The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	712310	720130	2726196		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|712310_713366_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|713365_714052_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|714026_714500_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093561.1|714841_715282_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|715561_716146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|716244_716958_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|716961_717381_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|717382_718051_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|718401_718995_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|718978_720130_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	735861	746716	2726196		uncultured_Caudovirales_phage(62.5%)	10	NA	NA
WP_000193751.1|735861_737367_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|737707_738208_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|738227_739094_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|739894_740293_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|740255_742361_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|742478_743450_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|743849_744005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|744043_745015_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|745001_745958_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|745954_746716_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	921909	963578	2726196	bacteriocin,tRNA,protease,transposase	Streptococcus_phage(40.0%)	37	NA	NA
WP_000448934.1|921909_922899_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|923193_923589_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_000277718.1|923652_925299_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.4	7.2e-288
WP_001217728.1|925879_926599_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959289.1|926719_927706_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|927753_929562_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|930021_930828_-|protease	protease adaptor protein YjbH	protease	NA	NA	NA	NA
WP_000214069.1|930850_931216_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224619.1|931319_931913_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|932098_932446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|932462_933098_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|933114_933924_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669923.1|933920_934775_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|934795_936181_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395152.1|936190_938035_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|938312_939083_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|939278_940364_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570700.1|940704_942273_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889191.1|942417_943176_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|943369_943879_+	YjcG family protein	NA	NA	NA	NA	NA
WP_001154224.1|943991_945182_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|945159_946335_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|946767_948252_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|948232_948493_+	YueH family protein	NA	NA	NA	NA	NA
WP_001049951.1|948492_950055_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|950356_951160_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_000455278.1|951378_953703_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|953719_955078_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414185.1|955216_956728_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|957214_957784_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|957993_958212_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|958292_959279_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|959477_959654_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|959668_960271_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031763719.1|961186_961288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|961297_961570_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870832.1|961613_963578_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	997788	1006261	2726196		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|997788_998271_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010414.1|998257_999382_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174044.1|999385_1000090_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	8.1e-47
WP_000848350.1|1000089_1000353_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1000354_1001026_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032733.1|1001018_1003208_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	2.7e-141
WP_000483713.1|1003186_1004671_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030811.1|1004663_1005692_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238675.1|1005694_1006261_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	7.2e-30
>prophage 5
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	1058103	1117201	2726196	tail,holin,tRNA,portal,terminase,head,plate,capsid	Staphylococcus_phage(67.14%)	84	NA	NA
WP_000401377.1|1058103_1058586_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843616.1|1058647_1059787_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872155.1|1059913_1060471_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|1060550_1060724_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000861313.1|1060840_1062226_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000337827.1|1062334_1062514_+	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_000392183.1|1062493_1063426_-	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000525007.1|1063457_1063922_-	hypothetical protein	NA	A0A0N9BAX8	Staphylococcus_phage	100.0	8.4e-85
WP_000333630.1|1063934_1064249_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121116.1|1064400_1064637_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000438352.1|1064650_1064830_+	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	100.0	1.7e-25
WP_000394410.1|1064930_1065413_-	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_001148563.1|1065472_1066264_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDX0	Staphylococcus_phage	99.6	3.2e-145
WP_000187184.1|1066264_1066489_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_190362524.1|1066528_1066705_+	hypothetical protein	NA	S4SVC9	Staphylococcus_phage	98.3	6.3e-25
WP_000395457.1|1066679_1066910_-	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
WP_000066011.1|1067089_1067251_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291089.1|1067347_1067608_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000815402.1|1067617_1067839_+	DUF2483 family protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
WP_000139720.1|1067831_1068455_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934385.1|1068454_1068883_+	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
WP_001124437.1|1068896_1069565_+	hypothetical protein	NA	R4IH15	Staphylococcus_phage	97.7	4.9e-126
WP_000429731.1|1069750_1070161_-	hypothetical protein	NA	Q4ZDQ7	Staphylococcus_virus	100.0	1.5e-72
WP_000132051.1|1070222_1070954_+	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	78.8	9.8e-80
WP_000443353.1|1070966_1071752_+	ATP-binding protein	NA	A0A0H4J332	Staphylococcus_phage	100.0	1.9e-145
WP_000628837.1|1071748_1071907_+	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	100.0	3.4e-22
WP_015984512.1|1071919_1072141_+	DUF3269 family protein	NA	A1KX75	Staphylococcus_virus	100.0	2.2e-35
WP_000049794.1|1072150_1072555_+	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
WP_001187243.1|1072559_1072745_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|1072745_1073051_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_000029376.1|1073178_1073535_+	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_015984514.1|1073538_1073781_+	hypothetical protein	NA	A1KX80	Staphylococcus_virus	100.0	1.1e-40
WP_000982708.1|1073845_1074295_+	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_001624703.1|1074291_1074657_+	hypothetical protein	NA	A1KX82	Staphylococcus_virus	100.0	4.2e-63
WP_017804684.1|1074649_1074904_+	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	100.0	1.4e-38
WP_000714413.1|1074890_1075061_+	hypothetical protein	NA	A1KX84	Staphylococcus_virus	100.0	9.7e-23
WP_015984517.1|1075053_1075590_+	dUTP diphosphatase	NA	A1KX85	Staphylococcus_virus	100.0	4.6e-95
WP_015984518.1|1075626_1075821_+	DUF1381 domain-containing protein	NA	A1KX86	Staphylococcus_virus	100.0	7.4e-27
WP_015984519.1|1075820_1076345_+	hypothetical protein	NA	A1KX87	Staphylococcus_virus	100.0	9.2e-80
WP_000595258.1|1076391_1076565_+	transcriptional activator RinB	NA	A1KX88	Staphylococcus_virus	100.0	3.7e-22
WP_000990005.1|1076565_1076712_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000162701.1|1076735_1077158_+	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_000594088.1|1077488_1077983_+|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037578.1|1077975_1079199_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_000177422.1|1079195_1080620_+|portal	phage portal protein	portal	Q4ZBZ7	Staphylococcus_virus	100.0	6.2e-272
WP_015984520.1|1080588_1081542_+|capsid	minor capsid protein	capsid	A1KX94	Staphylococcus_virus	100.0	6.0e-178
WP_000346032.1|1081543_1081750_+	hypothetical protein	NA	A0A2H4JAK3	uncultured_Caudovirales_phage	100.0	1.4e-28
WP_001019221.1|1081852_1082437_+	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	100.0	7.3e-78
WP_000235168.1|1082453_1083368_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000002931.1|1083379_1083523_+	hypothetical protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
WP_000177351.1|1083528_1083879_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000483040.1|1083890_1084226_+|head	phage head closure protein	head	Q4ZBR2	Staphylococcus_phage	100.0	8.8e-60
WP_001151330.1|1084212_1084626_+	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	100.0	1.1e-75
WP_000270192.1|1084638_1085064_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_000057582.1|1085064_1085622_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|1085687_1086194_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880587.1|1086238_1086523_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_062911907.1|1086526_1089496_+	hypothetical protein	NA	A0A2H4JGV1	uncultured_Caudovirales_phage	86.9	3.5e-277
WP_062911908.1|1089510_1090452_+|tail	phage tail family protein	tail	Q4ZBQ4	Staphylococcus_phage	99.4	2.6e-181
WP_062911909.1|1090462_1092346_+|tail	phage tail protein	tail	Q4ZBQ3	Staphylococcus_phage	98.2	0.0e+00
WP_062911910.1|1092358_1094257_+	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	97.8	0.0e+00
WP_023487056.1|1094256_1096080_+|plate	BppU family phage baseplate upper protein	plate	M9NUJ5	Staphylococcus_phage	97.7	1.8e-292
WP_000705893.1|1096079_1096457_+	DUF2977 domain-containing protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
WP_001790193.1|1096460_1096634_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|1096674_1096974_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_000524043.1|1097110_1098985_+	glucosaminidase domain-containing protein	NA	Q4ZBP7	Staphylococcus_phage	100.0	0.0e+00
WP_062911911.1|1098997_1100170_+|plate	BppU family phage baseplate upper protein	plate	I1W629	Staphylococcus_phage	99.5	5.4e-197
WP_000398878.1|1100175_1100571_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_000354132.1|1100626_1101064_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_001148137.1|1101044_1102490_+	SH3 domain-containing protein	NA	Q4ZAM7	Staphylococcus_virus	100.0	1.8e-295
WP_000448197.1|1102878_1103466_+	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
WP_000971220.1|1103462_1103918_+	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
WP_001041598.1|1104087_1106022_-	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000160844.1|1106224_1107277_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_000789822.1|1107485_1108169_+	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_001246683.1|1108168_1109245_+	iron-regulated surface determinant protein IsdD	NA	NA	NA	NA	NA
WP_001220194.1|1109241_1110120_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_000594537.1|1110132_1111098_+	hemin ABC transporter permease protein IsdF	NA	NA	NA	NA	NA
WP_001242405.1|1111159_1111894_+	class B sortase	NA	NA	NA	NA	NA
WP_000670946.1|1111912_1112236_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_031835094.1|1112272_1112380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435374.1|1112619_1113360_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_000003566.1|1113740_1114799_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000908976.1|1114798_1117201_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	1590057	1598387	2726196	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1590057_1590843_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1590968_1591859_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_062911920.1|1591868_1593215_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.3	3.7e-56
WP_000683933.1|1593328_1594429_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1594431_1595109_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1595239_1596346_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217252.1|1596569_1598387_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 7
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	1666240	1675283	2726196	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1666240_1666759_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1666780_1669054_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749789.1|1669256_1671536_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1671810_1672071_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1672089_1673229_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1673251_1674277_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005769.1|1674278_1675283_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	1799738	1866224	2726196	tRNA,protease	Staphylococcus_phage(95.65%)	64	NA	NA
WP_001641584.1|1799738_1806299_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	97.1	1.3e-300
WP_000836465.1|1806624_1806936_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001557386.1|1806957_1809375_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025061.1|1809662_1810844_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1810953_1811907_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1811903_1812467_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1812586_1812988_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1813559_1814387_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1814389_1814509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196360.1|1814620_1815622_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	7.7e-184
WP_001008551.1|1815743_1816208_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001175484.1|1816220_1817402_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.5e-226
WP_000493886.1|1817412_1818045_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000077344.1|1818051_1819095_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_001261679.1|1819575_1821078_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1821600_1821915_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1821914_1823207_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163236.1|1823224_1823620_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	3.1e-72
WP_001032833.1|1823914_1824769_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1825044_1825269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1825467_1825938_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153745.1|1826050_1826494_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1826480_1826924_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168904.1|1827219_1827855_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1828294_1829008_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1829267_1829570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1829825_1830191_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1830187_1830541_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453317.1|1832638_1833472_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000366155.1|1833683_1834592_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000933822.1|1834716_1835910_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1836281_1837874_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1838251_1838998_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672015.1|1839002_1839476_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_000718107.1|1839541_1839799_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778538.1|1839795_1840797_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	9.0e-185
WP_000348365.1|1840801_1842280_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_072414246.1|1842438_1842894_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.5e-78
WP_001795535.1|1843196_1843847_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070655.1|1843927_1844923_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1844998_1845625_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1845665_1846007_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1846107_1846680_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864136.1|1846877_1847435_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	3.7e-79
WP_000375476.1|1847805_1847982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731412.1|1849089_1849533_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731418.1|1849532_1849976_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000745473.1|1849975_1850419_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000221410.1|1850957_1853381_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_062911924.1|1853504_1853882_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000759947.1|1854087_1854528_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000926706.1|1854572_1856186_+	lipase	NA	NA	NA	NA	NA
WP_000095395.1|1856200_1856500_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_000072556.1|1856626_1857862_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.2	6.4e-47
WP_000028658.1|1857854_1859411_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	3.4e-287
WP_031835054.1|1859574_1859709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038693.1|1859775_1860495_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	1.2e-130
WP_001038760.1|1860645_1861362_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.6	3.2e-131
WP_103150108.1|1861463_1861571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038723.1|1861519_1862239_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	4.3e-128
WP_001038866.1|1862359_1863079_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	3.5e-130
WP_001039455.1|1863136_1863859_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	1.2e-130
WP_062911925.1|1863983_1864691_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.3	1.5e-122
WP_001092783.1|1865654_1866224_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
>prophage 9
NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2726196	1996758	2002437	2726196		Staphylococcus_phage(100.0%)	6	NA	NA
WP_000669789.1|1996758_1996938_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1997248_1997509_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|1997561_1997912_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727643.1|1998594_1999044_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000595392.1|2000343_2001360_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|2001381_2002437_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
