assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001611015.1_ASM161101v1	NZ_CP013347	Paraburkholderia caribensis strain Bcrs1W chromosome 1, complete sequence	1	1201380-1201530	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	Orphan	GAAAAGTCAAACGCCGAGCGCGAATTGCATGATGCCGCGACGCAAACCACCC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA,NA	NA|307aa|up_9|NZ_CP013347.1_1188856_1189777_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|649aa|up_8|NZ_CP013347.1_1189787_1191734_-	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|671aa|up_7|NZ_CP013347.1_1191730_1193743_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|268aa|up_6|NZ_CP013347.1_1193842_1194646_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|389aa|up_5|NZ_CP013347.1_1194659_1195826_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|352aa|up_4|NZ_CP013347.1_1196027_1197083_-	cd06312, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	NA|294aa|up_3|NZ_CP013347.1_1197376_1198258_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|340aa|up_2|NZ_CP013347.1_1198250_1199270_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|340aa|up_1|NZ_CP013347.1_1199269_1200289_+	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|77aa|up_0|NZ_CP013347.1_1200417_1200648_+	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD	NA|294aa|down_0|NZ_CP013347.1_1201551_1202433_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|958aa|down_1|NZ_CP013347.1_1202504_1205378_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|789aa|down_2|NZ_CP013347.1_1205592_1207959_+	PRK11773, uvrD, DNA-dependent helicase II; Provisional	NA|263aa|down_3|NZ_CP013347.1_1207955_1208744_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|636aa|down_4|NZ_CP013347.1_1208768_1210676_-	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|417aa|down_5|NZ_CP013347.1_1211631_1212882_-	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|556aa|down_6|NZ_CP013347.1_1213341_1215009_+	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|287aa|down_7|NZ_CP013347.1_1215816_1216677_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|67aa|down_8|NZ_CP013347.1_1216690_1216891_-	pfam07869, DUF1656, Protein of unknown function (DUF1656)	NA|746aa|down_9|NZ_CP013347.1_1216880_1219118_-	pfam04632, FUSC, Fusaric acid resistance protein family
GCF_001611015.1_ASM161101v1	NZ_CP013347	Paraburkholderia caribensis strain Bcrs1W chromosome 1, complete sequence	2	1470189-1470281	2	CRISPRCasFinder	no	DinG	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	Type IV-A	TGGTGTTCTGGGCTTTGCGCTGG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|51aa|up_1|NZ_CP013347.1_1468050_1468203_+,NA|410aa|down_7|NZ_CP013347.1_1481237_1482467_-	NA|79aa|up_9|NZ_CP013347.1_1460260_1460497_+	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|415aa|up_8|NZ_CP013347.1_1460555_1461800_+	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|463aa|up_7|NZ_CP013347.1_1461830_1463219_+	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|306aa|up_6|NZ_CP013347.1_1463230_1464148_+	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|64aa|up_5|NZ_CP013347.1_1464191_1464383_+	pfam09838, DUF2065, Uncharacterized protein conserved in bacteria (DUF2065)	NA|388aa|up_4|NZ_CP013347.1_1464632_1465796_+	PRK12421, PRK12421, ATP phosphoribosyltransferase regulatory subunit; Provisional	NA|449aa|up_3|NZ_CP013347.1_1466016_1467363_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|195aa|up_2|NZ_CP013347.1_1467365_1467950_+	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only]	NA|51aa|up_1|NZ_CP013347.1_1468050_1468203_+	NA	NA|629aa|up_0|NZ_CP013347.1_1468249_1470136_+	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|779aa|down_0|NZ_CP013347.1_1472351_1474688_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|333aa|down_1|NZ_CP013347.1_1474850_1475849_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|73aa|down_2|NZ_CP013347.1_1475951_1476170_+	pfam04325, DUF465, Protein of unknown function (DUF465)	DinG|754aa|down_3|NZ_CP013347.1_1476239_1478501_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|92aa|down_4|NZ_CP013347.1_1478772_1479048_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|371aa|down_5|NZ_CP013347.1_1479279_1480392_-	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|184aa|down_6|NZ_CP013347.1_1480559_1481111_+	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|410aa|down_7|NZ_CP013347.1_1481237_1482467_-	NA	NA|893aa|down_8|NZ_CP013347.1_1482453_1485132_-	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|433aa|down_9|NZ_CP013347.1_1485247_1486546_-	PRK11195, PRK11195, lysophospholipid transporter LplT; Provisional
GCF_001611015.1_ASM161101v1	NZ_CP013347	Paraburkholderia caribensis strain Bcrs1W chromosome 1, complete sequence	3	2346942-2347034	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	Orphan	TAACGCATCGCGGATGCCAGCGAAGAAAA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|68aa|up_4|NZ_CP013347.1_2342641_2342845_-,NA|91aa|down_4|NZ_CP013347.1_2352913_2353186_+	NA|960aa|up_9|NZ_CP013347.1_2336796_2339676_-	cd10922, CE4_PelA_like_C, C-terminal Putative NodB-like catalytic domain of PelA-like uncharacterized hypothetical proteins found in bacteria	NA|272aa|up_8|NZ_CP013347.1_2340177_2340993_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|217aa|up_7|NZ_CP013347.1_2341081_2341732_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|164aa|up_6|NZ_CP013347.1_2341756_2342248_-	pfam04463, DUF523, Protein of unknown function (DUF523)	NA|54aa|up_5|NZ_CP013347.1_2342397_2342559_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|68aa|up_4|NZ_CP013347.1_2342641_2342845_-	NA	NA|224aa|up_3|NZ_CP013347.1_2343064_2343736_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|299aa|up_2|NZ_CP013347.1_2343903_2344800_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|299aa|up_1|NZ_CP013347.1_2344898_2345795_+	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]	NA|129aa|up_0|NZ_CP013347.1_2345878_2346265_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|908aa|down_0|NZ_CP013347.1_2347042_2349766_-	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional	NA|180aa|down_1|NZ_CP013347.1_2349924_2350464_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|545aa|down_2|NZ_CP013347.1_2350490_2352125_-	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|177aa|down_3|NZ_CP013347.1_2352209_2352740_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|91aa|down_4|NZ_CP013347.1_2352913_2353186_+	NA	NA|124aa|down_5|NZ_CP013347.1_2353231_2353603_-	pfam10765, DUF2591, Protein of unknown function (DUF2591)	NA|256aa|down_6|NZ_CP013347.1_2353729_2354497_+	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	NA|96aa|down_7|NZ_CP013347.1_2354509_2354797_-	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension	NA|452aa|down_8|NZ_CP013347.1_2355055_2356411_-	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|455aa|down_9|NZ_CP013347.1_2356449_2357814_-	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]
GCF_001611015.1_ASM161101v1	NZ_CP013347	Paraburkholderia caribensis strain Bcrs1W chromosome 1, complete sequence	4	2465908-2466151	1	PILER-CR	no		cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	Orphan	GGATCGTTTGCCCGTGTTTGCGCTGGCATCCGCGTGTTGTTAGCGTGCTTCACGCG	56	1	3	2466089-2466135|2466089-2466135|2466089-2466135	NZ_CP013347.1_650462-650508|NZ_CP013347.1_651358-651312|NZ_CP013347.1_651461-651415	NA	2	2	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA,NA	NA|339aa|up_9|NZ_CP013347.1_2455739_2456756_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|164aa|up_8|NZ_CP013347.1_2456858_2457350_-	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed	NA|588aa|up_7|NZ_CP013347.1_2457461_2459225_-	PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated	NA|188aa|up_6|NZ_CP013347.1_2459645_2460209_+	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated	NA|143aa|up_5|NZ_CP013347.1_2460205_2460634_+	pfam12279, DUF3619, Protein of unknown function (DUF3619)	NA|253aa|up_4|NZ_CP013347.1_2460651_2461410_+	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|178aa|up_3|NZ_CP013347.1_2461463_2461997_+	pfam06271, RDD, RDD family	NA|314aa|up_2|NZ_CP013347.1_2462951_2463893_+	COG2908, COG2908, Uncharacterized protein conserved in bacteria [Function unknown]	NA|344aa|up_1|NZ_CP013347.1_2463928_2464960_+	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|237aa|up_0|NZ_CP013347.1_2465000_2465711_+	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|239aa|down_0|NZ_CP013347.1_2466942_2467659_+	pfam13972, TetR, Bacterial transcriptional repressor	NA|195aa|down_1|NZ_CP013347.1_2467661_2468246_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|249aa|down_2|NZ_CP013347.1_2468287_2469034_+	PRK06947, PRK06947, SDR family oxidoreductase	NA|212aa|down_3|NZ_CP013347.1_2469040_2469676_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|244aa|down_4|NZ_CP013347.1_2469672_2470404_-	COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]	NA|137aa|down_5|NZ_CP013347.1_2470565_2470976_-	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like	NA|830aa|down_6|NZ_CP013347.1_2471030_2473520_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|204aa|down_7|NZ_CP013347.1_2473648_2474260_-	pfam13548, DUF4126, Domain of unknown function (DUF4126)	NA|107aa|down_8|NZ_CP013347.1_2474515_2474836_-	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE	NA|233aa|down_9|NZ_CP013347.1_2474999_2475698_-	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional
GCF_001611015.1_ASM161101v1	NZ_CP013347	Paraburkholderia caribensis strain Bcrs1W chromosome 1, complete sequence	5	3252458-3252542	4	CRISPRCasFinder	no		cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	Orphan	GGCGACGCATGAAGCGAGCTAACG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA,NA|85aa|down_5|NZ_CP013347.1_3258998_3259253_-,NA|48aa|down_6|NZ_CP013347.1_3259252_3259396_-	NA|269aa|up_9|NZ_CP013347.1_3239972_3240779_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|199aa|up_8|NZ_CP013347.1_3240930_3241527_-	PRK00170, PRK00170, azoreductase; Reviewed	NA|598aa|up_7|NZ_CP013347.1_3241694_3243488_-	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|242aa|up_6|NZ_CP013347.1_3243574_3244300_-	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold	NA|391aa|up_5|NZ_CP013347.1_3244526_3245699_-	PRK07608, PRK07608, UbiH/UbiF family hydroxylase	NA|365aa|up_4|NZ_CP013347.1_3246121_3247216_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|442aa|up_3|NZ_CP013347.1_3247491_3248817_+	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|295aa|up_2|NZ_CP013347.1_3248890_3249775_+	PRK10561, PRK10561, sn-glycerol-3-phosphate ABC transporter permease UgpA	NA|282aa|up_1|NZ_CP013347.1_3249771_3250617_+	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE	NA|364aa|up_0|NZ_CP013347.1_3250629_3251721_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|556aa|down_0|NZ_CP013347.1_3252760_3254428_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|380aa|down_1|NZ_CP013347.1_3254660_3255800_+	pfam05359, DUF748, Domain of Unknown Function (DUF748)	NA|208aa|down_2|NZ_CP013347.1_3255818_3256442_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|184aa|down_3|NZ_CP013347.1_3256438_3256990_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|605aa|down_4|NZ_CP013347.1_3257164_3258979_-	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|85aa|down_5|NZ_CP013347.1_3258998_3259253_-	NA	NA|48aa|down_6|NZ_CP013347.1_3259252_3259396_-	NA	NA|249aa|down_7|NZ_CP013347.1_3259441_3260188_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|430aa|down_8|NZ_CP013347.1_3260242_3261532_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|361aa|down_9|NZ_CP013347.1_3261675_3262758_+	PRK00591, prfA, peptide chain release factor 1; Validated
GCF_001611015.1_ASM161101v1	NZ_CP013347	Paraburkholderia caribensis strain Bcrs1W chromosome 1, complete sequence	6	3329503-3329587	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	Orphan	CGTTAGCTCGCTTCACGCGTCGCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|242aa|up_8|NZ_CP013347.1_3320974_3321700_-,NA|70aa|up_7|NZ_CP013347.1_3321730_3321940_-,NA|68aa|up_6|NZ_CP013347.1_3321956_3322160_-,NA	NA|229aa|up_9|NZ_CP013347.1_3320233_3320920_-	pfam02107, FlgH, Flagellar L-ring protein	NA|242aa|up_8|NZ_CP013347.1_3320974_3321700_-	NA	NA|70aa|up_7|NZ_CP013347.1_3321730_3321940_-	NA	NA|68aa|up_6|NZ_CP013347.1_3321956_3322160_-	NA	NA|246aa|up_5|NZ_CP013347.1_3322568_3323306_+	PRK09468, ompR, osmolarity response regulator; Provisional	NA|460aa|up_4|NZ_CP013347.1_3323247_3324627_+	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|355aa|up_3|NZ_CP013347.1_3324836_3325901_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|424aa|up_2|NZ_CP013347.1_3326156_3327428_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|423aa|up_1|NZ_CP013347.1_3327436_3328705_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|206aa|up_0|NZ_CP013347.1_3328743_3329361_-	COG1514, LigT, 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]	NA|489aa|down_0|NZ_CP013347.1_3330310_3331777_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1568aa|down_1|NZ_CP013347.1_3331878_3336582_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|236aa|down_2|NZ_CP013347.1_3336892_3337600_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|241aa|down_3|NZ_CP013347.1_3337787_3338510_+	COG3047, OmpW, Outer membrane protein W [Cell envelope biogenesis, outer membrane]	NA|128aa|down_4|NZ_CP013347.1_3338841_3339225_+	pfam05957, DUF883, Bacterial protein of unknown function (DUF883)	NA|407aa|down_5|NZ_CP013347.1_3339414_3340635_-	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|361aa|down_6|NZ_CP013347.1_3340692_3341775_-	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|184aa|down_7|NZ_CP013347.1_3341791_3342343_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|528aa|down_8|NZ_CP013347.1_3342480_3344064_-	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ	NA|305aa|down_9|NZ_CP013347.1_3344060_3344975_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_001611015.1_ASM161101v1	NZ_CP013348	Paraburkholderia caribensis strain Bcrs1W chromosome 2, complete sequence	1	301584-301672	1	CRISPRCasFinder	no		DinG,csa3,cas3,WYL	Orphan	GGCGACGCGTGAAGCACGCTAACG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA,NA	NA|426aa|up_9|NZ_CP013348.1_288844_290122_+	COG3946, VirJ, Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]	NA|767aa|up_8|NZ_CP013348.1_290791_293092_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|154aa|up_7|NZ_CP013348.1_293085_293547_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|119aa|up_6|NZ_CP013348.1_293576_293933_-	pfam04972, BON, BON domain	NA|391aa|up_5|NZ_CP013348.1_294152_295325_+	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated	NA|298aa|up_4|NZ_CP013348.1_295336_296230_-	TIGR02297, AraC-type_DNA-binding_domain-containing_protein, 4-hydroxyphenylacetate catabolism regulatory protein HpaA	NA|277aa|up_3|NZ_CP013348.1_296375_297206_+	cd05233, SDR_c, classical (c) SDRs	NA|586aa|up_2|NZ_CP013348.1_297239_298997_+	PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed	NA|113aa|up_1|NZ_CP013348.1_299008_299347_+	pfam07978, NIPSNAP, NIPSNAP	NA|455aa|up_0|NZ_CP013348.1_299417_300782_+	TIGR00895, transport_protein, benzoate transport	NA|256aa|down_0|NZ_CP013348.1_301775_302543_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|294aa|down_1|NZ_CP013348.1_302539_303421_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|305aa|down_2|NZ_CP013348.1_303422_304337_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|357aa|down_3|NZ_CP013348.1_304395_305466_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|536aa|down_4|NZ_CP013348.1_305479_307087_-	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|189aa|down_5|NZ_CP013348.1_307140_307707_-	PRK10178, PRK10178, D-alanyl-D-alanine dipeptidase; Provisional	NA|298aa|down_6|NZ_CP013348.1_307712_308606_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|488aa|down_7|NZ_CP013348.1_309053_310517_+	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|315aa|down_8|NZ_CP013348.1_310596_311541_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|163aa|down_9|NZ_CP013348.1_311631_312120_-	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]
GCF_001611015.1_ASM161101v1	NZ_CP013348	Paraburkholderia caribensis strain Bcrs1W chromosome 2, complete sequence	2	935211-935342	2	CRISPRCasFinder	no		DinG,csa3,cas3,WYL	Orphan	CCGAAAACCCGAACCGCGACGCGTGAAGCACGCTAACGT	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|338aa|up_3|NZ_CP013348.1_929289_930303_-,NA	NA|378aa|up_9|NZ_CP013348.1_920985_922119_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|569aa|up_8|NZ_CP013348.1_922186_923893_+	cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|510aa|up_7|NZ_CP013348.1_923957_925487_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|298aa|up_6|NZ_CP013348.1_926417_927311_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|266aa|up_5|NZ_CP013348.1_927311_928109_+	PRK09076, PRK09076, enoyl-CoA hydratase; Provisional	NA|390aa|up_4|NZ_CP013348.1_928105_929275_+	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|338aa|up_3|NZ_CP013348.1_929289_930303_-	NA	NA|179aa|up_2|NZ_CP013348.1_930663_931200_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|334aa|up_1|NZ_CP013348.1_931209_932211_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|745aa|up_0|NZ_CP013348.1_932234_934469_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|313aa|down_0|NZ_CP013348.1_935407_936346_-	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|257aa|down_1|NZ_CP013348.1_936668_937439_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|260aa|down_2|NZ_CP013348.1_937865_938645_-	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|109aa|down_3|NZ_CP013348.1_938747_939074_-	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|587aa|down_4|NZ_CP013348.1_939402_941163_-	pfam17991, Thioredoxin_10, Thioredoxin like C-terminal domain	NA|252aa|down_5|NZ_CP013348.1_941425_942181_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|342aa|down_6|NZ_CP013348.1_942232_943258_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|576aa|down_7|NZ_CP013348.1_943519_945247_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|424aa|down_8|NZ_CP013348.1_945565_946837_+	pfam06441, EHN, Epoxide hydrolase N-terminus	NA|67aa|down_9|NZ_CP013348.1_946876_947077_+	pfam00072, Response_reg, Response regulator receiver domain
GCF_001611015.1_ASM161101v1	NZ_CP013348	Paraburkholderia caribensis strain Bcrs1W chromosome 2, complete sequence	3	957966-958056	3	CRISPRCasFinder	no		DinG,csa3,cas3,WYL	Orphan	CGTTAGCTCGCTTCAAGCGTCGCCCCTGTGCG	32	1	5	957998-958024|957998-958024|957998-958024|957998-958024|957998-958024	NZ_CP013348.1_926231-926205|NZ_CP013348.1_504776-504750|NZ_CP013348.1_504835-504809|NZ_CP013348.1_504951-504925|NZ_CP013348.1_505008-504982	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA,NA|133aa|down_2|NZ_CP013348.1_961613_962012_-,NA|84aa|down_5|NZ_CP013348.1_964335_964587_+	NA|146aa|up_9|NZ_CP013348.1_947757_948195_+	pfam11811, DUF3331, Domain of unknown function (DUF3331)	NA|467aa|up_8|NZ_CP013348.1_948234_949635_+	PRK07487, PRK07487, amidase; Provisional	NA|144aa|up_7|NZ_CP013348.1_949684_950116_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|104aa|up_6|NZ_CP013348.1_950252_950564_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|490aa|up_5|NZ_CP013348.1_950966_952436_+	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase  AldA-like	NA|316aa|up_4|NZ_CP013348.1_952525_953473_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|150aa|up_3|NZ_CP013348.1_953498_953948_+	pfam05899, Cupin_3, Protein of unknown function (DUF861)	NA|343aa|up_2|NZ_CP013348.1_954274_955303_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|179aa|up_1|NZ_CP013348.1_955325_955862_+	pfam16694, Cytochrome_P460, Cytochrome P460	NA|620aa|up_0|NZ_CP013348.1_956029_957889_+	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|368aa|down_0|NZ_CP013348.1_958819_959923_-	TIGR03118, PEPCTERM_chp_1, TIGR03118 family protein	NA|440aa|down_1|NZ_CP013348.1_960261_961581_+	PRK12467, PRK12467, peptide synthase; Provisional	NA|133aa|down_2|NZ_CP013348.1_961613_962012_-	NA	NA|318aa|down_3|NZ_CP013348.1_962088_963042_-	cd13557, PBP2_SsuA, Substrate binding domain of sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily	NA|276aa|down_4|NZ_CP013348.1_963055_963883_-	cd13598, PBP2_lipoprotein_IlpA_like, Toll-like receptor 2-activating lipoprotein IlpA from Vibrio vulnificus and similar lipoproteins; the type 2 periplasmic binding protein fold	NA|84aa|down_5|NZ_CP013348.1_964335_964587_+	NA	NA|252aa|down_6|NZ_CP013348.1_964617_965373_-	COG4705, COG4705, Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]	NA|448aa|down_7|NZ_CP013348.1_965533_966877_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|304aa|down_8|NZ_CP013348.1_966982_967894_-	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|417aa|down_9|NZ_CP013348.1_967959_969210_-	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2
GCF_001611015.1_ASM161101v1	NZ_CP013348	Paraburkholderia caribensis strain Bcrs1W chromosome 2, complete sequence	4	1182643-1182729	4	CRISPRCasFinder	no		DinG,csa3,cas3,WYL	Orphan	ATCGCGGATGCCAGCGAAAAGGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|530aa|up_8|NZ_CP013348.1_1169230_1170820_-,NA|205aa|up_2|NZ_CP013348.1_1178443_1179058_+,NA	NA|318aa|up_9|NZ_CP013348.1_1168091_1169045_-	COG4313, COG4313, Protein involved in meta-pathway of phenol degradation [Energy production and conversion]	NA|530aa|up_8|NZ_CP013348.1_1169230_1170820_-	NA	NA|417aa|up_7|NZ_CP013348.1_1170982_1172233_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|228aa|up_6|NZ_CP013348.1_1172523_1173207_+	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|466aa|up_5|NZ_CP013348.1_1173648_1175046_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|387aa|up_4|NZ_CP013348.1_1175410_1176571_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|251aa|up_3|NZ_CP013348.1_1176904_1177657_-	pfam06629, MipA, MltA-interacting protein MipA	NA|205aa|up_2|NZ_CP013348.1_1178443_1179058_+	NA	NA|474aa|up_1|NZ_CP013348.1_1179173_1180595_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|307aa|up_0|NZ_CP013348.1_1181026_1181947_+	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|340aa|down_0|NZ_CP013348.1_1182794_1183814_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|425aa|down_1|NZ_CP013348.1_1184327_1185602_+	PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed	NA|324aa|down_2|NZ_CP013348.1_1185645_1186617_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|182aa|down_3|NZ_CP013348.1_1186650_1187196_+	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons	NA|688aa|down_4|NZ_CP013348.1_1187295_1189359_+	cd04734, OYE_like_3_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 3	NA|640aa|down_5|NZ_CP013348.1_1189361_1191281_+	pfam11982, DUF3483, Domain of unknown function (DUF3483)	NA|393aa|down_6|NZ_CP013348.1_1191284_1192463_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|down_7|NZ_CP013348.1_1192459_1193239_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|427aa|down_8|NZ_CP013348.1_1193280_1194561_+	cd08884, RHO_alpha_C_GbcA-like, C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases	NA|385aa|down_9|NZ_CP013348.1_1194613_1195768_+	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain
GCF_001611015.1_ASM161101v1	NZ_CP013348	Paraburkholderia caribensis strain Bcrs1W chromosome 2, complete sequence	5	2153934-2154017	5	CRISPRCasFinder	no		DinG,csa3,cas3,WYL	Orphan	GTTTTGCGCTGGCATCCGCGGTT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA,NA|133aa|down_6|NZ_CP013348.1_2160360_2160759_-,NA|73aa|down_7|NZ_CP013348.1_2160972_2161191_+,NA|96aa|down_8|NZ_CP013348.1_2161704_2161992_+	NA|217aa|up_9|NZ_CP013348.1_2141123_2141774_-	COG4583, COG4583, Sarcosine oxidase gamma subunit [Amino acid transport and metabolism]	NA|1000aa|up_8|NZ_CP013348.1_2141763_2144763_-	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|100aa|up_7|NZ_CP013348.1_2144759_2145059_-	pfam04267, SoxD, Sarcosine oxidase, delta subunit family	NA|415aa|up_6|NZ_CP013348.1_2145081_2146326_-	TIGR01373, Sarcosine_oxidase_subunit_beta, sarcosine oxidase, beta subunit family, heterotetrameric form	NA|463aa|up_5|NZ_CP013348.1_2146354_2147743_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|362aa|up_4|NZ_CP013348.1_2148112_2149198_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|495aa|up_3|NZ_CP013348.1_2149310_2150795_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|306aa|up_2|NZ_CP013348.1_2151011_2151929_-	PRK07340, PRK07340, delta(1)-pyrroline-2-carboxylate reductase family protein	NA|336aa|up_1|NZ_CP013348.1_2151951_2152959_-	pfam05544, Pro_racemase, Proline racemase	NA|246aa|up_0|NZ_CP013348.1_2153155_2153893_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|516aa|down_0|NZ_CP013348.1_2154781_2156329_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|317aa|down_1|NZ_CP013348.1_2156507_2157458_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|317aa|down_2|NZ_CP013348.1_2157565_2158516_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|257aa|down_3|NZ_CP013348.1_2158506_2159277_-	pfam09490, CbtA, Probable cobalt transporter subunit (CbtA)	NA|75aa|down_4|NZ_CP013348.1_2159298_2159523_-	pfam09489, CbtB, Probable cobalt transporter subunit (CbtB)	NA|192aa|down_5|NZ_CP013348.1_2159769_2160345_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|133aa|down_6|NZ_CP013348.1_2160360_2160759_-	NA	NA|73aa|down_7|NZ_CP013348.1_2160972_2161191_+	NA	NA|96aa|down_8|NZ_CP013348.1_2161704_2161992_+	NA	NA|88aa|down_9|NZ_CP013348.1_2162123_2162387_+	PRK12442, PRK12442, translation initiation factor IF-1; Reviewed
GCF_001611015.1_ASM161101v1	NZ_CP013348	Paraburkholderia caribensis strain Bcrs1W chromosome 2, complete sequence	6	2347950-2348043	6	CRISPRCasFinder	no	WYL	DinG,csa3,cas3,WYL	Unclear	CAAATCGCGGATGCCAGCGCAAAG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|152aa|up_7|NZ_CP013348.1_2338393_2338849_-,NA|114aa|down_5|NZ_CP013348.1_2354806_2355148_-	NA|508aa|up_9|NZ_CP013348.1_2336144_2337668_-	PRK10811, rne, ribonuclease E; Reviewed	NA|238aa|up_8|NZ_CP013348.1_2337676_2338390_-	cd02423, Peptidase_C39G, A sub-family of peptidase family C39	NA|152aa|up_7|NZ_CP013348.1_2338393_2338849_-	NA	NA|410aa|up_6|NZ_CP013348.1_2339051_2340281_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|410aa|up_5|NZ_CP013348.1_2340298_2341528_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|279aa|up_4|NZ_CP013348.1_2342277_2343114_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|345aa|up_3|NZ_CP013348.1_2343110_2344145_-	cd03862, M14-like, Peptidase M14-like domain; uncharacterized subfamily	NA|296aa|up_2|NZ_CP013348.1_2344455_2345343_+	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|323aa|up_1|NZ_CP013348.1_2345397_2346366_+	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein	NA|278aa|up_0|NZ_CP013348.1_2346362_2347196_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|279aa|down_0|NZ_CP013348.1_2348223_2349060_+	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein	NA|519aa|down_1|NZ_CP013348.1_2349072_2350629_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|428aa|down_2|NZ_CP013348.1_2350749_2352033_+	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase	NA|489aa|down_3|NZ_CP013348.1_2352918_2354385_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|104aa|down_4|NZ_CP013348.1_2354479_2354791_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|114aa|down_5|NZ_CP013348.1_2354806_2355148_-	NA	NA|325aa|down_6|NZ_CP013348.1_2355404_2356379_-	PRK12928, PRK12928, lipoyl synthase; Provisional	NA|371aa|down_7|NZ_CP013348.1_2356381_2357494_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|335aa|down_8|NZ_CP013348.1_2357509_2358514_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|326aa|down_9|NZ_CP013348.1_2358552_2359530_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)
GCF_001611015.1_ASM161101v1	NZ_CP013348	Paraburkholderia caribensis strain Bcrs1W chromosome 2, complete sequence	7	2365294-2365410	7	CRISPRCasFinder	no	WYL	DinG,csa3,cas3,WYL	Unclear	TTTGCTTTTGCTTTCGCTCGCATTCGCGA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|114aa|up_9|NZ_CP013348.1_2354806_2355148_-,NA	NA|114aa|up_9|NZ_CP013348.1_2354806_2355148_-	NA	NA|325aa|up_8|NZ_CP013348.1_2355404_2356379_-	PRK12928, PRK12928, lipoyl synthase; Provisional	NA|371aa|up_7|NZ_CP013348.1_2356381_2357494_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|335aa|up_6|NZ_CP013348.1_2357509_2358514_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|326aa|up_5|NZ_CP013348.1_2358552_2359530_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|377aa|up_4|NZ_CP013348.1_2359604_2360735_-	COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	NA|650aa|up_3|NZ_CP013348.1_2361187_2363137_+	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	WYL|324aa|up_2|NZ_CP013348.1_2363155_2364127_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|119aa|up_1|NZ_CP013348.1_2364219_2364576_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|129aa|up_0|NZ_CP013348.1_2364872_2365259_+	pfam11142, DUF2917, Protein of unknown function (DUF2917)	NA|401aa|down_0|NZ_CP013348.1_2366267_2367470_-	PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated	NA|275aa|down_1|NZ_CP013348.1_2367870_2368695_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|397aa|down_2|NZ_CP013348.1_2368744_2369935_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|200aa|down_3|NZ_CP013348.1_2370037_2370637_-	COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]	NA|247aa|down_4|NZ_CP013348.1_2370633_2371374_-	TIGR03223, Phn_opern_protn, putative phosphonate metabolism protein	NA|253aa|down_5|NZ_CP013348.1_2371370_2372129_-	TIGR02325, Probable_transcriptional_regulator_PhnF, phosphonates metabolism transcriptional regulator PhnF	NA|169aa|down_6|NZ_CP013348.1_2372328_2372835_+	pfam06754, PhnG, Phosphonate metabolism protein PhnG	NA|216aa|down_7|NZ_CP013348.1_2372834_2373482_+	PRK10147, phnH, phosphonate C-P lyase system protein PhnH	NA|371aa|down_8|NZ_CP013348.1_2373481_2374594_+	pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI)	NA|303aa|down_9|NZ_CP013348.1_2374590_2375499_+	pfam06007, PhnJ, Phosphonate metabolism protein PhnJ
GCF_001611015.1_ASM161101v1	NZ_CP013348	Paraburkholderia caribensis strain Bcrs1W chromosome 2, complete sequence	8	2877040-2877113	8	CRISPRCasFinder	no		DinG,csa3,cas3,WYL	Orphan	AGCGCTTACCAGGATCCCATGCCA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|68aa|up_3|NZ_CP013348.1_2873839_2874043_-,NA|109aa|up_2|NZ_CP013348.1_2874511_2874838_-,NA|46aa|down_3|NZ_CP013348.1_2881162_2881300_-,NA|85aa|down_5|NZ_CP013348.1_2881822_2882077_-	NA|187aa|up_9|NZ_CP013348.1_2866988_2867549_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|471aa|up_8|NZ_CP013348.1_2868110_2869523_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|480aa|up_7|NZ_CP013348.1_2869613_2871053_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|349aa|up_6|NZ_CP013348.1_2871049_2872096_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|174aa|up_5|NZ_CP013348.1_2872108_2872630_-	pfam08714, Fae, Formaldehyde-activating enzyme (Fae)	NA|98aa|up_4|NZ_CP013348.1_2873201_2873495_-	pfam00816, Histone_HNS, H-NS histone family	NA|68aa|up_3|NZ_CP013348.1_2873839_2874043_-	NA	NA|109aa|up_2|NZ_CP013348.1_2874511_2874838_-	NA	NA|199aa|up_1|NZ_CP013348.1_2874864_2875461_-	pfam04972, BON, BON domain	NA|489aa|up_0|NZ_CP013348.1_2875535_2877002_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|468aa|down_0|NZ_CP013348.1_2877405_2878809_+	COG2610, GntT, H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]	NA|432aa|down_1|NZ_CP013348.1_2878917_2880213_-	pfam11925, DUF3443, Protein of unknown function (DUF3443)	NA|156aa|down_2|NZ_CP013348.1_2880229_2880697_-	pfam11005, DUF2844, Protein of unknown function (DUF2844)	NA|46aa|down_3|NZ_CP013348.1_2881162_2881300_-	NA	NA|80aa|down_4|NZ_CP013348.1_2881478_2881718_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|85aa|down_5|NZ_CP013348.1_2881822_2882077_-	NA	NA|674aa|down_6|NZ_CP013348.1_2882180_2884202_-	COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]	NA|781aa|down_7|NZ_CP013348.1_2884868_2887211_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|369aa|down_8|NZ_CP013348.1_2887223_2888330_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|559aa|down_9|NZ_CP013348.1_2888804_2890481_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_001611015.1_ASM161101v1	NZ_CP013349	Paraburkholderia caribensis strain Bcrs1W chromosome 3, complete sequence	1	253652-253733	1	CRISPRCasFinder	no		csa3,cas3,WYL	Orphan	CGCGGATGCCAGCGAAAAGGCAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,RT,DinG,c2c9_V-U4,cas14j,WYL	NA|194aa|up_9|NZ_CP013349.1_243369_243951_-,NA|81aa|up_4|NZ_CP013349.1_250105_250348_-,NA|110aa|up_2|NZ_CP013349.1_250961_251291_+,NA	NA|194aa|up_9|NZ_CP013349.1_243369_243951_-	NA	NA|1361aa|up_8|NZ_CP013349.1_244047_248130_-	cd16434, CheB-CheR_fusion, Chemotaxis response regulator protein-glutamate methylesterase, CheB, fused with CheR domain	NA|330aa|up_7|NZ_CP013349.1_248215_249205_-	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB	NA|63aa|up_6|NZ_CP013349.1_249286_249475_-	PRK07201, PRK07201, SDR family oxidoreductase	NA|105aa|up_5|NZ_CP013349.1_249540_249855_-	PRK14290, PRK14290, chaperone protein DnaJ; Provisional	NA|81aa|up_4|NZ_CP013349.1_250105_250348_-	NA	NA|72aa|up_3|NZ_CP013349.1_250506_250722_+	pfam11387, DUF2795, Protein of unknown function (DUF2795)	NA|110aa|up_2|NZ_CP013349.1_250961_251291_+	NA	NA|183aa|up_1|NZ_CP013349.1_251409_251958_-	pfam13628, DUF4142, Domain of unknown function (DUF4142)	NA|208aa|up_0|NZ_CP013349.1_252192_252816_+	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|130aa|down_0|NZ_CP013349.1_253857_254247_-	pfam11533, DUF3225, Protein of unknown function (DUF3225)	NA|468aa|down_1|NZ_CP013349.1_254246_255650_-	PRK09201, PRK09201, AtzE family amidohydrolase	NA|64aa|down_2|NZ_CP013349.1_255646_255838_-	pfam13318, DUF4089, Protein of unknown function (DUF4089)	NA|384aa|down_3|NZ_CP013349.1_255849_257001_-	PRK08310, PRK08310, amidase; Provisional	NA|269aa|down_4|NZ_CP013349.1_256997_257804_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|342aa|down_5|NZ_CP013349.1_258000_259026_+	cd06304, PBP1_BmpA_Med_PnrA-like, periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria	NA|527aa|down_6|NZ_CP013349.1_259022_260603_+	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|373aa|down_7|NZ_CP013349.1_260599_261718_+	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|306aa|down_8|NZ_CP013349.1_261714_262632_+	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|238aa|down_9|NZ_CP013349.1_262705_263419_+	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain
