assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001611425.1_ASM161142v1	NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	1	775083-775163	1	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	13	775109-775137|775109-775137|775109-775137|775109-775137|775109-775137|775109-775137|775109-775137|775109-775137|775109-775137|775109-775137|775109-775137|775109-775137|775109-775137	NZ_CP012970.1_1136545-1136517|NZ_CP012970.1_2685005-2685033|NZ_CP012970.1_249587-249559|NZ_CP012970.1_331996-331968|NZ_CP012970.1_332051-332023|NZ_CP012970.1_1618453-1618481|NZ_CP012970.1_1739520-1739492|NZ_CP012970.1_1794712-1794684|NZ_CP012970.1_130269-130241|NZ_CP012970.1_130327-130299|NZ_CP012970.1_1224560-1224532|NZ_CP012970.1_1952478-1952506|NZ_CP012970.1_2441188-2441160	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NZ_CP012970.1_765996_766101_+,NA|36aa|up_5|NZ_CP012970.1_767533_767641_+,NA	NA|191aa|up_9|NZ_CP012970.1_762437_763010_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP012970.1_763423_765955_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP012970.1_765996_766101_+	NA	NA|370aa|up_6|NZ_CP012970.1_766269_767380_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP012970.1_767533_767641_+	NA	NA|280aa|up_4|NZ_CP012970.1_767788_768628_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP012970.1_768801_769452_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP012970.1_769448_769685_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP012970.1_769953_771939_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP012970.1_771946_774793_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP012970.1_775399_776332_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP012970.1_776337_777177_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP012970.1_777184_777670_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP012970.1_777677_779117_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP012970.1_779183_780119_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP012970.1_780943_781855_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP012970.1_781851_782847_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP012970.1_782957_783902_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP012970.1_784474_785062_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP012970.1_785304_786207_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001611425.1_ASM161142v1	NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	2	780576-780659	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TCTGTGTTGGCGCCCACACCCCAACT	26	1	5	780602-780633|780602-780633|780602-780633|780602-780633|780602-780633	NZ_CP012970.1_1022725-1022756|NZ_CP012970.1_1348067-1348036|NZ_CP012970.1_1435742-1435773|NZ_CP012970.1_1943070-1943101|NZ_CP012970.1_1651016-1651047	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP012970.1_767788_768628_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP012970.1_768801_769452_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP012970.1_769448_769685_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP012970.1_769953_771939_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP012970.1_771946_774793_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP012970.1_775399_776332_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP012970.1_776337_777177_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP012970.1_777184_777670_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP012970.1_777677_779117_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP012970.1_779183_780119_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP012970.1_780943_781855_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP012970.1_781851_782847_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP012970.1_782957_783902_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP012970.1_784474_785062_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP012970.1_785304_786207_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP012970.1_786909_787539_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP012970.1_788236_789250_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP012970.1_789302_790313_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP012970.1_790450_791641_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP012970.1_791762_792524_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_001611425.1_ASM161142v1	NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	3	996084-996225	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCATCCCCCAACTTGCA	26	2	22	996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996110-996140|996167-996199|996167-996199|996167-996199	NZ_CP012970.1_130265-130235|NZ_CP012970.1_130323-130293|NZ_CP012970.1_996226-996256|NZ_CP012970.1_1022729-1022759|NZ_CP012970.1_1224556-1224526|NZ_CP012970.1_1348063-1348033|NZ_CP012970.1_1435746-1435776|NZ_CP012970.1_1943074-1943104|NZ_CP012970.1_2441184-2441154|NZ_CP012970.1_249583-249553|NZ_CP012970.1_249638-249608|NZ_CP012970.1_331992-331962|NZ_CP012970.1_332047-332017|NZ_CP012970.1_896429-896459|NZ_CP012970.1_1618457-1618487|NZ_CP012970.1_1651020-1651050|NZ_CP012970.1_1794708-1794678|NZ_CP012970.1_1136541-1136511|NZ_CP012970.1_1952482-1952512|NZ_CP012970.1_331879-331847|NZ_CP012970.1_996283-996315|NZ_CP012970.1_1435687-1435719	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|41aa|up_1|NZ_CP012970.1_995104_995227_+,NA	NA|145aa|up_9|NZ_CP012970.1_986327_986762_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|157aa|up_8|NZ_CP012970.1_986916_987387_-	pfam10804, DUF2538, Protein of unknown function (DUF2538)	NA|406aa|up_7|NZ_CP012970.1_987434_988652_-	COG1316, LytR, Transcriptional regulator [Transcription]	NA|398aa|up_6|NZ_CP012970.1_989102_990296_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|93aa|up_5|NZ_CP012970.1_990832_991111_-	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|202aa|up_4|NZ_CP012970.1_991119_991725_-	TIGR02897, AA3-600_quinol_oxidase_subunit_III, cytochrome aa3 quinol oxidase, subunit III	NA|663aa|up_3|NZ_CP012970.1_991714_993703_-	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|367aa|up_2|NZ_CP012970.1_993702_994803_-	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|41aa|up_1|NZ_CP012970.1_995104_995227_+	NA	NA|106aa|up_0|NZ_CP012970.1_995374_995692_-	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|287aa|down_0|NZ_CP012970.1_996727_997588_-	PRK14175, PRK14175, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|161aa|down_1|NZ_CP012970.1_997788_998271_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|375aa|down_2|NZ_CP012970.1_998257_999382_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|235aa|down_3|NZ_CP012970.1_999385_1000090_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|88aa|down_4|NZ_CP012970.1_1000089_1000353_+	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]	NA|224aa|down_5|NZ_CP012970.1_1000354_1001026_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|down_6|NZ_CP012970.1_1001018_1003208_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|down_7|NZ_CP012970.1_1003186_1004671_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|down_8|NZ_CP012970.1_1004663_1005692_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|down_9|NZ_CP012970.1_1005694_1006261_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
GCF_001611425.1_ASM161142v1	NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	4	1651048-1651133	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTGTGTTGGGGCCCCATCCCCAACTT	27	1	8	1651075-1651106|1651075-1651106|1651075-1651106|1651075-1651106|1651075-1651106|1651075-1651106|1651075-1651106|1651075-1651106	NZ_CP012970.1_234395-234426|NZ_CP012970.1_331882-331851|NZ_CP012970.1_996280-996311|NZ_CP012970.1_1140740-1140709|NZ_CP012970.1_1224501-1224470|NZ_CP012970.1_1348125-1348094|NZ_CP012970.1_1435684-1435715|NZ_CP012970.1_1794765-1794734	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NZ_CP012970.1_1655138_1655285_-,NA|43aa|down_8|NZ_CP012970.1_1658321_1658450_-	NA|208aa|up_9|NZ_CP012970.1_1639785_1640409_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP012970.1_1640408_1641677_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP012970.1_1641688_1642612_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP012970.1_1642614_1643253_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP012970.1_1643537_1643846_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP012970.1_1643860_1644289_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP012970.1_1644292_1644553_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP012970.1_1644615_1647246_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP012970.1_1647588_1650066_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP012970.1_1650067_1650736_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP012970.1_1651315_1652434_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP012970.1_1652434_1653577_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP012970.1_1653888_1654902_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP012970.1_1655138_1655285_-	NA	NA|61aa|down_4|NZ_CP012970.1_1655324_1655507_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP012970.1_1655606_1656029_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP012970.1_1656113_1657388_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP012970.1_1657548_1658322_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP012970.1_1658321_1658450_-	NA	NA|589aa|down_9|NZ_CP012970.1_1658782_1660549_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_001611425.1_ASM161142v1	NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	5	1737185-1737267	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|38aa|down_4|NZ_CP012970.1_1741720_1741834_-	NA|423aa|up_9|NZ_CP012970.1_1721564_1722833_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP012970.1_1722881_1724003_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP012970.1_1724350_1725712_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP012970.1_1726059_1727817_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP012970.1_1727838_1728807_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP012970.1_1729075_1730020_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP012970.1_1730019_1730877_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP012970.1_1731071_1732301_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP012970.1_1732750_1735948_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP012970.1_1735968_1736910_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP012970.1_1737361_1738660_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP012970.1_1738864_1739278_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP012970.1_1739722_1740412_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP012970.1_1740586_1741642_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|38aa|down_4|NZ_CP012970.1_1741720_1741834_-	NA	NA|373aa|down_5|NZ_CP012970.1_1741957_1743076_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP012970.1_1743216_1743717_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP012970.1_1743962_1745165_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP012970.1_1745252_1746200_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP012970.1_1746322_1746817_-	PRK00522, tpx, thiol peroxidase
GCF_001611425.1_ASM161142v1	NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	6	1794766-1794851	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGTTGGGGTAAGGGCCCCAACACAGA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP012970.1_1785266_1785863_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP012970.1_1785891_1786749_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP012970.1_1786848_1787160_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP012970.1_1787224_1788301_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP012970.1_1788387_1788699_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP012970.1_1788823_1789666_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP012970.1_1790145_1790790_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP012970.1_1790804_1791596_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP012970.1_1792145_1792994_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP012970.1_1792997_1794407_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP012970.1_1795154_1795577_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP012970.1_1795593_1796289_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP012970.1_1796285_1797947_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP012970.1_1798353_1799622_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP012970.1_1799738_1806299_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP012970.1_1806624_1806936_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP012970.1_1806957_1809375_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP012970.1_1809662_1810844_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP012970.1_1810953_1811907_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP012970.1_1811903_1812467_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_001611425.1_ASM161142v1	NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	7	2365591-2365684	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GCGCATGCATAAAAGCCCCTAACAACCTGAGGT	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_9|NZ_CP012970.1_2354723_2354840_-,NA	NA|39aa|up_9|NZ_CP012970.1_2354723_2354840_-	NA	NA|144aa|up_8|NZ_CP012970.1_2354944_2355376_-	pfam11070, DUF2871, Protein of unknown function (DUF2871)	NA|426aa|up_7|NZ_CP012970.1_2355582_2356860_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|208aa|up_6|NZ_CP012970.1_2357020_2357644_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|315aa|up_5|NZ_CP012970.1_2357689_2358634_+	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|481aa|up_4|NZ_CP012970.1_2358719_2360162_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|128aa|up_3|NZ_CP012970.1_2360344_2360728_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|702aa|up_2|NZ_CP012970.1_2362215_2364321_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|141aa|up_1|NZ_CP012970.1_2364391_2364814_+	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only]	NA|119aa|up_0|NZ_CP012970.1_2365078_2365435_+	pfam16230, DUF4889, Domain of unknown function (DUF4889)	NA|426aa|down_0|NZ_CP012970.1_2365716_2366994_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|122aa|down_1|NZ_CP012970.1_2367175_2367541_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|149aa|down_2|NZ_CP012970.1_2367938_2368385_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|143aa|down_3|NZ_CP012970.1_2368600_2369029_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|390aa|down_4|NZ_CP012970.1_2369135_2370305_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|247aa|down_5|NZ_CP012970.1_2371567_2372308_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|218aa|down_6|NZ_CP012970.1_2372563_2373217_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|345aa|down_7|NZ_CP012970.1_2373239_2374274_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|151aa|down_8|NZ_CP012970.1_2374297_2374750_-	pfam01590, GAF, GAF domain	NA|226aa|down_9|NZ_CP012970.1_2374769_2375447_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit
GCF_001611425.1_ASM161142v1	NZ_CP012970	Staphylococcus aureus strain ST20130939 chromosome, complete genome	8	2400422-2400519	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCTGCGAATTTTATGAGCTAGAAAGGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP012970.1_2398144_2398249_+,NA|40aa|down_0|NZ_CP012970.1_2400697_2400817_-	NA|200aa|up_9|NZ_CP012970.1_2391621_2392221_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP012970.1_2392239_2392602_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP012970.1_2392856_2394107_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP012970.1_2394203_2394935_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP012970.1_2394931_2395651_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP012970.1_2395631_2396411_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP012970.1_2396531_2397971_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP012970.1_2398144_2398249_+	NA	NA|229aa|up_1|NZ_CP012970.1_2398402_2399089_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP012970.1_2399415_2400282_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|40aa|down_0|NZ_CP012970.1_2400697_2400817_-	NA	NA|438aa|down_1|NZ_CP012970.1_2400911_2402225_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP012970.1_2402760_2403690_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP012970.1_2404256_2405204_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP012970.1_2405205_2406183_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP012970.1_2406234_2406702_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP012970.1_2406712_2407405_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP012970.1_2407415_2408531_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP012970.1_2408508_2409516_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP012970.1_2409517_2410876_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
