342	2078033	4105331	protease,transposase,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2037342_2038293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2038391_2039342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2039301_2039715_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2039999_2040299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2040708_2042991_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2043676_2045707_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2045726_2045939_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2046216_2046756_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2046869_2048165_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2048241_2049399_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2049582_2050482_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2050500_2051805_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2051770_2052877_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2052964_2053201_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2053339_2054410_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2054413_2055769_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2055795_2056956_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2056958_2057597_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2057598_2058885_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2058943_2060239_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2060245_2060752_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2060748_2061897_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2061924_2062350_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2062672_2065555_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2065647_2066403_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2067168_2068518_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2068616_2069567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2069665_2070616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2070689_2071163_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2071188_2072397_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2072393_2073167_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2073166_2073790_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2073955_2074216_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2074519_2075101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2075167_2075422_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2075408_2078033_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	2215040	2276388	4105331	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2215040_2215991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2216107_2216827_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2216999_2217986_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2217986_2218469_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2218472_2219756_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2219752_2220691_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2220687_2222397_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2222406_2223654_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2225264_2226554_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2227691_2228450_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2229126_2229870_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2229944_2230685_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2230880_2231717_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2231767_2232538_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2232587_2233640_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2233636_2234263_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2234259_2235294_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2235472_2236489_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2236587_2237538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2240278_2241568_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2241686_2242124_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2242167_2243376_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2243522_2243987_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2244010_2244961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2245945_2246719_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2246715_2247714_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2247798_2248575_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2248730_2250335_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2250715_2251840_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2251966_2252590_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2252586_2254488_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2254536_2255331_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2255343_2256345_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2256341_2256848_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2256840_2257689_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2257786_2258329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2258372_2259323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2259478_2259805_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2259801_2260086_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2260082_2260562_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2260558_2262187_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2262183_2262528_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2262527_2265461_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2266619_2267570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2267668_2267965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2268071_2268989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2268993_2269707_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2269720_2270692_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2272411_2272792_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2272795_2273983_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2274406_2275144_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2275437_2276388_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	2297179	2368333	4105331	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2297179_2298130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2298682_2300308_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2300357_2301392_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2301394_2302741_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2302737_2304252_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2304242_2305253_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2305726_2306668_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2306676_2307645_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2309184_2310153_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2310330_2311320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2311366_2312125_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2312314_2313052_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2313150_2314101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2314285_2315068_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2315061_2315763_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2316002_2316605_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2317931_2318882_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2318878_2320435_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2320427_2321201_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2321259_2322210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2322291_2323467_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2323480_2325538_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2325534_2326560_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2326571_2327861_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2327883_2328981_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2328977_2329868_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2329864_2331949_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2331980_2333150_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2333191_2333932_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2333931_2334702_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2335026_2335194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2335557_2336343_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2336369_2338454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2338621_2340577_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2340900_2341401_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2341499_2343026_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2343163_2344051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2344065_2345019_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2345070_2347161_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2347176_2347563_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2350256_2351060_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2352353_2353256_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2353320_2354097_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2354418_2355468_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2355591_2357262_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2357266_2358061_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2358159_2359110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2359129_2360035_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2360112_2360811_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2360970_2361915_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2361924_2363412_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2363411_2364479_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2364542_2365955_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2366140_2367361_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2367382_2368333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	2465210	2523991	4105331	transposase,tRNA	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2465210_2467160_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2467547_2468324_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2468329_2468722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2469143_2470094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2470090_2471188_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2471219_2472170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2473951_2475193_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2475204_2475978_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2476004_2476955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477434_2478091_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478105_2479773_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479775_2480405_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480616_2481711_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481855_2482668_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2482671_2484375_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2484425_2485556_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485742_2486819_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486900_2487551_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487565_2488969_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489252_2490071_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2490067_2490772_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491671_2492787_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492820_2493195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493217_2494375_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494387_2494621_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495255_2498225_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498239_2498449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498600_2499230_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2499226_2501317_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501340_2502021_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502017_2502578_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502584_2503682_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503834_2504428_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504424_2505717_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505730_2506273_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506282_2507119_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507152_2508214_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508255_2509308_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509323_2509626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509767_2510718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510735_2510900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510896_2512591_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512587_2513673_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513720_2514620_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514630_2515275_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516296_2519539_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519549_2520704_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520930_2521893_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2521991_2522942_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523040_2523991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	2576526	2643026	4105331	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576526_2577477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577846_2578419_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578421_2579432_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579424_2579925_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579935_2580277_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2580288_2581080_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581096_2581366_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581388_2582177_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582223_2583240_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583456_2584899_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585077_2586697_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586817_2588638_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588716_2590249_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2590282_2591929_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2591998_2593021_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593038_2594172_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594174_2594864_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594863_2595649_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595692_2596457_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596495_2597917_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597982_2598687_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598734_2599154_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599166_2599574_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599757_2600468_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600594_2600885_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600902_2601385_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605890_2607045_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607350_2608367_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608613_2609402_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609468_2610149_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610145_2610916_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611014_2611965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612020_2612938_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612948_2614127_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614146_2615142_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616730_2617339_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617326_2618367_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618384_2619347_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619343_2620537_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620533_2621331_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621356_2622343_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622361_2624401_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2624602_2625283_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625296_2626208_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626204_2626783_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626921_2627827_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627834_2631254_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631241_2633842_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634797_2635430_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635823_2636582_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2636578_2637781_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637968_2638919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639826_2640972_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640958_2641714_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641830_2642010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642075_2643026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	2806631	2861148	4105331	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806631_2807582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807910_2808516_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808569_2809883_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809957_2810428_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810427_2811216_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811226_2812879_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812966_2813917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815078_2815585_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815581_2816346_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816361_2816646_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816710_2817700_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817871_2818801_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818772_2819459_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819492_2820038_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820082_2821348_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821344_2822247_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823428_2824373_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824467_2825985_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826026_2827655_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827762_2828644_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831756_2832131_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832155_2832494_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832537_2834172_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834210_2835557_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835664_2837086_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837155_2837740_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837842_2838793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838927_2840034_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840044_2841142_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841286_2842492_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842498_2843020_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843016_2843508_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843504_2843756_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843736_2844222_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844357_2847819_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847836_2848721_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848730_2849162_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849408_2849912_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849989_2851390_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851464_2852340_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852336_2853344_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853811_2854117_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854207_2854798_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854988_2856005_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856196_2858533_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858615_2859050_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859148_2860099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860197_2861148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	2869173	2925959	4105331	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2869173_2870124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871830_2872097_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872804_2873143_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877696_2878299_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878395_2879685_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879742_2880474_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880470_2881274_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881270_2882359_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882355_2883285_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883433_2884579_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884600_2885551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885568_2885727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885881_2889703_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889859_2890528_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890532_2892206_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892224_2893544_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893548_2895864_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895919_2898088_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898084_2903274_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903363_2903678_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_062810232.1|2903905_2904151_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	75.0	6.5e-20
WP_003820399.1|2904245_2904764_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904863_2906069_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906184_2907582_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907698_2908277_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908349_2909741_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909908_2910859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911139_2911760_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911756_2912170_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912166_2913210_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913265_2913454_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913463_2914228_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914318_2914975_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915066_2915825_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915850_2917452_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917652_2918657_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918757_2919021_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919138_2919915_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920505_2921456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923839_2924952_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925008_2925959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	2956345	3000036	4105331	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2956345_2957296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957313_2957463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957416_2958313_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960590_2962816_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962980_2964069_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964025_2964679_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964726_2965524_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966055_2967006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967080_2968235_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968291_2969242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969340_2969646_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969674_2970109_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970110_2971355_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971351_2972062_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972076_2972988_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973350_2973755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973751_2974210_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974216_2975125_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975121_2975988_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975974_2976802_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976812_2977940_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979017_2980256_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980297_2981560_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981566_2982319_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982370_2982556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982831_2983296_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983327_2983987_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984131_2986240_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986236_2987187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987290_2987911_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988002_2988755_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989889_2991014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991059_2991428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991669_2992620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993655_2994198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994395_2994566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994583_2995534_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995530_2996496_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996565_2997402_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997914_2999024_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999085_3000036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	3379982	3433723	4105331	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379982_3380933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381337_3381982_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382006_3382591_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382691_3383309_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383311_3385027_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385023_3385332_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385348_3385966_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386010_3386313_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386413_3387268_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387455_3387680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387849_3388122_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388539_3388947_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389316_3390111_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390211_3391447_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391515_3392532_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392543_3393920_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393916_3395113_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395109_3396648_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396644_3397904_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399844_3400795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401561_3402656_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402648_3403983_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403936_3404620_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3404645_3405809_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3405805_3406807_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406806_3407679_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407675_3408425_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408421_3409213_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409209_3410349_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410624_3411410_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411443_3412226_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412229_3412619_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3413758_3414622_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414657_3415746_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415742_3416693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417046_3420025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420951_3421830_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423778_3424729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424725_3425193_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425235_3426006_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426026_3426827_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426837_3428247_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428341_3429127_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429366_3430383_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430490_3430883_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431020_3431701_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431705_3432677_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432772_3433723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	3439878	3499176	4105331	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439878_3441642_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441753_3442632_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442744_3443560_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443563_3443815_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443899_3444916_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445246_3445468_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447828_3448746_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449243_3450452_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450531_3452103_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452220_3453156_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453344_3454289_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454856_3460574_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460579_3461707_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461762_3462389_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462660_3463677_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463772_3464483_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464479_3465469_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465564_3467196_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467198_3467936_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468091_3468964_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469232_3470453_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470449_3471109_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471180_3471813_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471842_3472361_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472371_3473481_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473527_3474382_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474383_3475286_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476508_3477459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479213_3480203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480199_3480358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480378_3481167_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481163_3482195_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482213_3482777_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482832_3484353_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484616_3485321_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485328_3486066_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486171_3486546_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486588_3487878_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487874_3489044_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489040_3489880_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489939_3490875_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490887_3491838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491936_3492899_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492930_3493290_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493414_3494317_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494318_3496091_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496125_3496902_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498225_3499176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	3514114	3572187	4105331	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514114_3515065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515193_3516327_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516370_3517276_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517278_3518979_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518975_3519896_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519903_3520881_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520939_3521974_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3523948_3524185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3524311_3525175_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525263_3526085_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526164_3526902_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3526898_3527891_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528004_3528667_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528711_3529860_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532183_3533134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533474_3534425_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534523_3535474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535770_3536268_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536310_3538086_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538093_3538960_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538966_3539701_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540870_3541665_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541954_3542545_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542578_3543907_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543981_3545127_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545238_3546237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546199_3546634_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548150_3549035_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549031_3550237_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550233_3551094_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3551206_3552997_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553037_3553703_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553703_3554012_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554177_3555464_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3556897_3557848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559799_3561014_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561119_3562109_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562105_3562714_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562726_3563356_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563352_3563973_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564004_3564796_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565647_3566103_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3566121_3567048_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567101_3568388_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569318_3570191_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570187_3571138_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571236_3572187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP010254	Bordetella pertussis strain I476 chromosome, complete genome	4105331	4027502	4080934	4105331	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4027502_4028453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028622_4029849_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030048_4030915_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030907_4031870_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031970_4032921_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033019_4033970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034068_4035019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035015_4036509_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036505_4039613_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039609_4042678_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042674_4043925_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044105_4044867_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044899_4045550_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045552_4046392_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046632_4047376_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4047458_4047806_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047903_4048746_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048790_4049678_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049704_4049893_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049990_4051448_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051434_4052961_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052979_4053447_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4053446_4054469_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4054589_4055309_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4055384_4056485_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056486_4057677_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057796_4058813_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059131_4059803_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059799_4060708_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060919_4061567_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065418_4066495_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066505_4067315_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4067404_4068178_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068178_4068343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068360_4069311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069199_4070222_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070211_4071366_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4071405_4072818_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072942_4073809_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073810_4074635_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4074631_4075393_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4075473_4076160_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076333_4077341_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077337_4078117_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078174_4079437_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4079983_4080934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
