assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001611155.1_ASM161115v1	NZ_CP012294	Pediococcus damnosus strain TMW 2.1536 chromosome, complete genome	1	542851-543001	1	CRISPRCasFinder	no		cas3,RT,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,DinG	Orphan	TGAGGACGGCTCGACAAAGCAGAAGTCAAAATATAACTATCCTTCCCGCGGGAT	54	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,DinG	NA|112aa|up_8|NZ_CP012294.1_533106_533442_+,NA|128aa|up_2|NZ_CP012294.1_537953_538337_-,NA|86aa|down_7|NZ_CP012294.1_549259_549517_+	NA|179aa|up_9|NZ_CP012294.1_532418_532955_-	pfam08876, DUF1836, Domain of unknown function (DUF1836)	NA|112aa|up_8|NZ_CP012294.1_533106_533442_+	NA	NA|189aa|up_7|NZ_CP012294.1_533451_534018_+	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|326aa|up_6|NZ_CP012294.1_534188_535166_-	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins	NA|358aa|up_5|NZ_CP012294.1_535519_536593_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|177aa|up_4|NZ_CP012294.1_536690_537221_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|143aa|up_3|NZ_CP012294.1_537281_537710_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|128aa|up_2|NZ_CP012294.1_537953_538337_-	NA	NA|911aa|up_1|NZ_CP012294.1_538416_541149_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|462aa|up_0|NZ_CP012294.1_541396_542782_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|264aa|down_0|NZ_CP012294.1_543055_543847_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|160aa|down_1|NZ_CP012294.1_544033_544513_+	PRK02551, PRK02551, flavoprotein NrdI; Provisional	NA|287aa|down_2|NZ_CP012294.1_544575_545436_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|219aa|down_3|NZ_CP012294.1_545772_546429_+	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|264aa|down_4|NZ_CP012294.1_546514_547306_+	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|315aa|down_5|NZ_CP012294.1_547336_548281_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|137aa|down_6|NZ_CP012294.1_548374_548785_-	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|86aa|down_7|NZ_CP012294.1_549259_549517_+	NA	NA|264aa|down_8|NZ_CP012294.1_549550_550342_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|257aa|down_9|NZ_CP012294.1_550353_551124_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family
GCF_001611155.1_ASM161115v1	NZ_CP012294	Pediococcus damnosus strain TMW 2.1536 chromosome, complete genome	2	1237641-1239921	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,RT,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,DinG	Type II-A,Type II-C,Type II-B	GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC,GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC,GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC	36,36,36	0	0	NA	NA	NA:NA:NA	33,34,34	34	TypeII-A,TypeII-C,TypeII-B	cas3,RT,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,DinG	NA|82aa|up_5|NZ_CP012294.1_1230213_1230459_-,NA	NA|283aa|up_9|NZ_CP012294.1_1226909_1227758_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|168aa|up_8|NZ_CP012294.1_1227814_1228318_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|334aa|up_7|NZ_CP012294.1_1228555_1229557_-	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]	NA|161aa|up_6|NZ_CP012294.1_1229673_1230156_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|82aa|up_5|NZ_CP012294.1_1230213_1230459_-	NA	NA|171aa|up_4|NZ_CP012294.1_1230674_1231187_-	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	cas9|1386aa|up_3|NZ_CP012294.1_1231381_1235539_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|301aa|up_2|NZ_CP012294.1_1235755_1236658_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_1|NZ_CP012294.1_1236635_1236941_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|202aa|up_0|NZ_CP012294.1_1236937_1237543_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|154aa|down_0|NZ_CP012294.1_1240050_1240512_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|158aa|down_1|NZ_CP012294.1_1240604_1241078_+	pfam02464, CinA, Competence-damaged protein	NA|272aa|down_2|NZ_CP012294.1_1241218_1242034_+	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|304aa|down_3|NZ_CP012294.1_1242521_1243433_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|187aa|down_4|NZ_CP012294.1_1245078_1245639_+	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|448aa|down_5|NZ_CP012294.1_1245961_1247305_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|154aa|down_6|NZ_CP012294.1_1247526_1247988_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|457aa|down_7|NZ_CP012294.1_1248031_1249402_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|583aa|down_8|NZ_CP012294.1_1249978_1251727_+	TIGR02720, Pyruvate_oxidase, pyruvate oxidase	NA|449aa|down_9|NZ_CP012294.1_1251906_1253253_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed
GCF_001611155.1_ASM161115v1	NZ_CP012294	Pediococcus damnosus strain TMW 2.1536 chromosome, complete genome	3	1517407-1517557	3	CRISPRCasFinder	no	DinG	cas3,RT,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,DinG	Type IV-A	AGGAGCCAGTCCGACTAGCCATTTTAATGGCGTAGCGAGGATGGACATCCG	51	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,DinG	NA|1459aa|up_6|NZ_CP012294.1_1502796_1507173_+,NA|91aa|up_2|NZ_CP012294.1_1512335_1512608_+,NA|230aa|down_4|NZ_CP012294.1_1526439_1527129_+,NA|41aa|down_7|NZ_CP012294.1_1528098_1528221_-	NA|481aa|up_9|NZ_CP012294.1_1498271_1499714_+	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|471aa|up_8|NZ_CP012294.1_1499843_1501256_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|391aa|up_7|NZ_CP012294.1_1501465_1502638_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|1459aa|up_6|NZ_CP012294.1_1502796_1507173_+	NA	NA|203aa|up_5|NZ_CP012294.1_1507375_1507984_-	PRK13914, PRK13914, invasion associated endopeptidase	DinG|790aa|up_4|NZ_CP012294.1_1508150_1510520_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|431aa|up_3|NZ_CP012294.1_1510732_1512025_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|91aa|up_2|NZ_CP012294.1_1512335_1512608_+	NA	NA|702aa|up_1|NZ_CP012294.1_1512827_1514933_+	NF033396, pilus_ancill_1, pilus ancillary protein 1	NA|475aa|up_0|NZ_CP012294.1_1515046_1516471_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|218aa|down_0|NZ_CP012294.1_1517686_1518340_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|306aa|down_1|NZ_CP012294.1_1518449_1519367_+	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|477aa|down_2|NZ_CP012294.1_1523268_1524699_-	TIGR04320, hypothetical_protein, SEC10/PgrA surface exclusion domain	NA|460aa|down_3|NZ_CP012294.1_1525045_1526425_+	cd06523, GH25_PlyB-like, PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis	NA|230aa|down_4|NZ_CP012294.1_1526439_1527129_+	NA	NA|145aa|down_5|NZ_CP012294.1_1527185_1527620_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|67aa|down_6|NZ_CP012294.1_1527641_1527842_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|41aa|down_7|NZ_CP012294.1_1528098_1528221_-	NA	NA|459aa|down_8|NZ_CP012294.1_1528537_1529914_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|478aa|down_9|NZ_CP012294.1_1530098_1531532_+	PRK12704, PRK12704, phosphodiesterase; Provisional
GCF_001611155.1_ASM161115v1	NZ_CP012294	Pediococcus damnosus strain TMW 2.1536 chromosome, complete genome	4	1662987-1663126	4	CRISPRCasFinder	no		cas3,RT,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,DinG	Orphan	CCTCCTCGATTTTTAAATGACTATTTTGCATACGCAAAATC	41	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,DEDDh,WYL,cas9,cas1,cas2,csn2,DinG	NA|84aa|up_8|NZ_CP012294.1_1656256_1656508_-,NA|61aa|up_7|NZ_CP012294.1_1656905_1657088_+,NA|389aa|up_2|NZ_CP012294.1_1660891_1662058_+,NA|63aa|up_0|NZ_CP012294.1_1662790_1662979_-,NA|108aa|down_4|NZ_CP012294.1_1668933_1669257_+,NA|361aa|down_6|NZ_CP012294.1_1670399_1671482_+,NA|73aa|down_9|NZ_CP012294.1_1673164_1673383_-	NA|443aa|up_9|NZ_CP012294.1_1654855_1656184_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|84aa|up_8|NZ_CP012294.1_1656256_1656508_-	NA	NA|61aa|up_7|NZ_CP012294.1_1656905_1657088_+	NA	NA|289aa|up_6|NZ_CP012294.1_1657229_1658096_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|176aa|up_5|NZ_CP012294.1_1658105_1658633_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|127aa|up_4|NZ_CP012294.1_1659160_1659541_+	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis	NA|398aa|up_3|NZ_CP012294.1_1659686_1660880_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|389aa|up_2|NZ_CP012294.1_1660891_1662058_+	NA	NA|167aa|up_1|NZ_CP012294.1_1662070_1662571_+	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family	NA|63aa|up_0|NZ_CP012294.1_1662790_1662979_-	NA	NA|227aa|down_0|NZ_CP012294.1_1663358_1664039_+	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family	NA|151aa|down_1|NZ_CP012294.1_1664221_1664674_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|579aa|down_2|NZ_CP012294.1_1664673_1666410_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|632aa|down_3|NZ_CP012294.1_1666396_1668292_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|108aa|down_4|NZ_CP012294.1_1668933_1669257_+	NA	NA|273aa|down_5|NZ_CP012294.1_1669273_1670092_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|361aa|down_6|NZ_CP012294.1_1670399_1671482_+	NA	NA|186aa|down_7|NZ_CP012294.1_1671935_1672493_+	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|131aa|down_8|NZ_CP012294.1_1672686_1673079_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|73aa|down_9|NZ_CP012294.1_1673164_1673383_-	NA
