assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001620025.1_ASM162002v1	NZ_CP015219	Rhodococcus sp. PBTS 1 chromosome, complete genome	1	35134-35243	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas4,cas3,csa3	Orphan	CACCCGCGCGGGTTCTGGTCACCTGCACGGGTTGCAACCG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas4,cas3,csa3	NA,NA|475aa|down_5|NZ_CP015219.1_42525_43950_+,NA|95aa|down_6|NZ_CP015219.1_43953_44238_+	NA|550aa|up_9|NZ_CP015219.1_25137_26787_+	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|245aa|up_8|NZ_CP015219.1_26811_27546_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|138aa|up_7|NZ_CP015219.1_27508_27922_-	pfam11255, DUF3054, Protein of unknown function (DUF3054)	NA|184aa|up_6|NZ_CP015219.1_28000_28552_-	pfam04264, YceI, YceI-like domain	NA|365aa|up_5|NZ_CP015219.1_28625_29720_-	COG0392, COG0392, Predicted integral membrane protein [Function unknown]	NA|488aa|up_4|NZ_CP015219.1_29778_31242_-	cd07302, CHD, cyclase homology domain	NA|406aa|up_3|NZ_CP015219.1_31400_32618_+	pfam01594, AI-2E_transport, AI-2E family transporter	NA|381aa|up_2|NZ_CP015219.1_32589_33732_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|221aa|up_1|NZ_CP015219.1_33704_34367_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|up_0|NZ_CP015219.1_34426_35041_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|611aa|down_0|NZ_CP015219.1_35349_37182_+	pfam10101, DUF2339, Predicted membrane protein (DUF2339)	NA|1033aa|down_1|NZ_CP015219.1_37141_40240_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|234aa|down_2|NZ_CP015219.1_40240_40942_-	pfam01936, NYN, NYN domain	NA|251aa|down_3|NZ_CP015219.1_41003_41756_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|187aa|down_4|NZ_CP015219.1_41968_42529_+	cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain	NA|475aa|down_5|NZ_CP015219.1_42525_43950_+	NA	NA|95aa|down_6|NZ_CP015219.1_43953_44238_+	NA	NA|610aa|down_7|NZ_CP015219.1_44448_46278_+	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|322aa|down_8|NZ_CP015219.1_46449_47415_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|307aa|down_9|NZ_CP015219.1_47432_48353_-	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_001620025.1_ASM162002v1	NZ_CP015219	Rhodococcus sp. PBTS 1 chromosome, complete genome	2	530354-530446	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas4,cas3,csa3	Orphan	CGTTCGCTCCGCTCACGCCCAGT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas4,cas3,csa3	NA|162aa|up_9|NZ_CP015219.1_523866_524352_-,NA	NA|162aa|up_9|NZ_CP015219.1_523866_524352_-	NA	NA|133aa|up_8|NZ_CP015219.1_524790_525189_+	PRK00136, rpsH, 30S ribosomal protein S8; Validated	NA|180aa|up_7|NZ_CP015219.1_525203_525743_+	PRK05498, rplF, 50S ribosomal protein L6; Validated	NA|141aa|up_6|NZ_CP015219.1_525742_526165_+	PRK05593, rplR, 50S ribosomal protein L18; Reviewed	NA|222aa|up_5|NZ_CP015219.1_526211_526877_+	PRK00550, rpsE, 30S ribosomal protein S5; Validated	NA|60aa|up_4|NZ_CP015219.1_526869_527049_+	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed	NA|148aa|up_3|NZ_CP015219.1_527051_527495_+	PRK05592, rplO, 50S ribosomal protein L15; Reviewed	NA|441aa|up_2|NZ_CP015219.1_527669_528992_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|186aa|up_1|NZ_CP015219.1_528988_529546_+	PRK00279, adk, adenylate kinase; Reviewed	NA|265aa|up_0|NZ_CP015219.1_529549_530344_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|263aa|down_0|NZ_CP015219.1_531476_532265_-	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|269aa|down_1|NZ_CP015219.1_532329_533136_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|278aa|down_2|NZ_CP015219.1_533120_533954_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|721aa|down_3|NZ_CP015219.1_533991_536154_-	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|159aa|down_4|NZ_CP015219.1_536345_536822_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|648aa|down_5|NZ_CP015219.1_536941_538885_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|595aa|down_6|NZ_CP015219.1_539001_540786_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|431aa|down_7|NZ_CP015219.1_540807_542100_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|208aa|down_8|NZ_CP015219.1_542153_542777_+	TIGR03384, betaine_BetI, transcriptional repressor BetI	NA|381aa|down_9|NZ_CP015219.1_542773_543916_+	cd06813, PLPDE_III_DSD_D-TA_like_2, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2
GCF_001620025.1_ASM162002v1	NZ_CP015219	Rhodococcus sp. PBTS 1 chromosome, complete genome	3	2165343-2165468	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas4,cas3,csa3	Orphan	TGCAGCTGCGGCGGATCGCTGGAACCGGCGCGGATC	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas4,cas3,csa3	NA|71aa|up_8|NZ_CP015219.1_2153032_2153245_+,NA	NA|471aa|up_9|NZ_CP015219.1_2151558_2152971_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|71aa|up_8|NZ_CP015219.1_2153032_2153245_+	NA	NA|577aa|up_7|NZ_CP015219.1_2153314_2155045_+	cd00887, MoeA, MoeA family	NA|253aa|up_6|NZ_CP015219.1_2154986_2155745_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|393aa|up_5|NZ_CP015219.1_2155741_2156920_-	PRK07239, PRK07239, bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated	NA|134aa|up_4|NZ_CP015219.1_2156946_2157348_-	pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain	NA|832aa|up_3|NZ_CP015219.1_2157449_2159945_-	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional	NA|531aa|up_2|NZ_CP015219.1_2159941_2161534_-	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|713aa|up_1|NZ_CP015219.1_2161530_2163669_-	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	NA|466aa|up_0|NZ_CP015219.1_2163665_2165063_-	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	NA|410aa|down_0|NZ_CP015219.1_2165752_2166982_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|221aa|down_1|NZ_CP015219.1_2167111_2167774_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|425aa|down_2|NZ_CP015219.1_2168136_2169411_+	TIGR03407, urea_ABC_UrtA, urea ABC transporter, urea binding protein	NA|295aa|down_3|NZ_CP015219.1_2169458_2170343_+	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB	NA|390aa|down_4|NZ_CP015219.1_2170339_2171509_+	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC	NA|303aa|down_5|NZ_CP015219.1_2171505_2172414_+	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD	NA|231aa|down_6|NZ_CP015219.1_2172397_2173090_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|238aa|down_7|NZ_CP015219.1_2173089_2173803_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|1240aa|down_8|NZ_CP015219.1_2173860_2177580_+	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|573aa|down_9|NZ_CP015219.1_2177576_2179295_+	PRK08186, PRK08186, allophanate hydrolase; Provisional
GCF_001620025.1_ASM162002v1	NZ_CP015219	Rhodococcus sp. PBTS 1 chromosome, complete genome	4	3053834-3053917	4	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas4,cas3,csa3	Orphan	CCGACCTCGGCCGAGTCGGTCGCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas4,cas3,csa3	NA,NA	NA|425aa|up_9|NZ_CP015219.1_3042573_3043848_-	PRK02813, PRK02813, putative aminopeptidase 2; Provisional	NA|431aa|up_8|NZ_CP015219.1_3044463_3045756_+	cd11354, AmyAc_bac_CMD_like, Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins	NA|230aa|up_7|NZ_CP015219.1_3045757_3046447_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|78aa|up_6|NZ_CP015219.1_3046443_3046677_-	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed	NA|215aa|up_5|NZ_CP015219.1_3046785_3047430_+	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|548aa|up_4|NZ_CP015219.1_3047426_3049070_-	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed	NA|199aa|up_3|NZ_CP015219.1_3049088_3049685_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|523aa|up_2|NZ_CP015219.1_3049749_3051318_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|246aa|up_1|NZ_CP015219.1_3051377_3052115_-	COG3233, COG3233, Predicted deacetylase [General function prediction only]	NA|167aa|up_0|NZ_CP015219.1_3052199_3052700_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|462aa|down_0|NZ_CP015219.1_3054912_3056298_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|525aa|down_1|NZ_CP015219.1_3056456_3058031_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|229aa|down_2|NZ_CP015219.1_3058042_3058729_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|297aa|down_3|NZ_CP015219.1_3058725_3059616_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|713aa|down_4|NZ_CP015219.1_3059650_3061789_-	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|295aa|down_5|NZ_CP015219.1_3061794_3062679_-	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|451aa|down_6|NZ_CP015219.1_3062812_3064165_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|305aa|down_7|NZ_CP015219.1_3064181_3065096_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|577aa|down_8|NZ_CP015219.1_3065210_3066941_-	pfam13196, DUF4012, Protein of unknown function (DUF4012)	NA|442aa|down_9|NZ_CP015219.1_3067006_3068332_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
GCF_001620025.1_ASM162002v1	NZ_CP015219	Rhodococcus sp. PBTS 1 chromosome, complete genome	5	3784953-3785098	5	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas4,cas3,csa3	Orphan	CGAACTTGCTCCGGTTCTTGCAACTTGCTCCTGCTGTAACCGAAGCAAGTTGCGG	55	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas4,cas3,csa3	NA|63aa|up_5|NZ_CP015219.1_3779033_3779222_-,NA|164aa|up_0|NZ_CP015219.1_3784026_3784518_-,NA|49aa|down_1|NZ_CP015219.1_3786785_3786932_-,NA|180aa|down_3|NZ_CP015219.1_3787927_3788467_+	NA|383aa|up_9|NZ_CP015219.1_3773609_3774758_+	pfam03583, LIP, Secretory lipase	NA|717aa|up_8|NZ_CP015219.1_3774836_3776987_-	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|404aa|up_7|NZ_CP015219.1_3777001_3778213_-	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|226aa|up_6|NZ_CP015219.1_3778359_3779037_-	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|63aa|up_5|NZ_CP015219.1_3779033_3779222_-	NA	NA|419aa|up_4|NZ_CP015219.1_3779220_3780477_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|212aa|up_3|NZ_CP015219.1_3780473_3781109_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|754aa|up_2|NZ_CP015219.1_3781105_3783367_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|195aa|up_1|NZ_CP015219.1_3783405_3783990_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|164aa|up_0|NZ_CP015219.1_3784026_3784518_-	NA	NA|427aa|down_0|NZ_CP015219.1_3785148_3786429_-	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase	NA|49aa|down_1|NZ_CP015219.1_3786785_3786932_-	NA	NA|307aa|down_2|NZ_CP015219.1_3786978_3787899_-	pfam10977, DUF2797, Protein of unknown function (DUF2797)	NA|180aa|down_3|NZ_CP015219.1_3787927_3788467_+	NA	NA|293aa|down_4|NZ_CP015219.1_3788654_3789533_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|460aa|down_5|NZ_CP015219.1_3789599_3790979_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|550aa|down_6|NZ_CP015219.1_3791310_3792960_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|282aa|down_7|NZ_CP015219.1_3793058_3793904_+	COG5473, COG5473, Predicted integral membrane protein [Function unknown]	NA|246aa|down_8|NZ_CP015219.1_3793986_3794724_+	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|409aa|down_9|NZ_CP015219.1_3794775_3796002_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional
