The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	27282	70036	4103417	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	77634	136108	4103417	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	164893	225404	4103417	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	233336	286924	4103417	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	556358	615658	4103417	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|556358_557309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558632_559409_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559443_561216_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561217_562120_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562244_562604_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562635_563598_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563696_564647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564659_565595_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565654_566494_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566490_567660_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567656_568946_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568988_569363_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|569468_570206_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570213_570918_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571181_572702_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572757_573321_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573339_574371_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574367_575156_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|575176_575335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|575331_576321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578077_579028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580250_581153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581154_582009_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582055_583165_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583175_583694_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583723_584356_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584427_585087_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|585083_586304_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586572_587445_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587600_588338_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588340_589972_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590067_591057_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591053_591764_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591859_592876_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593147_593774_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|593829_594957_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594962_600680_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601247_602192_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602380_603316_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603433_605005_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605084_606293_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606790_607708_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610068_610290_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610620_611637_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611721_611973_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611976_612792_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612904_613783_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613894_615658_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	621813	674672	4103417	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621813_622764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622859_623831_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623835_624516_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624653_625046_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625153_626170_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626409_627195_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627289_628699_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628709_629510_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629530_630301_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|630343_630811_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630807_631758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632824_633703_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634629_637608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637961_638912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638908_639997_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640032_640896_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|642035_642425_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642428_643211_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643244_644030_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644305_645445_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645441_646233_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646229_646979_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646975_647848_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647847_648849_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648845_650009_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|650034_650718_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650671_652006_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651998_653093_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653859_654810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656750_658010_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658006_659545_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659541_660738_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660734_662111_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|662122_663139_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663207_664443_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664543_665338_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665707_666115_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666532_666805_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666974_667199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667386_668241_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668341_668644_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668688_669306_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669322_669631_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669627_671343_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671345_671963_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672063_672648_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672672_673317_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_010929956.1|673721_674672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	723610	763560	4103417	tRNA,integrase,protease,transposase	Pseudomonas_phage(33.33%)	30	720858:720876	740746:740764
720858:720876	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723610_724207_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724203_724986_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725058_726150_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726429_727557_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727898_728945_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|729092_732212_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732213_735165_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735180_736392_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736575_737526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737542_738037_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738040_738298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738841_739753_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739834_740119_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740902_741853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740746:740764	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742271_744836_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744880_746734_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|747066_748638_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749906_750062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|750079_751030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751115_751856_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752082_753030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|754417_755368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|755385_755598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|755561_756377_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756509_757949_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757962_758304_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758358_760014_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|760165_761176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761308_762082_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762609_763560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	773487	821105	4103417	tRNA,holin,protease,transposase	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|773487_774438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774576_775329_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775567_777292_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777311_778571_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778585_779680_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779676_781803_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781815_782496_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782773_784147_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|784148_785168_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785231_786203_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786267_787218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787316_788159_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|788158_788494_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788564_789983_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790262_791303_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791382_791634_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791744_792908_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793191_794046_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794042_794933_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794975_795887_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795913_796606_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796620_797601_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797613_799755_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799803_800772_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800762_801431_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801391_802327_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802323_803220_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803216_803939_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803929_804094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804267_804771_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805047_806163_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806305_806770_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806917_807457_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807478_808813_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808826_809132_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809556_810138_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810219_811170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811268_812219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812659_813565_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813620_815225_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815481_816987_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817001_817466_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817755_818706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|818723_818912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|818868_819399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819398_819710_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|820154_821105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	1005321	1099357	4103417	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1005321_1006272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006374_1007037_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1007131_1007302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007654_1008656_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008658_1009855_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009875_1010679_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010759_1011056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011086_1011650_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011690_1012548_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012555_1013305_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013326_1014199_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014227_1015007_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015040_1015838_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018492_1018885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018878_1019739_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019742_1020705_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021481_1022171_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023031_1023982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826534.1|1024331_1025201_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025271_1025967_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025956_1026466_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026462_1027683_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027630_1028533_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029419_1030706_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030744_1032118_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1032156_1032858_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1033156_1034146_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034246_1034708_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034723_1035272_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035413_1036889_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036994_1038086_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038089_1038872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038881_1039670_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040795_1041230_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041226_1042237_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042280_1043207_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043492_1043861_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1043913_1044060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1044077_1045028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045072_1047499_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047547_1048240_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048312_1049512_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049529_1050435_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050550_1051480_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051505_1052852_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052879_1053629_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053642_1054425_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054617_1055568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055629_1056739_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057251_1058088_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1058157_1059123_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1059119_1060070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1060087_1060258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060455_1060998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062033_1062984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063225_1063594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063639_1064764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065898_1066651_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066742_1067363_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067466_1068417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068413_1070522_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070666_1071326_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071357_1071822_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072097_1072283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072334_1073087_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073093_1074356_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_077598843.1|1074397_1075636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076713_1077841_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077851_1078679_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078665_1079532_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080898_1081303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081394_1082345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1082362_1082527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1082714_1083626_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083640_1084351_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084347_1085592_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085593_1086028_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086056_1086362_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086460_1087411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087467_1088622_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088696_1089647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090178_1090976_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091023_1091677_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091633_1092722_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092886_1095112_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097389_1098286_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1098239_1098389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1098406_1099357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	1129743	1201764	4103417	protease,transposase	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
WP_005012808.1|1129743_1130694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130750_1131863_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134246_1135197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1135295_1136246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136836_1137613_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137730_1137994_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1138094_1139099_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139299_1140901_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140926_1141685_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141776_1142433_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142523_1143288_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143297_1143486_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143541_1144585_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144581_1144995_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144991_1145612_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145892_1146843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1147010_1148402_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148474_1149053_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149169_1150567_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150682_1151888_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151987_1152506_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152600_1152846_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1153073_1153388_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1153477_1158667_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158663_1160832_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160887_1163203_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163207_1164527_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164545_1166219_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166223_1166892_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1167048_1170870_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1171024_1171183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1171200_1172151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172172_1173318_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173466_1174396_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174392_1175481_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175477_1176281_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176277_1177009_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1177066_1178356_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178452_1179055_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183609_1183948_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184655_1184922_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186628_1187579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187575_1188907_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190167_1192168_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1192160_1192802_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192798_1193206_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193202_1194003_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1194077_1194782_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194813_1195608_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195604_1196555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196653_1197604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197702_1198137_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198219_1200556_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010931363.1|1200747_1201764_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	1249158	1330033	4103417	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1249158_1250109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1250105_1251056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251316_1252345_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252424_1253723_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253719_1254301_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254613_1258660_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258900_1266562_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266558_1267509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268648_1269122_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269261_1269882_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1270017_1270818_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270872_1271964_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1271985_1272429_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272457_1273090_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273200_1273617_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273609_1274302_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274408_1274783_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1274859_1275669_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275764_1276709_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276747_1277719_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277809_1278247_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278305_1279187_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280190_1281051_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1281083_1282466_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282462_1283482_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283854_1284349_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284356_1285097_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285177_1286782_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286821_1287610_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1288812_1289901_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1290781_1291594_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291606_1291915_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1292032_1293763_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1293764_1294910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1295039_1295708_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295829_1296297_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296432_1297815_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297811_1298936_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298932_1301569_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301984_1302935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306681_1307293_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307515_1308976_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1309072_1310665_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1311018_1311276_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311277_1312618_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312713_1313403_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313415_1314846_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316570_1317392_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317402_1318974_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1319002_1319980_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1320006_1320810_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320806_1321601_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321608_1322844_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1322836_1323271_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1324020_1324971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325592_1327320_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327431_1328790_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1328846_1329065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1329082_1330033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	1449428	1501581	4103417	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1449428_1450379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1450396_1450549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1450545_1450899_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450911_1451274_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451315_1451741_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451943_1453200_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453398_1454379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454528_1455770_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455868_1456819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456827_1457523_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460344_1460944_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460954_1463120_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1463143_1464928_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464927_1465017_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465711_1465984_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465983_1468050_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1468046_1468997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1469095_1470046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1470161_1470494_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470490_1471177_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1471163_1472123_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1472164_1474525_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474524_1475157_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475258_1476599_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476645_1478001_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1478126_1478771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478715_1479033_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479305_1479821_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1479914_1480076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1480091_1480847_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481185_1481392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481399_1482059_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482353_1484558_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484668_1485892_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1486014_1486989_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1487056_1488250_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488264_1489065_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1489061_1490918_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490914_1491520_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491538_1492924_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493649_1494876_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1494964_1495747_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495845_1496796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496822_1497596_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497607_1498849_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500630_1501581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	1545506	1613592	4103417	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1545506_1545995_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1546112_1546691_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546796_1547165_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1547263_1548214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548220_1549333_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1550019_1551222_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1551257_1551404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1551425_1554086_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1554098_1557503_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558170_1560396_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560442_1560769_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560819_1561428_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561526_1562477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562546_1563311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1563307_1563907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1564010_1564862_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564921_1565548_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565544_1566495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566593_1567706_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567695_1568697_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568802_1570314_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570310_1571615_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571726_1572287_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572554_1573109_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573564_1573780_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1574034_1576632_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576628_1577816_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1578474_1579089_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1579177_1580305_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580316_1581222_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1582114_1583065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583246_1583999_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1584067_1584727_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584723_1585452_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585464_1587744_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587768_1587972_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1588013_1588646_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588781_1589699_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589695_1590409_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590646_1591417_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591421_1592021_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592265_1593756_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593814_1594099_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1594236_1594392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594664_1595591_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595727_1596468_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596634_1598011_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598192_1599098_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600749_1602552_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1602678_1603320_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603418_1604369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604390_1605611_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605796_1607209_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607272_1608340_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1608339_1609827_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609836_1610781_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610940_1611639_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611716_1612622_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612641_1613592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	1649541	1705132	4103417	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649541_1650492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650550_1651324_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651316_1652873_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652869_1653820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1655146_1655749_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655988_1656690_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656683_1657466_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657650_1658601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658699_1659437_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659626_1660385_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660431_1661421_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661598_1662567_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664106_1665075_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665083_1666025_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666498_1667509_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667499_1669014_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1669010_1670357_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1670359_1671394_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671443_1673069_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010929591.1|1673621_1674572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674676_1675624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675677_1677492_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677484_1678159_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678288_1681363_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681376_1681676_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681990_1682614_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1682857_1683727_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683704_1684649_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684734_1685661_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685773_1686553_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686543_1687740_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687770_1688721_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688942_1689632_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689696_1690452_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690503_1691496_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691505_1692459_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692574_1693537_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694938_1695367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695363_1696314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1696607_1697345_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697768_1698956_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698959_1699340_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1701059_1702031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1702044_1702758_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702762_1703680_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703786_1704083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704181_1705132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	1937896	2007548	4103417	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937896_1940554_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940631_1941834_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941830_1942343_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942465_1942903_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943179_1944130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944228_1945179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1945432_1947238_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1947351_1947519_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947582_1947819_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1948187_1949387_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950902_1951853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952304_1953306_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953478_1954336_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954332_1955595_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955695_1956070_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1956142_1957330_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957414_1958185_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958298_1959063_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1959013_1960315_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1960311_1961118_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1962862_1963834_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963990_1964503_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964661_1965636_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966636_1967431_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967456_1968263_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968373_1968964_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968974_1970153_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970255_1970630_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970882_1972214_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972280_1975511_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1977001_1977748_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977832_1978294_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978331_1979390_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979352_1981182_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981221_1981794_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983218_1984040_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984358_1985681_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1986040_1986676_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986635_1987586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988456_1989329_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989406_1990546_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990904_1992161_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1992166_1992694_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992698_1993517_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993516_1994239_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994260_1994575_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994592_1995741_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995771_1996647_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996643_1997963_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1998035_1999232_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999242_2000730_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003324_2004224_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004361_2005327_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005425_2006376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006597_2007548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	2019044	2068440	4103417	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2019044_2019995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2021132_2021429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021603_2022956_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2023098_2024115_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2026094_2027108_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2027194_2028100_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028256_2028601_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028758_2029217_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029230_2031447_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031443_2032505_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032533_2033508_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033459_2034278_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034290_2034899_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2035073_2035469_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035487_2036927_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036955_2037303_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037321_2038272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038924_2039875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039958_2041776_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041849_2042497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042509_2043439_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043608_2044073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044320_2045001_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2045049_2046741_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046756_2047308_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047304_2047676_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047788_2048625_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048635_2049160_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049257_2049437_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049566_2050541_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050671_2051028_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2051017_2051893_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051991_2052876_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052897_2054193_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2055141_2055792_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2055879_2057400_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057657_2059523_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060568_2061519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2061536_2061677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2062491_2062851_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062838_2064275_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064271_2064925_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2064921_2066115_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066218_2067493_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067489_2068440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	2079644	2148020	4103417	tRNA,protease,transposase	Klosneuvirus(22.22%)	58	NA	NA
WP_005013747.1|2079644_2080595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2080693_2081644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081603_2082017_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082301_2082601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2083010_2085293_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2085978_2088009_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2088028_2088241_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088518_2089058_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2089171_2090467_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090543_2091701_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091884_2092784_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092802_2094107_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2094072_2095179_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095266_2095503_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095641_2096712_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096715_2098071_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2098097_2099258_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099260_2099899_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2099900_2101187_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2101245_2102541_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102547_2103054_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2103050_2104199_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104226_2104652_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104974_2107857_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107949_2108705_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109470_2110820_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930048.1|2110918_2111869_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2111942_2112416_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2112441_2113650_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2113646_2114420_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2114419_2115043_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2115208_2115469_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2115772_2116354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2116420_2116675_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2116661_2119286_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2119357_2120176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2120172_2120778_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2120815_2121949_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2123664_2124039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2124136_2125411_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2125414_2126992_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2127898_2129254_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2129250_2130885_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2130877_2131708_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2131725_2132670_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2132722_2134297_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2134344_2134704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2134696_2135017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2135132_2136065_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2136167_2137124_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2137273_2138611_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2138615_2139872_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2140067_2141114_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2141171_2141540_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2141670_2142543_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2142619_2143522_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2144578_2145796_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2147069_2148020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	2163298	2228119	4103417	tRNA,protease,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2163298_2164249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2164819_2165032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165049_2165781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2165815_2166457_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2166449_2167118_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2169330_2170107_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2170128_2171286_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2171282_2171714_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2171710_2172514_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2172527_2172929_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2172995_2173967_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174032_2175256_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2175483_2176434_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2176557_2179011_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2179199_2180504_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2180608_2181262_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2181264_2182575_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2182771_2183332_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2183443_2183644_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2183989_2184556_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2184639_2184843_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2185149_2185470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2185511_2185793_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2185867_2187124_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2187506_2187836_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2189406_2190228_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2190227_2191367_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2191373_2192270_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2192266_2194192_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2194551_2197164_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2197216_2199517_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2199513_2200722_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2200983_2201358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2201354_2202305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2202403_2204398_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2204457_2205423_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2205412_2208274_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2208276_2208783_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2208887_2210096_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210097_2211036_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2211197_2211671_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2211667_2212618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2212728_2213169_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2213297_2214527_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2214565_2215387_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2215440_2216592_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2216683_2217172_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2219722_2222272_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2222342_2224916_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2225181_2225382_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2225413_2225575_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2225632_2225971_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2226119_2227070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2227168_2228119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	2506265	2564509	4103417	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2506265_2507216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507695_2508352_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508366_2510034_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2510036_2510666_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510877_2511972_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2512116_2512929_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_145916319.1|2512932_2514636_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
WP_010930382.1|2514686_2515817_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2516003_2517080_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2517161_2517812_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517826_2519230_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519513_2520332_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2520328_2521033_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521932_2523048_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2523081_2523456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523478_2524636_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524648_2524882_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525516_2528486_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528500_2528710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528861_2529491_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2529487_2531578_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531601_2532282_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532278_2532839_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532845_2533943_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2534095_2534689_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534685_2535978_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535991_2536534_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536543_2537380_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537413_2538475_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538516_2539569_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539584_2539887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2540028_2540979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2540996_2541161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2541157_2542852_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542848_2543934_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543981_2544881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544891_2545536_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546557_2549800_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549810_2550965_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551191_2552154_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552252_2553203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553301_2554252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554261_2554951_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2555010_2555448_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555493_2556387_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556434_2557607_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557603_2558758_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2558954_2559305_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559294_2559729_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559745_2560696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560843_2561311_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561291_2562449_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562514_2563441_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563558_2564509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	2607837	2674337	4103417	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607837_2608788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2609157_2609730_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609732_2610743_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610735_2611236_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611246_2611588_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2611599_2612391_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612407_2612677_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612699_2613488_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613534_2614551_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614767_2616210_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616388_2618008_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2618128_2619949_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620027_2621560_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2621593_2623240_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623309_2624332_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624349_2625483_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625485_2626175_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2626174_2626960_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627003_2627768_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627806_2629228_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629293_2629998_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630045_2630465_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630477_2630885_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631068_2631779_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631905_2632196_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632213_2632696_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637201_2638356_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638661_2639678_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639924_2640713_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640779_2641460_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641456_2642227_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642325_2643276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643331_2644249_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644259_2645438_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645457_2646453_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648041_2648650_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648637_2649678_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649695_2650658_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650654_2651848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651844_2652642_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652667_2653654_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653672_2655712_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2655913_2656594_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656607_2657519_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657515_2658094_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658232_2659138_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2659145_2662565_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662552_2665153_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666108_2666741_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2667134_2667893_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2667889_2669092_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669279_2670230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2671137_2672283_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672269_2673025_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2673141_2673321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673386_2674337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	2872676	2946002	4103417	tRNA,protease,transposase	Catovirus(22.22%)	53	NA	NA
WP_062826539.1|2872676_2874032_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875510_2876233_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876287_2877271_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877400_2878351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878347_2879250_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879337_2880096_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2880108_2881200_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881297_2882725_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882954_2884169_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884214_2887085_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889495_2889984_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2890109_2892806_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892960_2895243_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2895417_2896041_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2896139_2897090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2897136_2897691_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897758_2898604_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898673_2899642_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2899641_2900505_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2903337_2907264_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907999_2911230_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911511_2912339_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912372_2913068_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2913060_2914341_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914350_2915328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915309_2917010_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2917112_2918216_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918246_2919002_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2919008_2920529_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920571_2920874_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920870_2921503_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921581_2923447_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923443_2924238_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924266_2925382_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926286_2927165_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927164_2927989_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2928156_2929107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929319_2932169_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2932150_2932879_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933019_2934483_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934479_2934851_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934868_2936182_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936218_2936677_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2936631_2936772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2936789_2937740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937736_2938750_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938889_2939876_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940234_2940942_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941522_2942473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942624_2943227_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943245_2943878_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943922_2944174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2944115_2946002_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	2957727	3007340	4103417	tRNA,holin,transposase	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2957727_2958678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958704_2959169_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960375_2962664_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962780_2963653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963695_2964850_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964884_2965715_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965798_2967343_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967385_2967745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967746_2968160_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968200_2968518_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968602_2969319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969582_2971004_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971070_2973818_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930320.1|2974150_2975167_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975502_2976144_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976234_2977671_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977828_2978902_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978898_2980035_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2980179_2980524_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2980590_2982471_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2982520_2983456_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983788_2984805_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985742_2987170_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987166_2988189_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988178_2988652_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988792_2989680_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989676_2991320_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2991316_2992366_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2993154_2994171_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994270_2994903_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994911_2995301_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995353_2996406_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997269_2998976_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999049_2999550_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999564_3001622_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001648_3001942_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002043_3002991_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003003_3003879_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003999_3004560_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004594_3004918_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005353_3006091_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006389_3007340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	3028291	3100785	4103417	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3028291_3029242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029284_3030460_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030681_3032472_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032484_3034146_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3034158_3036864_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3037156_3038911_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038907_3039534_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039530_3040382_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3040457_3042572_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042758_3043373_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043518_3043770_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043839_3045222_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045218_3048398_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049205_3050123_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050174_3050906_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050965_3051538_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053046_3054063_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054200_3055250_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055354_3056305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056400_3057126_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057336_3057717_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058022_3058895_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058902_3059283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059436_3060711_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062198_3063107_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063904_3064969_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3066805_3067807_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068029_3068671_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068753_3070580_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070823_3071753_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071752_3072502_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072573_3073488_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073507_3074653_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074713_3075625_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075705_3076656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076754_3077339_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077373_3078363_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078359_3079301_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079297_3080518_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080560_3080875_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3081066_3081426_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081427_3083143_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083330_3084002_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3084016_3085345_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085341_3086241_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086327_3087413_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3087405_3088539_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3088538_3091220_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091590_3092172_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092297_3093023_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3093019_3093697_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093912_3095094_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095866_3096049_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3096078_3097029_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3097158_3097551_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097827_3098739_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098863_3099838_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099834_3100785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	3114292	3168859	4103417	holin,transposase	Bacillus_phage(33.33%)	45	NA	NA
WP_010929969.1|3114292_3115243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930066.1|3115341_3116292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3116404_3116656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3117161_3118280_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3118399_3118612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3118771_3118993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119045_3119996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3121172_3122543_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3122575_3123367_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3123379_3124435_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3124460_3125336_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3125441_3125690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3125724_3127179_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3127175_3127697_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3127725_3129078_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3129301_3132190_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3134334_3135636_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3135650_3136367_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3136648_3137329_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3137340_3137508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3137616_3137763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3137856_3138516_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3138914_3140747_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3140743_3141694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3142857_3144573_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3144583_3145075_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3145147_3146164_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3146331_3147111_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147129_3147657_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3147950_3148220_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3148310_3150470_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3150590_3151310_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3151306_3152257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3152397_3153615_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3153608_3154220_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3154853_3155831_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3155974_3156721_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3156742_3157189_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3157976_3160208_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3160230_3161031_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3161312_3162545_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3162655_3163645_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3163675_3165064_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3166662_3167646_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3167842_3168859_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	3233317	3306479	4103417	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3233317_3234268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234264_3235284_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235293_3238002_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3238149_3238806_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238904_3239855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240002_3240896_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241095_3242790_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242824_3243751_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243819_3244917_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244935_3245799_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245810_3246593_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246589_3247708_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247704_3249237_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249277_3250285_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250429_3251152_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3251167_3252190_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252506_3253241_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253325_3255071_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255067_3255820_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255864_3256821_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256909_3257476_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257483_3258344_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258373_3259102_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3259133_3259817_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260654_3261569_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261633_3262542_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262632_3264057_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264058_3265381_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265377_3267516_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267593_3272714_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272814_3273123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273192_3273750_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273765_3275247_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3277417_3278755_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278789_3280787_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280804_3282853_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282983_3283850_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284118_3285084_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285198_3286347_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3286771_3287083_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287116_3287377_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287526_3288660_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288730_3289867_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290032_3290827_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290889_3291333_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291448_3292399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3292500_3292929_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3293001_3295197_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295418_3296369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296328_3296853_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296984_3297956_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298075_3300520_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300535_3301126_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301369_3302320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3302477_3303743_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3303776_3304874_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3305528_3306479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	3317766	3417879	4103417	tail,terminase,transposase,protease,tRNA	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3317766_3318717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319448_3319826_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319810_3320512_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320655_3321348_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321347_3322451_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322560_3324933_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324929_3326489_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326513_3327311_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327342_3328488_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328592_3330035_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330037_3331267_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333404_3334355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3335484_3336042_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336017_3336368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3336536_3337331_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3337327_3338377_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3338376_3339066_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3339152_3339650_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3339681_3340998_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341014_3341989_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342025_3342484_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3342483_3343164_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3343166_3343595_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3343647_3345378_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345443_3346016_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345996_3346683_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347038_3347710_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348038_3348260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348259_3348541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348537_3349053_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349052_3349604_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349582_3349825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349829_3350642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350641_3350905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350945_3351143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351123_3351540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351544_3355501_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355493_3355883_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355879_3356413_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356480_3356840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356849_3359462_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359487_3359778_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359795_3360125_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3360134_3360653_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360907_3361408_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361415_3361838_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361834_3362233_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362229_3362625_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3362624_3362825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362826_3363309_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363371_3363623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364297_3365248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365676_3366279_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366401_3366644_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366649_3367705_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367733_3369152_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3369154_3370432_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370418_3370904_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371543_3372494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3372511_3372733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3372750_3373440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373432_3373684_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3374238_3374850_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374921_3375128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3375379_3376330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3376428_3377502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3377669_3378464_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3378503_3379028_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3379020_3380763_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3380972_3381731_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3381733_3382441_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3382457_3383339_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3383349_3384108_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384076_3384832_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3384901_3386320_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3386341_3386992_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3387125_3387461_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3387549_3388500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388576_3390397_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390401_3391475_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391597_3392566_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392639_3393551_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393569_3394142_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394222_3394771_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394770_3396360_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396429_3396669_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396709_3397735_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397800_3398982_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3399078_3399531_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399540_3400881_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3401197_3402235_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402616_3402976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3403059_3404001_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404075_3405026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405319_3406414_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3406495_3407377_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407398_3408238_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408313_3409831_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409927_3411028_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3411044_3411467_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3411489_3411702_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411748_3412669_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412851_3413601_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413603_3413933_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3414139_3415573_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3415584_3415968_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3416029_3416830_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416928_3417879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP010265	Bordetella pertussis strain I669 chromosome, complete genome	4103417	4025588	4079020	4103417	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4025588_4026539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026708_4027935_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028134_4029001_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028993_4029956_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030056_4031007_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031105_4032056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032154_4033105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033101_4034595_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034591_4037699_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037695_4040764_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040760_4042011_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4042191_4042953_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4042985_4043636_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4043638_4044478_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044718_4045462_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4045544_4045892_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045989_4046832_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046876_4047764_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047790_4047979_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048076_4049534_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049520_4051047_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051065_4051533_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4051532_4052555_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4052675_4053395_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4053470_4054571_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054572_4055763_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055882_4056899_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057217_4057889_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057885_4058794_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059005_4059653_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4063504_4064581_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064591_4065401_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065490_4066264_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4066264_4066429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4066446_4067397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4067285_4068308_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4068297_4069452_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4069491_4070904_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4071028_4071895_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4071896_4072721_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4072717_4073479_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4073559_4074246_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4074419_4075427_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4075423_4076203_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4076260_4077523_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078069_4079020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
