The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	27282	70036	4107437	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	77634	136108	4107437	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	164892	225403	4107437	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	233335	286923	4107437	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278107_278254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	391905	449414	4107437	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391905_392856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392992_393910_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393906_394155_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394151_395357_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395429_396425_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396447_397668_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397664_398309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400039_400849_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401153_402107_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402205_403189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403115_403817_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403865_404636_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404632_405811_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405978_407685_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407681_408578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408618_410208_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410257_411250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411318_411918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412378_413359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413434_414385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414473_415388_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415384_416044_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416133_417057_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417062_417518_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417514_418618_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418576_418846_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418805_420425_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420421_421480_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421609_422104_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422196_423174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423369_424575_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424571_426083_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426098_427412_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427602_427782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428191_428926_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431370_432321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432452_432851_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433261_433732_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433820_434165_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434264_435665_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437453_437972_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438082_438838_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439033_440266_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440258_441044_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441110_442082_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442092_443070_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443195_444368_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444394_445423_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445488_446682_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448463_449414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	590419	651611	4107437	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591866_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593754_594246_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594264_595338_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595384_596488_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596563_597184_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597204_597714_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597768_598020_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598083_599217_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599224_599611_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599607_602127_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602555_602894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602890_603397_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603458_604259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604369_605311_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605404_606940_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608619_610470_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610473_611307_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611306_612248_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612499_613471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613612_615901_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616207_617116_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617170_618136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618210_619872_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619943_620654_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620620_620785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620802_621753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622451_622835_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622892_623495_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623512_623914_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624047_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626313_627048_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627088_628138_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628285_628864_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629250_630228_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635923_636736_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636791_637742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637840_638641_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638702_639086_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639097_640531_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640737_641067_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641069_641819_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642001_642922_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642968_643181_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643203_643626_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643642_644743_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644839_646357_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647293_648175_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648256_649351_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649644_650595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650669_651611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	656935	703126	4107437	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656935_657961_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658001_658241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658310_659900_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659899_660448_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660528_661101_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661119_662031_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662104_663073_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663195_664269_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664273_666094_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666170_667121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667209_667545_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667678_668329_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668350_669769_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669838_670594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672229_672937_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672939_673698_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673907_675650_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675642_676167_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676206_677001_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677168_678242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678340_679291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679542_679749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679820_680432_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680986_681238_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681230_681920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681937_682159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682176_683127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683766_684252_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684238_685516_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685518_686937_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686965_688021_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688026_688269_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688391_688994_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689422_690373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691047_691299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691361_691844_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691845_692046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692045_692441_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692437_692836_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692832_693255_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693262_693763_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694017_694536_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694545_694875_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694892_695183_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695208_697821_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697830_698190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698257_698791_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698787_699177_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699169_703126_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	709292	763222	4107437	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709292_711023_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711075_711504_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711506_712187_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712186_712645_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712681_713656_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713672_714989_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715020_715518_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715604_716294_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716293_717343_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717339_718134_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718302_718653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718628_719186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720315_721266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723403_724633_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724635_726078_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726182_727328_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727359_728157_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728181_729741_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729737_732110_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732219_733323_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733322_734015_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734158_734860_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734844_735222_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761741_762170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014905499.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	854100	903364	4107437	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854100_855051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855068_855623_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855624_856059_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856055_856490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856473_857277_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857293_858109_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858105_858921_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859067_859769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859796_861755_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861837_862788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863800_864907_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864919_868033_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868029_869523_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869537_870209_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870252_870747_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870887_871535_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871638_873687_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873683_875696_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875721_877056_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877164_878157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880332_881304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881432_882464_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882467_883619_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883789_884713_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884790_885615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	912976	977916	4107437	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916907_917054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917162_917330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957572_957755_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959924_960602_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960598_961324_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961449_962031_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962401_965083_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965082_966216_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966208_967294_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967380_968280_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968276_969605_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969619_970291_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970478_972194_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972195_972555_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972746_973061_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973103_974324_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974320_975262_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975258_976248_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976282_976867_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	997316	1060467	4107437	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003498_1004416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005223_1008403_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008399_1009782_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009851_1010103_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010248_1010863_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011049_1013164_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013239_1014091_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014087_1014714_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014710_1016465_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016757_1019463_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019475_1021137_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021149_1022940_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023161_1024337_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024379_1025330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025428_1026169_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026363_1028400_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028417_1029428_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029545_1030739_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030768_1031542_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031538_1032729_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032754_1033693_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033689_1036038_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036192_1036834_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036937_1038071_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038163_1038316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038347_1038896_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038914_1039400_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039577_1040516_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040518_1040836_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040881_1041826_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043506_1044157_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044210_1044546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044542_1045403_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045419_1045701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045774_1046038_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046281_1047232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047530_1048268_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048703_1049027_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049061_1049622_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049742_1050618_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050630_1051578_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051679_1051973_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051999_1054057_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054071_1054572_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054645_1056352_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057215_1058268_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058320_1058710_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058718_1059351_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059450_1060467_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1066451	1126514	4107437	holin,transposase,tRNA,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1066451_1067879_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068816_1069833_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070165_1071101_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071150_1073031_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073097_1073442_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073586_1074723_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074719_1075793_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075950_1077387_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077477_1078119_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078454_1079471_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081513_1082464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096960_1097098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117898_1118039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117993_1118452_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118488_1119802_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119819_1120191_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120187_1121651_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121791_1122520_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122501_1125351_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125563_1126514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1157580	1219753	4107437	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157580_1158531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158629_1159253_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159428_1161711_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161865_1164562_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164687_1165176_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167586_1170457_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170502_1171717_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171946_1173374_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173471_1174563_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174575_1175334_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175421_1176324_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176320_1177271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177400_1178384_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178438_1179161_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180639_1181995_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182075_1184451_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184615_1186691_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186752_1187553_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187654_1188617_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188604_1189360_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189467_1191105_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191172_1191910_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192012_1192588_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192760_1193297_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193299_1193644_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193659_1194505_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194543_1195923_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196000_1196882_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196980_1197931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197927_1198338_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198445_1199300_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199292_1200255_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200300_1201425_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201530_1202409_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202533_1203313_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203466_1204888_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205322_1207020_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207246_1208188_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208514_1209261_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209268_1210195_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210316_1211234_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211273_1212227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212251_1212830_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214503_1215112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215189_1215543_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215626_1216616_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216612_1216801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216818_1217769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217855_1218806_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218802_1219753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1270680	1327892	4107437	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270680_1271631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275377_1275989_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276211_1277672_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277768_1279361_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279714_1279972_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279973_1281314_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281409_1282099_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282111_1283542_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285266_1286088_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286098_1287670_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287698_1288676_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288702_1289506_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289502_1290297_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290304_1291540_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291532_1291967_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292716_1293667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294288_1296016_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296127_1297486_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297542_1297761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297778_1298729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298769_1299840_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299862_1300741_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300912_1301884_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302046_1302889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303050_1303731_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303724_1304894_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304890_1305922_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305965_1307207_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307241_1308774_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308854_1309478_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309508_1310120_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310155_1310626_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_050821245.1|1310800_1312063_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931017.1|1312099_1313614_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313617_1314577_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314605_1315409_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315410_1317045_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317128_1318190_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318388_1318658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318661_1319186_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319601_1320552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320548_1321583_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321691_1322330_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322624_1322852_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322974_1323688_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323932_1324883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1324986_1325268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325382_1326831_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326941_1327892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1418125	1470278	4107437	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418125_1419076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419093_1419246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419242_1419596_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419608_1419971_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420012_1420438_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420640_1421897_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422095_1423076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423225_1424467_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424565_1425516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425524_1426220_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429041_1429641_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429651_1431817_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431840_1433625_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433624_1433714_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434408_1434681_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434680_1436747_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436743_1437694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437792_1438743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438858_1439191_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439187_1439874_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439860_1440820_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440861_1443222_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443221_1443854_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443955_1445296_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445342_1446698_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446823_1447468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447412_1447730_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448002_1448518_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448611_1448773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448788_1449544_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449882_1450089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450096_1450756_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451050_1453255_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453365_1454589_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454711_1455686_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455753_1456947_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456961_1457762_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457758_1459615_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459611_1460217_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460235_1461621_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462346_1463573_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463661_1464444_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464542_1465493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465519_1466293_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466304_1467546_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469327_1470278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1574213	1645367	4107437	transposase	Ectocarpus_siliculosus_virus(10.0%)	55	NA	NA
WP_005012808.1|1574213_1575164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1575185_1576406_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1576591_1578004_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1578067_1579135_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1579134_1580622_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1580631_1581576_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1581735_1582434_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1582511_1583417_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1583436_1584387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248220.1|1584485_1585280_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_010930454.1|1585284_1586955_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_010930455.1|1587078_1588128_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811187.1|1588449_1589226_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930456.1|1589290_1590193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930457.1|1591486_1592290_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930458.1|1594983_1595370_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_033446218.1|1595385_1597476_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_003811203.1|1597527_1598481_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_010930460.1|1598495_1599383_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930461.1|1599520_1601047_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003811209.1|1601145_1601646_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_019247170.1|1601969_1603925_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930464.1|1604092_1606177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|1606203_1606989_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_019247171.1|1607352_1607520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930466.1|1607844_1608615_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486073.1|1608614_1609355_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930468.1|1609396_1610566_+	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_010930469.1|1610597_1612682_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003811224.1|1612678_1613569_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930470.1|1613565_1614663_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_010930471.1|1614685_1615975_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|1615986_1617012_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930473.1|1617008_1619066_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_023852812.1|1619079_1620255_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1620336_1621287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1621345_1622119_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1622111_1623668_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1623664_1624615_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1625941_1626544_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1626783_1627485_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1627478_1628261_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1628445_1629396_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1629494_1630232_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1630421_1631180_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1631226_1632216_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1632393_1633362_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1634901_1635870_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1635878_1636820_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1637293_1638304_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1638294_1639809_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1639805_1641152_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1641154_1642189_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1642238_1643864_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1644416_1645367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1666158	1727506	4107437	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
WP_005013747.1|1666158_1667109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1667402_1668140_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1668563_1669751_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1669754_1670135_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1671854_1672826_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1672839_1673553_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1673557_1674475_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1674581_1674878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1674976_1675927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930509.1|1677085_1680019_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1680018_1680363_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1680359_1681988_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1681984_1682464_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_003810975.1|1682460_1682745_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1682741_1683068_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1683223_1684174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1684217_1684760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1684857_1685706_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_004568494.1|1685698_1686205_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930515.1|1686201_1687203_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1687215_1688010_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1688058_1689960_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1689956_1690580_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1690706_1691831_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1692211_1693816_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1693971_1694748_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1694832_1695831_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1695827_1696601_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014905945.1|1697585_1698536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1698559_1699024_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1699170_1700379_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1700422_1700860_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1700978_1702268_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1705008_1705959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1706057_1707074_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1707252_1708287_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1708283_1708910_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1708906_1709959_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1710008_1710779_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1710829_1711666_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1711861_1712602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1712676_1713420_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1714096_1714855_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1715992_1717282_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1718892_1720140_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1720149_1721859_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1721855_1722794_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1722790_1724074_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1724077_1724560_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1724560_1725547_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1725719_1726439_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1726555_1727506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1833694	1892964	4107437	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1833694_1834645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1834769_1835579_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1835779_1836730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1838003_1839221_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1840277_1841180_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1841256_1842129_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1842259_1842628_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1842685_1843732_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1843927_1845184_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1845188_1846526_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1846675_1847632_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1847734_1848667_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1848782_1849103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1849095_1849455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1849502_1851077_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1851129_1852074_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1852091_1852922_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1852914_1854549_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1854545_1855901_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1856807_1858385_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1858388_1859663_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1859760_1860135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1861850_1862984_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1863021_1863627_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1863623_1864442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1864513_1867138_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1867124_1867379_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1867445_1868027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1868330_1868591_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1868756_1869380_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1869379_1870153_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1870149_1871358_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1871383_1871857_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1871930_1872881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1872979_1873930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1874028_1875378_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1876143_1876899_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1876991_1879874_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1880196_1880622_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1880649_1881798_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1881794_1882301_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1882307_1883603_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1883661_1884948_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1884949_1885588_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1885590_1886751_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1886777_1888133_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1888136_1889207_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1889345_1889582_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1889669_1890776_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1890741_1892046_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1892064_1892964_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 20
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1903204	1946478	4107437	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1903204_1904155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1904253_1905204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1905403_1906489_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1906504_1907266_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1907262_1908222_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1908284_1908785_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1908817_1909561_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1909656_1909896_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1909909_1910062_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1910147_1911638_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1911729_1912668_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1912664_1912841_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1912843_1913506_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1915127_1915271_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1915267_1916242_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1916136_1916391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1916408_1917359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1917355_1918630_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1918733_1919927_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1919923_1920577_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1920573_1922010_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1921997_1922357_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1923171_1923312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1923329_1924280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1924276_1926142_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1926399_1927920_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1928007_1928658_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1929606_1930902_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930923_1931808_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931906_1932782_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1932771_1933128_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1933258_1934233_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1934362_1934542_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1934639_1935164_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1935174_1936011_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1936123_1936495_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1936491_1937043_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1937058_1938750_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1938798_1939479_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1939726_1940191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1940360_1941290_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1941302_1941950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1942023_1943841_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943924_1944875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1945527_1946478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	1976251	2040620	4107437	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1976251_1977202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1977423_1978374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1978472_1979438_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1979575_1980475_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1983069_1984557_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1984567_1985764_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1985836_1987156_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1987152_1988028_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1988058_1989207_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1989224_1989539_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1989560_1990283_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1990282_1991101_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1991105_1991633_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1991638_1992895_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1993253_1994393_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1994470_1995343_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1996213_1997164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1997123_1997759_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1998118_1999441_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1999759_2000581_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2002005_2002578_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2002617_2004447_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2004409_2005468_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2005505_2005967_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2006051_2006798_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2008288_2011519_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2011585_2012917_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2013169_2013544_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2013646_2014825_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2014835_2015426_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2015536_2016343_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2016368_2017163_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2018163_2019138_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2019296_2019809_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2019965_2020937_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2022681_2023488_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2023484_2024786_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2024736_2025501_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2025614_2026385_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2026469_2027657_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2027729_2028104_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2028204_2029467_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2029463_2030321_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2030493_2031495_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2031946_2032897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2034412_2035612_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2035980_2036217_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2036280_2036448_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2036561_2038367_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2038620_2039571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2039669_2040620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	2172149	2221802	4107437	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2172149_2173100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173198_2175193_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175252_2176218_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176207_2179069_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179071_2179578_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179682_2180891_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180892_2181831_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181992_2182466_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182462_2183413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2183523_2183964_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2184092_2185322_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2185360_2186182_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2186235_2187387_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2187478_2187967_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2190517_2193067_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2193137_2195711_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195976_2196177_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2196208_2196370_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2196427_2196766_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196914_2197865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2198639_2199308_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2199289_2201305_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2201487_2202237_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2202249_2203113_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2203116_2204532_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2204665_2205394_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2205532_2205733_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205908_2206307_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2206330_2207731_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2207849_2208602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2208890_2209490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2209594_2210374_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2210370_2211255_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2211272_2212052_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2212036_2212795_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2212920_2213568_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2213835_2214852_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214949_2215990_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2216124_2217417_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2218776_2219160_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2219177_2219765_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2219802_2220753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2220851_2221802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	2478109	2536353	4107437	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2478109_2479060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2479539_2480196_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2480210_2481878_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2481880_2482510_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2482721_2483816_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2483960_2484773_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2484776_2486480_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2486530_2487661_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2487847_2488924_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2489005_2489656_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2489670_2491074_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2491357_2492176_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2492172_2492877_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2493776_2494892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2494925_2495300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2495322_2496480_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2496492_2496726_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2497360_2500330_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2500344_2500554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2500705_2501335_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2501331_2503422_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2503445_2504126_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2504122_2504683_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2504689_2505787_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2505939_2506533_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2506529_2507822_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2507835_2508378_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2508387_2509224_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2509257_2510319_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2510360_2511413_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2511428_2511731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2511872_2512823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2512840_2513005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2513001_2514696_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514692_2515778_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2515825_2516725_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516735_2517380_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518401_2521644_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521654_2522809_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523035_2523998_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524096_2525047_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525145_2526096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2526105_2526795_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2526854_2527292_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2527337_2528231_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2528278_2529451_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2529447_2530602_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2530798_2531149_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2531138_2531573_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2531589_2532540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2532687_2533155_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2533135_2534293_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2534358_2535285_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2535402_2536353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	2578631	2645131	4107437	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578631_2579582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579951_2580524_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580526_2581537_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581529_2582030_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582040_2582382_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2582393_2583185_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583201_2583471_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583493_2584282_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584328_2585345_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585561_2587004_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587182_2588802_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2588922_2590743_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2590821_2592354_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2592387_2594034_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594103_2595126_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595143_2596277_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596279_2596969_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596968_2597754_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597797_2598562_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598600_2600022_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600087_2600792_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2600839_2601259_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601271_2601679_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2601862_2602573_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602699_2602990_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603007_2603490_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2607995_2609150_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609455_2610472_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610718_2611507_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611573_2612254_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612250_2613021_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2613119_2614070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614125_2615043_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615053_2616232_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616251_2617247_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2618835_2619444_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619431_2620472_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620489_2621452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621448_2622642_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622638_2623436_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623461_2624448_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624466_2626506_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2626707_2627388_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627401_2628313_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628309_2628888_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629026_2629932_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629939_2633359_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633346_2635947_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636902_2637535_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637928_2638687_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2638683_2639886_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640073_2641024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641931_2643077_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643063_2643819_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643935_2644115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644180_2645131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	2808736	2863253	4107437	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808736_2809687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810015_2810621_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810674_2811988_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812062_2812533_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812532_2813321_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813331_2814984_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815071_2816022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817183_2817690_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817686_2818451_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818466_2818751_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818815_2819805_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819976_2820906_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820877_2821564_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821597_2822143_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822187_2823453_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823449_2824352_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825533_2826478_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826572_2828090_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828131_2829760_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829867_2830749_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833861_2834236_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834260_2834599_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834642_2836277_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836315_2837662_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837769_2839191_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839260_2839845_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839947_2840898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841032_2842139_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842149_2843247_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843391_2844597_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844603_2845125_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845121_2845613_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845609_2845861_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845841_2846327_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846462_2849924_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849941_2850826_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850835_2851267_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851513_2852017_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852094_2853495_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853569_2854445_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854441_2855449_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855916_2856222_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856312_2856903_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857093_2858110_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858301_2860638_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860720_2861155_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861253_2862204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862302_2863253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	2871278	2928065	4107437	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871278_2872229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873935_2874202_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874909_2875248_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879802_2880405_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880501_2881791_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881848_2882580_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882576_2883380_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883376_2884465_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884461_2885391_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885539_2886685_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886706_2887657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887674_2887833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887987_2891809_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891965_2892634_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892638_2894312_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894330_2895650_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895654_2897970_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898025_2900194_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900190_2905380_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905469_2905784_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906011_2906257_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906351_2906870_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906969_2908175_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908290_2909688_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909804_2910383_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910455_2911847_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912014_2912965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913245_2913866_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913862_2914276_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914272_2915316_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915371_2915560_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915569_2916334_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916424_2917081_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917172_2917931_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917956_2919558_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919758_2920763_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920863_2921127_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921244_2922021_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922611_2923562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925945_2927058_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927114_2928065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	2958451	3002142	4107437	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958451_2959402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959419_2959569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959522_2960419_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962696_2964922_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965086_2966175_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966131_2966785_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966832_2967630_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968161_2969112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969186_2970341_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970397_2971348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971446_2971752_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971780_2972215_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972216_2973461_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973457_2974168_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974182_2975094_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975456_2975861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975857_2976316_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976322_2977231_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977227_2978094_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978080_2978908_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978918_2980046_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981123_2982362_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982403_2983666_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983672_2984425_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984476_2984662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984937_2985402_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985433_2986093_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986237_2988346_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988342_2989293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989396_2990017_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990108_2990861_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991995_2993120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993165_2993534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993775_2994726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995761_2996304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996501_2996672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996689_2997640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997636_2998602_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998671_2999508_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000020_3001130_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3001191_3002142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	3382088	3435829	4107437	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382088_3383039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383443_3384088_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384112_3384697_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384797_3385415_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385417_3387133_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387129_3387438_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387454_3388072_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388116_3388419_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388519_3389374_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389561_3389786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389955_3390228_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390645_3391053_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391422_3392217_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392317_3393553_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393621_3394638_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394649_3396026_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396022_3397219_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397215_3398754_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398750_3400010_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401950_3402901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403667_3404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404754_3406089_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406042_3406726_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406751_3407915_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407911_3408913_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408912_3409785_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409781_3410531_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410527_3411319_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411315_3412455_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412730_3413516_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413549_3414332_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414335_3414725_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415864_3416728_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416763_3417852_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417848_3418799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419152_3422131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423057_3423936_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425884_3426835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426831_3427299_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427341_3428112_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428132_3428933_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428943_3430353_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430447_3431233_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431472_3432489_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432596_3432989_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433126_3433807_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433811_3434783_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434878_3435829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	3441984	3501282	4107437	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3441984_3443748_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443859_3444738_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444850_3445666_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445669_3445921_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446005_3447022_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447352_3447574_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449934_3450852_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451349_3452558_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452637_3454209_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454326_3455262_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455450_3456395_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456962_3462680_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462685_3463813_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463868_3464495_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3464766_3465783_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465878_3466589_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466585_3467575_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467670_3469302_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469304_3470042_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470197_3471070_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471338_3472559_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472555_3473215_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473286_3473919_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473948_3474467_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474477_3475587_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475633_3476488_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476489_3477392_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478614_3479565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481319_3482309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482305_3482464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482484_3483273_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483269_3484301_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484319_3484883_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484938_3486459_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486722_3487427_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487434_3488172_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488277_3488652_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488694_3489984_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489980_3491150_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491146_3491986_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492045_3492981_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492993_3493944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494042_3495005_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495036_3495396_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495520_3496423_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496424_3498197_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498231_3499008_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500331_3501282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	3516220	3574293	4107437	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516220_3517171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517299_3518433_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518476_3519382_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519384_3521085_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521081_3522002_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522009_3522987_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523045_3524080_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526054_3526291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526417_3527281_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527369_3528191_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528270_3529008_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3529004_3529997_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530110_3530773_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530817_3531966_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534289_3535240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535580_3536531_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536629_3537580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537876_3538374_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538416_3540192_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540199_3541066_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541072_3541807_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542976_3543771_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544060_3544651_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544684_3546013_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546087_3547233_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547344_3548343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548305_3548740_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550256_3551141_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551137_3552343_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552339_3553200_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553312_3555103_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555143_3555809_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555809_3556118_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556283_3557570_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3559003_3559954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561905_3563120_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563225_3564215_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564211_3564820_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564832_3565462_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565458_3566079_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566110_3566902_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567753_3568209_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568227_3569154_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569207_3570494_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571424_3572297_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572293_3573244_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573342_3574293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP010256	Bordetella pertussis strain I483 chromosome, complete genome	4107437	4029608	4083040	4107437	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4029608_4030559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030728_4031955_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032154_4033021_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033013_4033976_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034076_4035027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035125_4036076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036174_4037125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037121_4038615_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038611_4041719_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041715_4044784_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044780_4046031_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046211_4046973_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4047005_4047656_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047658_4048498_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048738_4049482_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049564_4049912_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050009_4050852_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050896_4051784_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051810_4051999_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052096_4053554_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053540_4055067_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055085_4055553_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055552_4056575_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056695_4057415_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057490_4058591_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058592_4059783_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059902_4060919_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061237_4061909_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061905_4062814_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063025_4063673_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067524_4068601_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068611_4069421_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069510_4070284_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070284_4070449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070466_4071417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071305_4072328_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072317_4073472_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073511_4074924_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075048_4075915_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075916_4076741_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076737_4077499_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077579_4078266_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078439_4079447_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079443_4080223_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080280_4081543_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082089_4083040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
