assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001618665.1_ASM161866v1	NZ_CP015152	Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence	1	6702-7390	1,1,1,2	PILER-CR,CRT,CRISPRCasFinder,PILER-CR	no	cas5,cas8c,cas7,RT	cas5,cas8c,cas7,RT	 Type I-U?,Type I-U,Type I-C	TGTCGCACCTCATATAGGTGCGTGGATTGAAATACAA,GTCGCACCTNATATAGGTGCGTG,ATATAGGTGCGTGGATTGAAATT,GCACCTTATATAGGTG	37,23,23,16	0	0	NA	NA	I-C:NA:NA:NA	7,9,10,7	10	TypeI-U,TypeI-U?,TypeI-C	cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4,cas5,cas8c,cas7	NA|131aa|up_2|NZ_CP015152.1_1973_2366_+,NA|306aa|up_0|NZ_CP015152.1_3255_4173_+,NA|142aa|down_6|NZ_CP015152.1_16740_17166_+,NA|76aa|down_8|NZ_CP015152.1_18536_18764_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|131aa|up_2|NZ_CP015152.1_1973_2366_+	NA	NA|261aa|up_1|NZ_CP015152.1_2458_3241_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|306aa|up_0|NZ_CP015152.1_3255_4173_+	NA	cas5|240aa|down_0|NZ_CP015152.1_10038_10758_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|640aa|down_1|NZ_CP015152.1_10758_12678_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|287aa|down_2|NZ_CP015152.1_12680_13541_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|55aa|down_3|NZ_CP015152.1_13831_13996_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|78aa|down_4|NZ_CP015152.1_14047_14281_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|52aa|down_5|NZ_CP015152.1_15645_15801_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|142aa|down_6|NZ_CP015152.1_16740_17166_+	NA	NA|364aa|down_7|NZ_CP015152.1_17429_18521_+	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	NA|76aa|down_8|NZ_CP015152.1_18536_18764_+	NA	RT|622aa|down_9|NZ_CP015152.1_20490_22356_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase
GCF_001618665.1_ASM161866v1	NZ_CP015152	Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence	2	14354-14780	2,2,3	CRT,CRISPRCasFinder,PILER-CR	no	cas5,cas8c,cas7,RT	cas5,cas8c,cas7,RT	 Type I-U?,Type I-U,Type I-C	GTCGCACCTNNTNTAGGTGCGTGGATTGAAAT,TAGTAGGTGCGTGGATTGAAATAT,AGTCGCACCTTATATAGGTGCGTGGATTGAAATAT	32,24,35	0	0	NA	NA	NA:NA:I-C	6,5,3	6	TypeI-U,TypeI-U?,TypeI-C	cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4,cas5,cas8c,cas7	NA|131aa|up_7|NZ_CP015152.1_1973_2366_+,NA|306aa|up_5|NZ_CP015152.1_3255_4173_+,NA|142aa|down_1|NZ_CP015152.1_16740_17166_+,NA|76aa|down_3|NZ_CP015152.1_18536_18764_+,NA|95aa|down_7|NZ_CP015152.1_26889_27174_-,NA|83aa|down_8|NZ_CP015152.1_27310_27559_-	NA|NA	NA	NA|NA	NA	NA|131aa|up_7|NZ_CP015152.1_1973_2366_+	NA	NA|261aa|up_6|NZ_CP015152.1_2458_3241_+	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|306aa|up_5|NZ_CP015152.1_3255_4173_+	NA	cas5|240aa|up_4|NZ_CP015152.1_10038_10758_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|640aa|up_3|NZ_CP015152.1_10758_12678_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|287aa|up_2|NZ_CP015152.1_12680_13541_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|55aa|up_1|NZ_CP015152.1_13831_13996_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|78aa|up_0|NZ_CP015152.1_14047_14281_+	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas7|52aa|down_0|NZ_CP015152.1_15645_15801_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|142aa|down_1|NZ_CP015152.1_16740_17166_+	NA	NA|364aa|down_2|NZ_CP015152.1_17429_18521_+	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	NA|76aa|down_3|NZ_CP015152.1_18536_18764_+	NA	RT|622aa|down_4|NZ_CP015152.1_20490_22356_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|988aa|down_5|NZ_CP015152.1_22983_25947_-	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	NA|285aa|down_6|NZ_CP015152.1_25965_26820_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|95aa|down_7|NZ_CP015152.1_26889_27174_-	NA	NA|83aa|down_8|NZ_CP015152.1_27310_27559_-	NA	NA|365aa|down_9|NZ_CP015152.1_27903_28998_+	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal
GCF_001618665.1_ASM161866v1	NZ_CP015150	Bacillus thuringiensis strain Bc601, complete genome	1	3826888-3827320	1	CRT	no		cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4	Orphan	TAACACGGGCGCTACTGG	18	0	0	NA	NA	NA	10	10	Orphan	cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4,cas5,cas8c,cas7	NA,NA|82aa|down_2|NZ_CP015150.1_3830017_3830263_+,NA|106aa|down_9|NZ_CP015150.1_3837454_3837772_-	NA|268aa|up_9|NZ_CP015150.1_3816486_3817290_-	pfam13349, DUF4097, Putative adhesin	NA|181aa|up_8|NZ_CP015150.1_3817290_3817833_-	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|108aa|up_7|NZ_CP015150.1_3817825_3818149_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|445aa|up_6|NZ_CP015150.1_3818767_3820102_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|130aa|up_5|NZ_CP015150.1_3820150_3820540_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|424aa|up_4|NZ_CP015150.1_3820724_3821996_-	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|425aa|up_3|NZ_CP015150.1_3821988_3823263_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|208aa|up_2|NZ_CP015150.1_3823355_3823979_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|319aa|up_1|NZ_CP015150.1_3824247_3825204_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|322aa|up_0|NZ_CP015150.1_3825317_3826283_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|75aa|down_0|NZ_CP015150.1_3828637_3828862_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|318aa|down_1|NZ_CP015150.1_3828883_3829837_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|82aa|down_2|NZ_CP015150.1_3830017_3830263_+	NA	NA|317aa|down_3|NZ_CP015150.1_3830325_3831276_-	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|619aa|down_4|NZ_CP015150.1_3831625_3833482_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|304aa|down_5|NZ_CP015150.1_3833495_3834407_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|270aa|down_6|NZ_CP015150.1_3834403_3835213_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|388aa|down_7|NZ_CP015150.1_3835314_3836478_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|181aa|down_8|NZ_CP015150.1_3836594_3837137_-	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|106aa|down_9|NZ_CP015150.1_3837454_3837772_-	NA
GCF_001618665.1_ASM161866v1	NZ_CP015150	Bacillus thuringiensis strain Bc601, complete genome	2	3827402-3828148	2	CRT	no		cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4	Orphan	NGCTACNGGNGCNACTGG	18	7	7	3827420-3827446|3827465-3827500|3827519-3827545|3827564-3827590|3827717-3827743|3827762-3827779|3827906-3827941	NZ_CP015150.1_3827375-3827401|NZ_CP015150.1_3827375-3827410|NZ_CP015150.1_3827375-3827401|NZ_CP015150.1_3827375-3827401|NZ_CP015150.1_3827375-3827401|NZ_CP015150.1_3827384-3827401|NZ_CP015150.1_3827375-3827410	NA	14	14	Orphan	cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4,cas5,cas8c,cas7	NA,NA|82aa|down_2|NZ_CP015150.1_3830017_3830263_+,NA|106aa|down_9|NZ_CP015150.1_3837454_3837772_-	NA|268aa|up_9|NZ_CP015150.1_3816486_3817290_-	pfam13349, DUF4097, Putative adhesin	NA|181aa|up_8|NZ_CP015150.1_3817290_3817833_-	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|108aa|up_7|NZ_CP015150.1_3817825_3818149_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|445aa|up_6|NZ_CP015150.1_3818767_3820102_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|130aa|up_5|NZ_CP015150.1_3820150_3820540_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|424aa|up_4|NZ_CP015150.1_3820724_3821996_-	pfam06838, Met_gamma_lyase, Methionine gamma-lyase	NA|425aa|up_3|NZ_CP015150.1_3821988_3823263_-	TIGR03156, GTP_HflX, GTP-binding protein HflX	NA|208aa|up_2|NZ_CP015150.1_3823355_3823979_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|319aa|up_1|NZ_CP015150.1_3824247_3825204_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|322aa|up_0|NZ_CP015150.1_3825317_3826283_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|75aa|down_0|NZ_CP015150.1_3828637_3828862_-	PRK00395, hfq, RNA-binding protein Hfq; Provisional	NA|318aa|down_1|NZ_CP015150.1_3828883_3829837_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|82aa|down_2|NZ_CP015150.1_3830017_3830263_+	NA	NA|317aa|down_3|NZ_CP015150.1_3830325_3831276_-	COG3584, COG3584, Uncharacterized protein conserved in bacteria [Function unknown]	NA|619aa|down_4|NZ_CP015150.1_3831625_3833482_-	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|304aa|down_5|NZ_CP015150.1_3833495_3834407_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|270aa|down_6|NZ_CP015150.1_3834403_3835213_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|388aa|down_7|NZ_CP015150.1_3835314_3836478_-	cd08187, BDH, Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process	NA|181aa|down_8|NZ_CP015150.1_3836594_3837137_-	COG2322, COG2322, Predicted membrane protein [Function unknown]	NA|106aa|down_9|NZ_CP015150.1_3837454_3837772_-	NA
GCF_001618665.1_ASM161866v1	NZ_CP015150	Bacillus thuringiensis strain Bc601, complete genome	3	5319974-5320124	1	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4	Orphan	TTATATCAGCGATTTTCAAAATATATCGGCG	31	1	2	5320065-5320093|5320065-5320093	NZ_CP015150.1_5320105-5320133|NZ_CP015150.1_4744270-4744242	NA	2	2	Orphan	cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4,cas5,cas8c,cas7	NA,NA	NA|471aa|up_9|NZ_CP015150.1_5307090_5308503_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|105aa|up_8|NZ_CP015150.1_5308651_5308966_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|281aa|up_7|NZ_CP015150.1_5309138_5309981_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|212aa|up_6|NZ_CP015150.1_5310217_5310853_+	TIGR00257, IMPACT_family_member_HI_0722, uncharacterized protein, YigZ family	NA|375aa|up_5|NZ_CP015150.1_5310935_5312060_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|372aa|up_4|NZ_CP015150.1_5312097_5313213_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|442aa|up_3|NZ_CP015150.1_5313287_5314613_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|358aa|up_2|NZ_CP015150.1_5315145_5316219_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|246aa|up_1|NZ_CP015150.1_5316418_5317156_+	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|892aa|up_0|NZ_CP015150.1_5317260_5319936_+	COG3933, COG3933, Transcriptional antiterminator [Transcription]	NA|138aa|down_0|NZ_CP015150.1_5320240_5320654_-	smart00754, CHRD, A domain in the BMP inhibitor chordin and in microbial proteins	NA|394aa|down_1|NZ_CP015150.1_5320841_5322023_+	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family	NA|235aa|down_2|NZ_CP015150.1_5322061_5322766_-	PRK02134, PRK02134, chitin disaccharide deacetylase	NA|442aa|down_3|NZ_CP015150.1_5322815_5324141_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|108aa|down_4|NZ_CP015150.1_5324144_5324468_-	cd00215, PTS_IIA_lac, PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit	NA|436aa|down_5|NZ_CP015150.1_5324649_5325957_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|101aa|down_6|NZ_CP015150.1_5325973_5326276_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|106aa|down_7|NZ_CP015150.1_5326622_5326940_-	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|434aa|down_8|NZ_CP015150.1_5326949_5328251_-	TIGR00359, NN'-diacetylchitobiose_permease_IIC_component, phosphotransferase system, cellobiose specific, IIC component	NA|101aa|down_9|NZ_CP015150.1_5328265_5328568_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)
GCF_001618665.1_ASM161866v1	NZ_CP015150	Bacillus thuringiensis strain Bc601, complete genome	4	5402052-5402185	2	CRISPRCasFinder	no		cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4	Orphan	GTTGATTTCTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,WYL,DinG,cas14j,cas14k,DEDDh,c2c9_V-U4,cas5,cas8c,cas7	NA|45aa|up_0|NZ_CP015150.1_5401729_5401864_-,NA	NA|220aa|up_9|NZ_CP015150.1_5393723_5394383_-	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|293aa|up_8|NZ_CP015150.1_5394403_5395282_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NZ_CP015150.1_5395527_5396295_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|234aa|up_6|NZ_CP015150.1_5396406_5397108_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|up_5|NZ_CP015150.1_5397097_5397841_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|226aa|up_4|NZ_CP015150.1_5398103_5398781_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|145aa|up_3|NZ_CP015150.1_5399125_5399560_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|334aa|up_2|NZ_CP015150.1_5399986_5400988_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|91aa|up_1|NZ_CP015150.1_5401148_5401421_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NZ_CP015150.1_5401729_5401864_-	NA	NA|235aa|down_0|NZ_CP015150.1_5403073_5403778_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|281aa|down_1|NZ_CP015150.1_5403777_5404620_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NZ_CP015150.1_5404800_5405808_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|340aa|down_3|NZ_CP015150.1_5405907_5406927_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_4|NZ_CP015150.1_5407133_5408438_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_5|NZ_CP015150.1_5408477_5409188_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_6|NZ_CP015150.1_5409233_5409470_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_7|NZ_CP015150.1_5409672_5411193_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_8|NZ_CP015150.1_5411194_5412697_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|down_9|NZ_CP015150.1_5412693_5414556_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
