assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001612495.1_ASM161249v1	NZ_CP015023	Escherichia coli strain SRCC 1675 chromosome, complete genome	1	1650202-1650414	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol,RT	NA,NA	NA|254aa|up_9|NZ_CP015023.1_1642014_1642776_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP015023.1_1642756_1643806_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP015023.1_1643802_1644282_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP015023.1_1644281_1644992_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP015023.1_1645010_1645322_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP015023.1_1645515_1645839_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP015023.1_1645888_1646494_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP015023.1_1646493_1647921_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP015023.1_1647922_1648831_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP015023.1_1649082_1650120_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP015023.1_1650509_1650803_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP015023.1_1650799_1651723_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP015023.1_1651719_1652370_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP015023.1_1652351_1653098_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP015023.1_1653108_1654164_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP015023.1_1654175_1654712_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP015023.1_1654708_1656271_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP015023.1_1656368_1659068_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP015023.1_1659259_1659412_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP015023.1_1659675_1660410_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001612495.1_ASM161249v1	NZ_CP015023	Escherichia coli strain SRCC 1675 chromosome, complete genome	2	1676106-1676194	2	CRISPRCasFinder	no	cas3	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol,RT	NA,NA	NA|600aa|up_9|NZ_CP015023.1_1662195_1663995_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_8|NZ_CP015023.1_1664313_1664676_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP015023.1_1664753_1666025_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP015023.1_1666015_1666276_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP015023.1_1666292_1666868_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP015023.1_1667872_1668652_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP015023.1_1670059_1671514_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP015023.1_1671583_1672369_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP015023.1_1672687_1673965_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP015023.1_1673991_1675470_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP015023.1_1676533_1677205_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP015023.1_1677359_1677980_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP015023.1_1677993_1678668_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP015023.1_1678901_1680050_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP015023.1_1680046_1680961_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP015023.1_1681020_1682319_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP015023.1_1682406_1684044_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP015023.1_1684271_1685063_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP015023.1_1685133_1685469_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP015023.1_1685468_1685717_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_001612495.1_ASM161249v1	NZ_CP015023	Escherichia coli strain SRCC 1675 chromosome, complete genome	3	3385686-3385835	3	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol,RT	NA|591aa|up_6|NZ_CP015023.1_3376815_3378588_+,NA	NA|238aa|up_9|NZ_CP015023.1_3374718_3375432_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP015023.1_3375502_3376096_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP015023.1_3376240_3376693_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|591aa|up_6|NZ_CP015023.1_3376815_3378588_+	NA	NA|335aa|up_5|NZ_CP015023.1_3378644_3379649_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP015023.1_3379810_3380227_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP015023.1_3380272_3380776_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP015023.1_3380968_3382165_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP015023.1_3382219_3385075_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP015023.1_3385074_3385518_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP015023.1_3385871_3387383_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP015023.1_3387649_3388750_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP015023.1_3388749_3389832_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP015023.1_3389992_3391495_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP015023.1_3391624_3392644_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|650aa|down_5|NZ_CP015023.1_3393014_3394964_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|405aa|down_6|NZ_CP015023.1_3395163_3396377_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|126aa|down_7|NZ_CP015023.1_3396559_3396937_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|111aa|down_8|NZ_CP015023.1_3397058_3397391_-	pfam07978, NIPSNAP, NIPSNAP	NA|156aa|down_9|NZ_CP015023.1_3398394_3398862_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_001612495.1_ASM161249v1	NZ_CP015023	Escherichia coli strain SRCC 1675 chromosome, complete genome	4	3615788-3615922	4	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,PrimPol,RT	NA|251aa|up_4|NZ_CP015023.1_3607741_3608494_+,NA|190aa|down_7|NZ_CP015023.1_3624963_3625533_+	NA|274aa|up_9|NZ_CP015023.1_3600876_3601698_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP015023.1_3601694_3602684_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP015023.1_3602683_3603970_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP015023.1_3604022_3606377_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP015023.1_3606631_3607447_+	PRK09430, djlA, co-chaperone DjlA	NA|251aa|up_4|NZ_CP015023.1_3607741_3608494_+	NA	NA|220aa|up_3|NZ_CP015023.1_3608911_3609571_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP015023.1_3609582_3612489_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP015023.1_3612652_3615004_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP015023.1_3615078_3615774_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP015023.1_3615973_3617476_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP015023.1_3617486_3619187_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP015023.1_3619525_3620404_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP015023.1_3620489_3621254_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP015023.1_3621340_3622039_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP015023.1_3622022_3623633_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP015023.1_3623608_3624592_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP015023.1_3624963_3625533_+	NA	NA|553aa|down_8|NZ_CP015023.1_3625761_3627420_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP015023.1_3627508_3627640_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
