The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	36868	49182	1860554		Synechococcus_phage(28.57%)	8	NA	NA
WP_014635214.1|36868_40594_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.0	1.6e-40
WP_014635215.1|40754_42209_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.5	1.4e-53
WP_014635216.1|42236_43259_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	1.2e-62
WP_002986700.1|43426_43981_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	2.4e-25
WP_014635217.1|44164_45712_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	53.2	4.4e-45
WP_002987712.1|45770_46895_-	SH3 domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
WP_014635218.1|47147_48413_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_002987716.1|48690_49182_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.3	3.2e-18
>prophage 2
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	332312	430924	1860554	tRNA,bacteriocin,transposase,protease	Streptococcus_phage(20.0%)	98	NA	NA
WP_002985850.1|332312_332903_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	55.7	2.6e-54
WP_002985847.1|333397_333673_+	YlbG family protein	NA	NA	NA	NA	NA
WP_014635306.1|333920_334556_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.0e-65
WP_011528291.1|334573_335449_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	47.9	1.8e-72
WP_002985838.1|336111_336435_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
WP_014635308.1|336439_337303_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
WP_002985833.1|337329_337722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054223.1|337768_338398_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_002995120.1|338695_339052_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	66.7	2.8e-40
WP_014635309.1|339125_339953_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.5	4.2e-127
WP_012560476.1|340186_341368_+	L-lactate oxidase	NA	NA	NA	NA	NA
WP_014635310.1|341632_346579_+|protease	CXC chemokine-degrading serine protease SpyCEP	protease	NA	NA	NA	NA
WP_011284541.1|347355_348063_+	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_080007598.1|348302_350303_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	35.0	5.1e-86
WP_011284544.1|350793_351807_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	52.7	1.6e-96
WP_014635313.1|351810_352299_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	R4JF54	Bacillus_phage	37.5	1.3e-11
WP_011054229.1|352265_354446_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.2	1.2e-170
WP_014635314.1|354650_355403_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
WP_000564846.1|355665_356799_-|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
WP_014635315.1|357176_357770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014635317.1|359664_360138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014635318.1|360832_361084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014635319.1|361176_361677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002990844.1|362026_362263_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
WP_014635320.1|362255_362954_+	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	9.3e-11
WP_014635321.1|363029_363989_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_014635322.1|364321_365659_+	MFS transporter	NA	NA	NA	NA	NA
WP_014635323.1|365832_367215_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L4K9	Tupanvirus	36.0	6.5e-32
WP_014635324.1|367245_367800_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_002990826.1|367799_368051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010921957.1|368070_368766_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_011184241.1|368916_369258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014635325.1|369356_370004_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_011017446.1|370149_371082_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014635326.1|371145_371871_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.1e-17
WP_011017448.1|371871_372726_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002990808.1|372873_373680_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
WP_014635327.1|373896_376302_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	3.8e-88
WP_010921962.1|376371_376725_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
WP_002990800.1|376968_377394_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_002985768.1|377499_378189_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_002985765.1|378511_379240_+	UMP kinase	NA	NA	NA	NA	NA
WP_014635328.1|379268_379826_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_014635329.1|379934_380792_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002985759.1|380864_381374_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002985757.1|381370_381586_+	YozE family protein	NA	NA	NA	NA	NA
WP_011528331.1|381741_382923_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.6e-16
WP_014635330.1|383238_385011_+	oleate hydratase	NA	NA	NA	NA	NA
WP_010921967.1|385169_386222_+	PhoH family protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
WP_011284574.1|386267_386843_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_002985748.1|387001_387499_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_002985746.1|387479_387887_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_014635331.1|388006_388903_+	GTPase Era	NA	NA	NA	NA	NA
WP_014635332.1|388922_389399_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_014635333.1|390559_391006_-	ATP-binding cassette domain-containing protein	NA	F2Y302	Organic_Lake_phycodnavirus	36.0	4.1e-12
WP_011528336.1|391228_391939_-|bacteriocin	bacteriocin ABC transporter	bacteriocin	NA	NA	NA	NA
WP_002994577.1|392043_392280_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_002994580.1|392577_392802_+|bacteriocin	Blp family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002994581.1|392779_392956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072135613.1|393199_393562_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_028797129.1|394172_394400_+|bacteriocin	Blp family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002994587.1|394448_394766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020833317.1|394831_395113_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_115359493.1|395061_395715_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	38.5	1.1e-26
WP_080464589.1|395754_395970_+|transposase	transposase	transposase	U5P429	Shigella_phage	43.9	2.7e-09
WP_002992578.1|397911_398661_+	response regulator transcription factor	NA	A0A1V0E029	Clostridioides_phage	28.0	2.1e-21
WP_014635339.1|398661_399996_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_011017462.1|400143_400269_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_014635340.1|400345_401710_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_014635341.1|401720_403874_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.3	5.7e-43
WP_012560514.1|404161_404389_+|bacteriocin	Blp family class II bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003060803.1|404401_404602_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_011054252.1|405140_405422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023605036.1|405615_406017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014635342.1|407431_407830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023605037.1|408177_408447_-	quorum-sensing system protein StcA	NA	NA	NA	NA	NA
WP_128650799.1|409360_409429_-	peptide pheromone SHP2	NA	NA	NA	NA	NA
WP_002990747.1|409517_410384_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002994138.1|410555_411383_+	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	27.5	1.1e-15
WP_002994141.1|411379_411973_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_011284584.1|412162_413665_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	41.2	6.7e-75
WP_002994146.1|413786_414980_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002990729.1|414976_415123_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002985700.1|415168_415405_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_023079853.1|415498_417832_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	5.2e-90
WP_002994152.1|417834_418302_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
WP_010921981.1|418307_419027_+	glutaminyl-peptide cyclotransferase	NA	NA	NA	NA	NA
WP_002994169.1|419143_419791_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
WP_002985692.1|419840_420767_-	DUF979 domain-containing protein	NA	NA	NA	NA	NA
WP_014635345.1|420766_421450_-	DUF969 domain-containing protein	NA	NA	NA	NA	NA
WP_002994177.1|421660_422587_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	47.5	2.6e-77
WP_002985686.1|422731_423109_-	VOC family protein	NA	NA	NA	NA	NA
WP_002985684.1|423119_423785_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011054264.1|423833_424919_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_002985680.1|425092_426094_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
WP_002994184.1|426224_427223_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002994187.1|427224_428559_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_002985672.1|428980_430924_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	38.7	1.0e-120
>prophage 3
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	559278	652254	1860554	protease,portal,holin,terminase,capsid,integrase,tRNA,tail	Streptococcus_phage(70.31%)	103	559922:559937	655024:655039
WP_011054325.1|559278_559950_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
559922:559937	attL	AAACAAAAAAGAAGAA	NA	NA	NA	NA
WP_002985270.1|559946_560630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002990429.1|560652_561576_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	38.1	6.7e-33
WP_002985266.1|561584_562712_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002985264.1|562708_563827_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014635379.1|564398_567131_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_002985256.1|567408_567909_+	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	31.8	5.4e-05
WP_014635380.1|568102_570061_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	34.9	1.3e-102
WP_002985252.1|570074_571097_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	27.9	3.6e-19
WP_002985249.1|571489_571687_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003050130.1|571721_572438_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_010922117.1|572455_572950_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_002990418.1|572949_573486_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_002985238.1|573501_575010_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_002985236.1|575025_575901_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_014635381.1|576062_577469_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_002994425.1|577481_577898_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_011184362.1|578163_578421_+	DUF1146 domain-containing protein	NA	NA	NA	NA	NA
WP_002994428.1|578485_579757_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002985226.1|579760_579949_+	DNA-directed RNA polymerase subunit beta	NA	NA	NA	NA	NA
WP_003057440.1|581130_582174_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.3	4.6e-30
WP_063265935.1|582383_584789_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_002993028.1|584900_585278_+	OsmC family protein	NA	NA	NA	NA	NA
WP_011528464.1|585270_585657_+	YbgA family protein	NA	NA	NA	NA	NA
WP_010922123.1|585729_586806_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011285473.1|586815_587484_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	2.2e-30
WP_014635385.1|587585_588512_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	37.0	1.3e-33
WP_014635386.1|588662_591878_+	ATP-dependent nuclease subunit B	NA	NA	NA	NA	NA
WP_014635387.1|591838_595507_+	helicase-exonuclease AddAB subunit AddA	NA	G3MA40	Bacillus_virus	25.3	1.6e-21
WP_014635388.1|595646_596459_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000048058.1|596599_596776_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_014635389.1|596903_597266_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_014635390.1|597422_599210_+	DNA primase	NA	A0A1S5RF71	Helicobacter_phage	28.6	3.4e-41
WP_002985187.1|599218_600328_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	35.1	2.0e-36
WP_002990295.1|600563_600902_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_002992705.1|601039_601894_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.3	6.8e-32
WP_002985181.1|602012_603167_+	DUF1972 domain-containing protein	NA	NA	NA	NA	NA
WP_002992707.1|603156_604089_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002985178.1|604091_604895_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002985176.1|604894_606100_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	6.5e-12
WP_014635391.1|606124_607132_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002985173.1|607128_608874_+	alpha-L-Rha alpha-1,3-L-rhamnosyltransferase	NA	NA	NA	NA	NA
WP_029714017.1|609611_609794_-	hypothetical protein	NA	A3F673	Streptococcus_phage	71.7	1.0e-17
WP_048327315.1|609992_610202_-	helix-turn-helix transcriptional regulator	NA	A3F668	Streptococcus_phage	98.6	7.7e-30
WP_164406938.1|610355_610502_+	hypothetical protein	NA	A3F667	Streptococcus_phage	100.0	2.3e-17
WP_048327312.1|610642_610894_+	hypothetical protein	NA	A3F666	Streptococcus_phage	96.4	1.6e-42
WP_011054447.1|611157_611397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054446.1|611454_611811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054445.1|611926_613135_-	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	87.5	2.9e-214
WP_011054444.1|613250_613478_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	98.7	7.6e-31
WP_011017397.1|613474_613747_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
WP_011054443.1|613758_614391_-	hypothetical protein	NA	Q938J7	Temperate_phage	49.5	2.0e-44
WP_063265937.1|614393_614822_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	83.6	2.3e-57
WP_011017395.1|614833_616738_-	gp58-like family protein	NA	Q938J9	Temperate_phage	83.7	1.1e-210
WP_011017394.1|616747_617755_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	64.9	9.9e-115
WP_063265938.1|617751_619803_-|tail	phage tail protein	tail	A3F656	Streptococcus_phage	85.2	0.0e+00
WP_011017392.1|619799_620570_-|tail	phage tail family protein	tail	A3F655	Streptococcus_phage	87.5	2.1e-128
WP_063265939.1|620582_624683_-|tail	phage tail tape measure protein	tail	A3F654	Streptococcus_phage	66.8	0.0e+00
WP_011017390.1|624908_625211_-	hypothetical protein	NA	A3F652	Streptococcus_phage	96.0	1.8e-48
WP_011017389.1|625303_625888_-|tail	tail protein	tail	A3F651	Streptococcus_phage	90.2	3.1e-92
WP_011017388.1|625899_626280_-	hypothetical protein	NA	A3F650	Streptococcus_phage	99.2	7.4e-63
WP_011017387.1|626272_626671_-	HK97 gp10 family phage protein	NA	A3F649	Streptococcus_phage	100.0	2.9e-70
WP_011017386.1|626672_627035_-	hypothetical protein	NA	A3F648	Streptococcus_phage	97.5	1.1e-60
WP_011017385.1|627027_627336_-	hypothetical protein	NA	A3F647	Streptococcus_phage	99.0	1.2e-47
WP_011017384.1|627335_627509_-	hypothetical protein	NA	A3F646	Streptococcus_phage	94.7	6.4e-22
WP_011017383.1|627522_628656_-|capsid	phage major capsid protein	capsid	A3F645	Streptococcus_phage	96.8	3.2e-202
WP_011017382.1|628672_629479_-|protease	Clp protease ClpP	protease	A3F644	Streptococcus_phage	98.1	4.6e-147
WP_011017381.1|629459_630647_-|portal	phage portal protein	portal	A3F643	Streptococcus_phage	96.2	5.6e-218
WP_032461344.1|630799_631024_-	hypothetical protein	NA	A3F642	Streptococcus_phage	97.3	2.0e-36
WP_011017380.1|631014_632745_-|terminase	terminase large subunit	terminase	A3F641	Streptococcus_phage	97.0	0.0e+00
WP_011017379.1|632757_633075_-|terminase	P27 family phage terminase small subunit	terminase	A3F640	Streptococcus_phage	99.0	3.9e-49
WP_063265940.1|633215_633521_-	HNH endonuclease	NA	A3F639	Streptococcus_phage	95.0	1.1e-53
WP_011017377.1|633513_633900_-	hypothetical protein	NA	A3F638	Streptococcus_phage	93.0	1.4e-64
WP_011017376.1|633925_634129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017375.1|634186_634480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054435.1|634633_635209_-|integrase	site-specific integrase	integrase	A3F636	Streptococcus_phage	99.5	7.4e-107
WP_011017373.1|635368_635770_-	hypothetical protein	NA	A3F635	Streptococcus_phage	100.0	2.7e-71
WP_011017372.1|635784_636612_-	prohibitin family protein	NA	A3F634	Streptococcus_phage	100.0	1.3e-117
WP_011017371.1|636614_636953_-	helix-turn-helix transcriptional regulator	NA	A3F633	Streptococcus_phage	92.9	1.1e-54
WP_011054431.1|636949_637231_-	hypothetical protein	NA	A3F632	Streptococcus_phage	92.2	4.5e-33
WP_011017370.1|637245_637638_-	single-stranded DNA-binding protein	NA	A0A1P8VVS8	Streptococcus_phage	70.3	6.9e-48
WP_011017369.1|637634_637856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017368.1|637852_638338_-	DUF1642 domain-containing protein	NA	A0A1S5S9L5	Streptococcus_phage	41.4	5.6e-23
WP_023611652.1|638342_638975_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	65.7	5.9e-81
WP_011017366.1|638976_639246_-	hypothetical protein	NA	A7J287	Streptococcus_phage	80.9	1.4e-28
WP_023611649.1|639242_639413_-	hypothetical protein	NA	Q938M0	Temperate_phage	55.4	2.7e-09
WP_011017365.1|639409_639853_-	hypothetical protein	NA	A0A1C9LX52	Streptococcus_phage	55.0	1.6e-32
WP_032467212.1|640008_640236_-	hypothetical protein	NA	C5J991	Streptococcus_phage	49.3	9.3e-13
WP_063265941.1|640235_641048_-	ATP-binding protein	NA	A0A1P8VVV9	Streptococcus_phage	77.6	5.2e-122
WP_011017361.1|641047_641809_-	conserved phage C-terminal domain-containing protein	NA	A0A220GFI5	Streptococcus_phage	56.1	9.1e-28
WP_011106800.1|641801_643157_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	84.7	9.3e-209
WP_032461348.1|643128_643317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017359.1|643437_643629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054421.1|643721_643979_-	hypothetical protein	NA	A3F618	Streptococcus_phage	98.8	5.4e-41
WP_011017357.1|644052_644772_-	ORF6C domain-containing protein	NA	A3F617	Streptococcus_phage	78.7	4.6e-106
WP_032464978.1|644823_645324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011054420.1|645651_645864_-	helix-turn-helix transcriptional regulator	NA	M1Q1B4	Streptococcus_phage	52.9	1.7e-13
WP_011017354.1|645898_646174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011017353.1|646462_646813_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SAD3	Streptococcus_phage	63.5	1.2e-35
WP_011017352.1|646816_647209_+	hypothetical protein	NA	A3F612	Streptococcus_phage	68.7	2.2e-38
WP_011017351.1|647219_647960_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A3F611	Streptococcus_phage	100.0	1.6e-130
WP_011017350.1|648270_649467_+|integrase	site-specific integrase	integrase	A3F610	Streptococcus_phage	99.0	3.9e-227
WP_002985169.1|651558_652254_+	glycosyltransferase family 2 protein	NA	A0A0N7A8R9	Sulfolobus_monocaudavirus	28.2	8.3e-12
655024:655039	attR	TTCTTCTTTTTTGTTT	NA	NA	NA	NA
>prophage 4
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	660242	667642	1860554		Streptococcus_phage(66.67%)	6	NA	NA
WP_011054348.1|660242_662453_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
WP_002985142.1|662560_663724_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
WP_002985140.1|663720_664407_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
WP_014635396.1|664500_665667_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	5.8e-34
WP_002985134.1|665727_666069_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	5.9e-19
WP_014635397.1|666289_667642_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	23.8	2.3e-29
>prophage 5
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	970621	1049089	1860554	tRNA,protease,portal,terminase,head,capsid,integrase,holin,tail	Streptococcus_phage(59.68%)	91	1003988:1004047	1045628:1045723
WP_002989678.1|970621_971506_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_014635488.1|971621_972962_-	DUF2130 domain-containing protein	NA	NA	NA	NA	NA
WP_014635489.1|973067_974024_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_002993908.1|974034_974631_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_063265946.1|974722_977359_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_002989664.1|977373_978075_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	4.9e-36
WP_002984482.1|978192_978735_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002984480.1|978877_979519_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002994467.1|979681_980170_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002984476.1|980180_980381_-	CsbD family protein	NA	J7KJ36	Streptococcus_phage	50.0	1.8e-07
WP_063265947.1|980421_980961_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002984473.1|980973_981162_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_011106783.1|981172_981784_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002984469.1|981820_982069_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002989648.1|982431_984750_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.2	3.5e-131
WP_002992407.1|985279_986602_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_014635492.1|986721_987957_+	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
WP_014635493.1|988326_989100_-	CAMP factor pore-forming toxin Cfa	NA	NA	NA	NA	NA
WP_014635494.1|989469_990306_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002992415.1|990321_990951_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.5	9.8e-28
WP_002992417.1|990960_991602_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002989626.1|991708_992044_-	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_014635495.1|992239_994054_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.7	1.5e-97
WP_002984449.1|994229_994787_-	signal peptidase I	NA	NA	NA	NA	NA
WP_002984447.1|995004_996507_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_002984444.1|996569_997583_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_002984441.1|997662_1000773_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	29.8	1.4e-119
WP_002989617.1|1000957_1001329_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002992425.1|1001328_1002027_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.3	6.6e-09
WP_002984433.1|1002036_1002822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002989607.1|1002952_1003567_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	52.3	6.2e-51
1003988:1004047	attL	ACTCCCACCAGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTA	NA	NA	NA	NA
WP_011184577.1|1004125_1004347_-	hypothetical protein	NA	A3F673	Streptococcus_phage	83.1	9.0e-21
WP_011054727.1|1004692_1005268_-	hypothetical protein	NA	Q938J0	Temperate_phage	100.0	1.7e-111
WP_011054728.1|1005743_1006523_-	streptococcal pyrogenic exotoxin SpeK	NA	Q938J1	Temperate_phage	100.0	5.4e-145
WP_002994484.1|1008143_1008836_-	AP2 domain-containing protein	NA	A0A2H4J2S8	uncultured_Caudovirales_phage	34.2	1.5e-32
WP_063265948.1|1009068_1009626_-	glycoside hydrolase family 73 protein	NA	Q938J4	Temperate_phage	86.5	1.6e-93
WP_002988455.1|1009737_1010193_-|holin	phage holin family protein	holin	A0A0M4R3G6	Streptococcus_phage	81.5	5.2e-63
WP_011184581.1|1010208_1010814_-	DUF1366 domain-containing protein	NA	Q938J7	Temperate_phage	92.5	9.3e-84
WP_011184582.1|1010816_1011245_-	DUF1617 family protein	NA	A3F661	Streptococcus_phage	92.9	8.6e-68
WP_063265949.1|1011256_1013164_-	gp58-like family protein	NA	Q938J9	Temperate_phage	80.2	2.4e-202
WP_063265950.1|1013173_1014181_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	66.1	1.3e-117
WP_063265951.1|1014177_1016322_-|tail	phage tail protein	tail	Q938K1	Temperate_phage	97.8	0.0e+00
WP_011184586.1|1016318_1017026_-	hypothetical protein	NA	Q938K2	Temperate_phage	71.5	7.5e-93
WP_063265952.1|1017025_1020949_-|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	50.6	2.8e-258
WP_014411856.1|1020961_1021129_-	hypothetical protein	NA	J7KBS0	Streptococcus_phage	87.3	2.9e-19
WP_014411857.1|1021158_1021485_-	hypothetical protein	NA	J7KK85	Streptococcus_phage	73.1	6.0e-37
WP_023078109.1|1021537_1022146_-|tail	phage major tail protein	tail	J7KKC8	Streptococcus_phage	70.0	3.9e-74
WP_011184592.1|1022162_1022588_-	hypothetical protein	NA	J7KBZ9	Streptococcus_phage	84.4	2.5e-67
WP_011184593.1|1022584_1022962_-	HK97 gp10 family phage protein	NA	J7KDM3	Streptococcus_phage	76.8	6.7e-48
WP_011184594.1|1022958_1023306_-|head	phage head closure protein	head	J7KJ42	Streptococcus_phage	87.3	6.5e-50
WP_011184595.1|1023302_1023605_-|head,tail	phage head-tail connector protein	head,tail	J7KC36	Streptococcus_phage	87.8	2.2e-41
WP_063265953.1|1023749_1024934_-|capsid	phage major capsid protein	capsid	J7KJ82	Streptococcus_phage	75.3	5.7e-162
WP_011184598.1|1024959_1025625_-|protease	Clp protease ClpP	protease	M1Q115	Streptococcus_phage	77.2	5.0e-91
WP_011184599.1|1025602_1026823_-|portal	phage portal protein	portal	J7KDU3	Streptococcus_phage	81.9	2.0e-186
WP_002985363.1|1026856_1027081_-	hypothetical protein	NA	Q938K9	Temperate_phage	61.4	3.6e-17
WP_002985365.1|1027073_1027244_-	hypothetical protein	NA	J7KK43	Streptococcus_phage	62.5	2.3e-08
WP_063265954.1|1027240_1028995_-	amino acid transporter	NA	J7KKD1	Streptococcus_phage	96.4	0.0e+00
WP_011184601.1|1029009_1029477_-|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	98.1	1.1e-81
WP_021340284.1|1029648_1029990_-	HNH endonuclease	NA	J7KH36	Streptococcus_phage	90.7	2.5e-54
WP_010922071.1|1030293_1030728_-	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	95.8	4.5e-72
WP_011184603.1|1030963_1031149_-	hypothetical protein	NA	A0A097PBF0	Streptococcus_pyogenes_phage	98.4	2.1e-26
WP_021340166.1|1031173_1031401_-	hypothetical protein	NA	A3F630	Streptococcus_phage	76.0	1.9e-26
WP_012560962.1|1031404_1031890_-	class I SAM-dependent methyltransferase	NA	A0A097PAU8	Streptococcus_pyogenes_phage	99.4	3.6e-94
WP_011017570.1|1031893_1032178_-	hypothetical protein	NA	A3F628	Streptococcus_phage	79.8	4.6e-33
WP_021340162.1|1032174_1032588_-	hypothetical protein	NA	Q938M1	Temperate_phage	67.4	6.8e-38
WP_021340156.1|1032584_1032869_-	DUF3310 domain-containing protein	NA	Q938M3	Temperate_phage	98.9	1.7e-48
WP_063265955.1|1033110_1033467_-	hypothetical protein	NA	A0A1P8VVP9	Streptococcus_phage	98.3	5.5e-60
WP_021340154.1|1033837_1035208_-	virulence-associated protein E	NA	M1PKI6	Streptococcus_phage	57.6	9.0e-151
WP_027968867.1|1035204_1036002_-	bifunctional DNA primase/polymerase	NA	A0A141E0U3	Streptococcus_phage	62.2	1.1e-87
WP_021340159.1|1036018_1036555_-	DUF669 domain-containing protein	NA	A0A1S5SF71	Streptococcus_phage	54.5	2.0e-37
WP_021340168.1|1036574_1037345_-	AAA family ATPase	NA	B3GVY5	Streptococcus_phage	60.4	3.8e-82
WP_021340158.1|1037345_1038542_-	type III restriction enzyme, res subunit domain protein	NA	X2KU10	Streptococcus_phage	69.6	9.5e-165
WP_021340160.1|1038501_1038969_-	hypothetical protein	NA	X2KUD4	Streptococcus_phage	68.0	7.5e-57
WP_021340157.1|1038965_1039250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002984315.1|1039246_1039441_-	hypothetical protein	NA	J7KK69	Streptococcus_phage	54.2	3.9e-12
WP_002984312.1|1039440_1039770_-	hypothetical protein	NA	A1EAC2	Streptococcus_phage	41.6	2.7e-13
WP_080464590.1|1039850_1039988_-	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	95.6	8.3e-17
WP_011184605.1|1039984_1040281_-	hypothetical protein	NA	A0A097PAT8	Streptococcus_pyogenes_phage	96.9	1.2e-47
WP_011184606.1|1040357_1040534_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002992762.1|1040676_1040898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011184607.1|1040855_1041197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002984287.1|1041363_1041609_-	hypothetical protein	NA	A0A097PAP6	Streptococcus_pyogenes_phage	95.1	1.2e-34
WP_063265956.1|1041642_1041861_-	helix-turn-helix transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	94.2	5.8e-28
WP_011017887.1|1041958_1042642_+	DUF4145 domain-containing protein	NA	A0A1X9I5M7	Streptococcus_phage	59.4	1.2e-71
WP_011184610.1|1042768_1042927_-	hypothetical protein	NA	J7KH24	Streptococcus_phage	92.3	1.7e-21
WP_021340161.1|1042985_1043153_+	hypothetical protein	NA	J7KBX0	Streptococcus_phage	91.1	9.5e-15
WP_011184611.1|1043273_1044062_+	phage repressor protein	NA	A0A1S5SD15	Streptococcus_phage	63.0	3.4e-86
WP_011106738.1|1044071_1044377_+	membrane protein	NA	NA	NA	NA	NA
WP_011017891.1|1044496_1045585_+|integrase	site-specific integrase	integrase	Q38159	Streptococcus_phage	99.4	4.2e-204
WP_002989605.1|1045947_1046568_+	DUF3862 domain-containing protein	NA	NA	NA	NA	NA
1045628:1045723	attR	ACTCCCACCAGCTCCATCAATGCTTACCGTAAGTAATCATAACTTACTAAAACCTTGTTACATCAAGGTTTTTTCTTTTTGTCTTGTTCATGAGTT	NA	NA	NA	NA
WP_014635534.1|1046824_1049089_-	glycogen/starch/alpha-glucan family phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	43.7	1.2e-11
>prophage 6
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	1082571	1124239	1860554	transposase,protease	Enterococcus_phage(30.0%)	38	NA	NA
WP_063265958.1|1082571_1082865_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_145914715.1|1082813_1083467_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	39.0	5.6e-26
WP_014635546.1|1083506_1083620_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011017915.1|1083636_1084368_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_011017916.1|1084482_1084848_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_014407647.1|1084967_1086188_-	MFS transporter	NA	NA	NA	NA	NA
WP_014635547.1|1086561_1088046_+	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_002984115.1|1088150_1088552_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_032466998.1|1089566_1090958_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	F5CA72	Streptococcus_phi-m46.1-like_phage	98.9	1.7e-261
WP_002984109.1|1091006_1092458_-	LCP family protein	NA	NA	NA	NA	NA
WP_002989310.1|1092665_1093157_-	shikimate kinase	NA	NA	NA	NA	NA
WP_009880589.1|1093149_1094433_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002984102.1|1094543_1095509_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002984100.1|1095510_1096371_-	methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002989302.1|1096386_1097670_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014635551.1|1097678_1098221_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014635552.1|1098458_1099112_-	G-related alpha2-macroglobulin-binding protein GRAB	NA	NA	NA	NA	NA
WP_002989295.1|1099469_1100729_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002989292.1|1100902_1102099_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	65.4	4.5e-138
WP_014635553.1|1102635_1104993_-	pneumococcal-type histidine triad protein	NA	NA	NA	NA	NA
WP_014635554.1|1105196_1106138_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA	NA
WP_012560785.1|1106112_1106316_-	DUF3272 domain-containing protein	NA	NA	NA	NA	NA
WP_014635555.1|1106411_1108082_-	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	40.6	5.1e-47
WP_009881127.1|1108081_1108579_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002992609.1|1108723_1109533_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002989257.1|1109585_1109849_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_002984060.1|1109928_1110555_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	39.7	2.2e-35
WP_002989254.1|1110652_1111738_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.3	1.6e-33
WP_014635557.1|1111847_1113122_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011284931.1|1113216_1114644_-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_014635558.1|1114828_1116562_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_002984031.1|1116566_1116830_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_002989242.1|1117222_1117441_+	redoxin NrdH	NA	A0A249XUR7	Enterococcus_phage	49.3	1.1e-13
WP_002993430.1|1117460_1119620_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.7	2.1e-263
WP_011017933.1|1119952_1120912_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.2	1.8e-126
WP_041174290.1|1120886_1122200_+	chloride channel protein	NA	NA	NA	NA	NA
WP_145914716.1|1122295_1123451_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	41.3	2.4e-48
WP_002995750.1|1123543_1124239_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 7
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	1162429	1193463	1860554	holin,integrase,tail	Streptococcus_phage(64.86%)	43	1164634:1164653	1190836:1190855
WP_014635571.1|1162429_1164292_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.0	7.0e-90
1164634:1164653	attL	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
WP_014635572.1|1164822_1165005_-	hypothetical protein	NA	A3F673	Streptococcus_phage	80.0	1.7e-20
WP_014635573.1|1165244_1166003_+	DNase Mf2	NA	NA	NA	NA	NA
WP_002985327.1|1166113_1166821_+	streptococcal pyrogenic exotoxin SpeC	NA	A0A097PAT7	Streptococcus_pyogenes_phage	27.1	3.9e-09
WP_014635574.1|1166889_1168107_-	glucosaminidase domain-containing protein	NA	A0A1P8VVM5	Streptococcus_phage	60.1	1.1e-163
WP_003058873.1|1168225_1168453_-|holin	phage holin	holin	A7J2B3	Streptococcus_phage	100.0	2.0e-31
WP_011017397.1|1168449_1168722_-	hypothetical protein	NA	A7J2B2	Streptococcus_phage	91.0	5.5e-36
WP_011528779.1|1168733_1169366_-	hypothetical protein	NA	Q938J7	Temperate_phage	50.5	4.0e-45
WP_011528780.1|1169368_1169797_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	87.9	3.7e-63
WP_011528781.1|1169805_1171587_-	hypothetical protein	NA	Q938J9	Temperate_phage	40.2	1.5e-65
WP_011528782.1|1171601_1172717_-	hyaluronoglucosaminidase	NA	A7J2A8	Streptococcus_phage	66.6	4.8e-110
WP_028797149.1|1172713_1174690_-|tail	phage tail protein	tail	M1PKG3	Streptococcus_phage	49.9	8.0e-100
WP_002992579.1|1174671_1175367_-	hypothetical protein	NA	A0A1B1P761	Bacillus_phage	32.2	4.7e-07
WP_011528784.1|1175363_1177721_-	hypothetical protein	NA	M1NRG5	Streptococcus_phage	50.3	2.6e-134
WP_011528785.1|1177720_1178092_-	DUF5361 domain-containing protein	NA	M1PL84	Streptococcus_phage	59.2	1.2e-33
WP_003047548.1|1178106_1178370_-	hypothetical protein	NA	A0A0B5A2F3	Streptococcus_phage	54.7	1.7e-18
WP_014635577.1|1178380_1178959_-	hypothetical protein	NA	A0A1X9I5X2	Streptococcus_phage	62.9	2.9e-58
WP_011528787.1|1178970_1179306_-	hypothetical protein	NA	A0A1P8BMR5	Lactococcus_phage	64.9	1.7e-34
WP_011054692.1|1179550_1179802_-	hypothetical protein	NA	M1PF60	Streptococcus_phage	59.0	1.6e-18
WP_011054693.1|1179798_1179954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054694.1|1179950_1180268_-	DUF1372 family protein	NA	A1EAD7	Streptococcus_phage	71.4	9.0e-30
WP_011054695.1|1180303_1180816_-	hypothetical protein	NA	M1PFM2	Streptococcus_phage	85.9	1.7e-78
WP_011184741.1|1180812_1181145_-	hypothetical protein	NA	M1NS23	Streptococcus_phage	67.0	8.8e-36
WP_011054697.1|1181155_1182502_-	PcfJ family protein	NA	A8ATM0	Listeria_phage	49.4	1.0e-122
WP_011054698.1|1182498_1182894_-	hypothetical protein	NA	A8ATL9	Listeria_phage	52.3	1.4e-19
WP_011054699.1|1183258_1184056_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	J7KGZ1	Streptococcus_phage	83.8	1.3e-130
WP_000594115.1|1184048_1184249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011054700.1|1184245_1185172_-	recombinase RecT	NA	M1NRN6	Streptococcus_phage	71.8	1.2e-90
WP_011528796.1|1185174_1185504_-	hypothetical protein	NA	J7KGX3	Streptococcus_phage	84.4	7.1e-46
WP_002988357.1|1185559_1185766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002988354.1|1185774_1185915_-	hypothetical protein	NA	A0A1X9I6Y1	Streptococcus_phage	54.5	3.4e-05
WP_010922205.1|1185911_1186145_-	hypothetical protein	NA	Q938N1	Temperate_phage	96.1	2.8e-36
WP_011017564.1|1186125_1186512_-	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	51.9	8.1e-25
WP_010922477.1|1187015_1187201_-	hypothetical protein	NA	Q938N3	Temperate_phage	83.6	1.3e-20
WP_010922478.1|1187202_1187514_-	excisionase	NA	A0A1S5SA25	Streptococcus_phage	77.7	5.3e-43
WP_010922479.1|1187783_1187996_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I583	Streptococcus_phage	56.7	1.1e-10
WP_010922480.1|1188197_1188953_+	helix-turn-helix transcriptional regulator	NA	A0A1S5S8S8	Streptococcus_phage	60.8	2.8e-77
WP_011528799.1|1188964_1189483_+	HIRAN domain-containing protein	NA	E8ZDN5	Streptococcus_phage	45.9	1.6e-31
WP_003051793.1|1189606_1190749_+|integrase	site-specific integrase	integrase	M1NRJ9	Streptococcus_phage	77.4	2.4e-173
WP_002983920.1|1190837_1191113_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.0	2.6e-25
1190836:1190855	attR	AATTATTTAACAGCGTCTTT	NA	NA	NA	NA
WP_002989129.1|1191211_1191799_-	YpmS family protein	NA	NA	NA	NA	NA
WP_014635578.1|1191776_1192619_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002983913.1|1192611_1193463_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	35.7	5.4e-13
>prophage 8
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	1255707	1331613	1860554	tRNA,portal,terminase,capsid,integrase,holin,tail	Temperate_phage(51.79%)	81	1319037:1319054	1346297:1346314
WP_014635593.1|1255707_1258356_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.5	1.9e-149
WP_011888719.1|1258357_1258921_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014635594.1|1259530_1259926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014635595.1|1259946_1260201_-	DUF1912 family protein	NA	NA	NA	NA	NA
WP_002983746.1|1260679_1261432_+	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA	NA
WP_014635596.1|1261487_1262561_+	3-dehydroquinate synthase	NA	E5ERI4	Ostreococcus_lucimarinus_virus	31.6	7.3e-31
WP_002983743.1|1262996_1263302_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002983741.1|1263303_1263642_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002994868.1|1263694_1264450_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002983735.1|1264684_1265563_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_080464591.1|1265700_1269207_-	glycoside hydrolase family 2 protein	NA	NA	NA	NA	NA
WP_009880559.1|1269136_1270621_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_014635597.1|1270620_1272345_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	24.9	4.5e-14
WP_011054783.1|1272334_1272940_-	YesL family protein	NA	NA	NA	NA	NA
WP_002995654.1|1273245_1274691_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002988998.1|1274771_1275698_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002988995.1|1275707_1276658_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_014635598.1|1276853_1277732_+	ROK family protein	NA	NA	NA	NA	NA
WP_004219271.1|1278342_1279785_-	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_014635599.1|1279809_1281504_-	beta-N-acetylglucosaminidase	NA	NA	NA	NA	NA
WP_002983707.1|1281554_1282595_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_014635600.1|1282727_1284014_+	glycoside hydrolase family 125 protein	NA	NA	NA	NA	NA
WP_014635601.1|1284028_1286734_+	alpha-mannosidase	NA	NA	NA	NA	NA
WP_011528847.1|1286834_1288190_-	transcriptional regulator RocA	NA	NA	NA	NA	NA
WP_002991789.1|1288854_1290210_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	33.0	1.1e-73
WP_011184907.1|1290400_1290583_-	hypothetical protein	NA	A3F673	Streptococcus_phage	83.3	4.4e-21
WP_011285611.1|1290820_1291621_+	streptodornase Sda3	NA	NA	NA	NA	NA
WP_011017966.1|1291892_1292327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011888701.1|1292376_1293243_-	DUF334 domain-containing protein	NA	Q938J2	Temperate_phage	99.7	1.1e-133
WP_011017840.1|1293230_1293755_-	DUF4065 domain-containing protein	NA	Q938J3	Temperate_phage	100.0	4.0e-99
WP_011888700.1|1293894_1295100_-	glucosaminidase domain-containing protein	NA	Q938J4	Temperate_phage	83.5	1.8e-203
WP_011184730.1|1295211_1295667_-|holin	phage holin family protein	holin	A0A0M4R3G6	Streptococcus_phage	81.5	2.3e-63
WP_011888699.1|1295676_1296309_-	hypothetical protein	NA	Q938J7	Temperate_phage	48.6	3.2e-42
WP_002983467.1|1296311_1296743_-	DUF1617 family protein	NA	Q938J8	Temperate_phage	89.5	1.3e-63
WP_014635603.1|1296754_1298641_-	gp58-like family protein	NA	Q938J9	Temperate_phage	84.6	2.0e-217
WP_011017589.1|1298653_1299664_-	hyaluronoglucosaminidase	NA	Q938K0	Temperate_phage	75.8	7.8e-136
WP_014635605.1|1299660_1301805_-|tail	phage tail protein	tail	Q938K1	Temperate_phage	95.1	0.0e+00
WP_011888697.1|1301801_1302518_-|tail	phage tail family protein	tail	Q938K2	Temperate_phage	99.2	1.2e-135
WP_014635606.1|1302514_1305775_-	tape measure protein	NA	Q938K3	Temperate_phage	99.0	0.0e+00
WP_011888696.1|1305764_1306346_-	bacteriophage Gp15 family protein	NA	Q938K4	Temperate_phage	94.3	1.0e-100
WP_011888695.1|1306349_1306784_-	hypothetical protein	NA	Q938K5	Temperate_phage	97.9	4.2e-70
WP_011018120.1|1306827_1307289_-	hypothetical protein	NA	Q938K6	Temperate_phage	78.8	1.9e-60
WP_011888694.1|1307288_1307687_-|capsid	minor capsid protein	capsid	Q79S87	Temperate_phage	98.5	6.5e-70
WP_010922083.1|1307683_1308040_-|capsid	minor capsid protein	capsid	Q79S88	Temperate_phage	100.0	4.5e-62
WP_011888693.1|1308039_1308372_-|capsid	minor capsid protein	capsid	Q79S86	Temperate_phage	99.1	6.2e-58
WP_011888692.1|1308361_1308778_-	hypothetical protein	NA	Q938K7	Temperate_phage	98.2	9.6e-56
WP_010922080.1|1308831_1309650_-|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	100.0	4.0e-146
WP_011888690.1|1309653_1310268_-	hypothetical protein	NA	Q938K8	Temperate_phage	93.1	3.8e-93
WP_011888689.1|1310393_1310660_-	hypothetical protein	NA	Q938K9	Temperate_phage	95.5	6.4e-37
WP_010922077.1|1310746_1310974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014635607.1|1310973_1312467_-|capsid	phage minor capsid protein	capsid	Q938L1	Temperate_phage	79.8	5.3e-213
WP_010922075.1|1312471_1313974_-|portal	phage portal protein	portal	Q938L2	Temperate_phage	99.6	5.9e-281
WP_010922074.1|1313987_1315199_-|terminase	PBSX family phage terminase large subunit	terminase	Q938L3	Temperate_phage	99.7	3.7e-225
WP_010922073.1|1315281_1315758_-	hypothetical protein	NA	Q938L4	Temperate_phage	68.4	4.9e-48
WP_011888687.1|1317900_1318335_-	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	94.4	1.7e-71
WP_002987493.1|1318618_1318789_-	hypothetical protein	NA	A0A097PAS8	Streptococcus_pyogenes_phage	100.0	2.9e-27
WP_011888686.1|1318785_1319265_-	DUF1642 domain-containing protein	NA	A0A141E0J6	Streptococcus_phage	41.9	6.5e-24
1319037:1319054	attL	CATCTTCTTCAACTTTTT	NA	NA	NA	NA
WP_014635608.1|1319269_1319902_-	SAM-dependent DNA methyltransferase	NA	L0P368	Streptococcus_phage	68.6	3.9e-85
WP_011284869.1|1319903_1320188_-	hypothetical protein	NA	A0A097PAV1	Streptococcus_pyogenes_phage	86.2	2.6e-36
WP_002995952.1|1320184_1320355_-	hypothetical protein	NA	Q938M0	Temperate_phage	87.1	7.9e-09
WP_002995955.1|1320351_1320588_-	DUF3310 domain-containing protein	NA	A0A097PAQ7	Streptococcus_pyogenes_phage	100.0	2.4e-40
WP_041174291.1|1320829_1321186_-	hypothetical protein	NA	A0A097PAU4	Streptococcus_pyogenes_phage	99.2	2.5e-60
WP_011285574.1|1321182_1321623_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A097PAS0	Streptococcus_pyogenes_phage	97.9	4.5e-80
WP_011106686.1|1321622_1321826_-	hypothetical protein	NA	Q938M6	Temperate_phage	100.0	4.7e-32
WP_011285575.1|1321831_1322257_-	single-stranded DNA-binding protein	NA	A0A097PAQ3	Streptococcus_pyogenes_phage	82.3	2.8e-55
WP_014635611.1|1322249_1322924_-	ERF family protein	NA	Q938M8	Temperate_phage	97.8	5.3e-104
WP_011018142.1|1322924_1323407_-	siphovirus Gp157 family protein	NA	Q938M9	Temperate_phage	100.0	8.2e-51
WP_063265964.1|1323428_1323683_-	hypothetical protein	NA	Q938N0	Temperate_phage	97.6	1.4e-41
WP_041174292.1|1323663_1324017_-	hypothetical protein	NA	A0A097PAU3	Streptococcus_pyogenes_phage	54.0	6.3e-16
WP_011888684.1|1324157_1324940_-	ATP-binding protein	NA	A0A097PAQ0	Streptococcus_pyogenes_phage	97.3	1.0e-143
WP_014635613.1|1324926_1325688_-	replication initiator protein A	NA	A0A097PBE7	Streptococcus_pyogenes_phage	100.0	7.5e-131
WP_011017881.1|1325781_1325919_-	hypothetical protein	NA	A0A097PAR2	Streptococcus_pyogenes_phage	100.0	3.4e-18
WP_011888682.1|1325949_1326201_-	hypothetical protein	NA	A0A1P8VVV6	Streptococcus_phage	97.6	2.6e-40
WP_011054585.1|1326271_1326457_-	helix-turn-helix transcriptional regulator	NA	A0A1X9I6I3	Streptococcus_phage	72.1	3.3e-16
WP_011284879.1|1326623_1326863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011888681.1|1326960_1327680_-	phage antirepressor KilAC domain-containing protein	NA	M1Q1T4	Streptococcus_phage	70.3	7.4e-88
WP_014635614.1|1327707_1327920_-	DNA-binding protein	NA	J7KBP9	Streptococcus_phage	95.7	9.2e-31
WP_011888679.1|1328117_1328459_+	helix-turn-helix transcriptional regulator	NA	J7KJZ4	Streptococcus_phage	85.8	1.2e-48
WP_023605207.1|1328442_1328829_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1P8VVK5	Streptococcus_phage	77.6	1.9e-53
WP_014635616.1|1328843_1330265_+	DUF4041 domain-containing protein	NA	M1PLF9	Streptococcus_phage	74.1	1.0e-136
WP_011018152.1|1330446_1331613_+|integrase	tyrosine-type recombinase/integrase	integrase	C5J953	Streptococcus_phage	42.4	2.4e-80
1346297:1346314	attR	CATCTTCTTCAACTTTTT	NA	NA	NA	NA
>prophage 9
NZ_CP013672	Streptococcus pyogenes strain AP53 chromosome, complete genome	1860554	1776704	1797467	1860554	transposase,holin,integrase	Streptococcus_phage(50.0%)	24	1779903:1779923	1794768:1794788
WP_002992187.1|1776704_1777925_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	23.6	3.5e-05
WP_002992189.1|1777935_1779918_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
1779903:1779923	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
WP_014635780.1|1780012_1781164_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	7.9e-84
WP_011185066.1|1781412_1781556_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_003058809.1|1782426_1783194_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
WP_002992503.1|1783347_1783554_+	helix-turn-helix transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
WP_010922759.1|1783587_1784355_+	Bro-N domain-containing protein	NA	A0A0A7S0G2	Clostridium_phage	53.7	5.0e-26
WP_010922760.1|1784364_1784988_+	phage repressor protein	NA	A0A1W6JPC3	Staphylococcus_phage	43.3	2.5e-39
WP_014635782.1|1785014_1785257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000564846.1|1785514_1786648_-|transposase	ISAs1-like element IS1548 family transposase	transposase	NA	NA	NA	NA
WP_010922762.1|1786838_1787180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014635783.1|1787166_1787388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922764.1|1787390_1787582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003058810.1|1787593_1787923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922766.1|1787925_1788198_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	3.6e-19
WP_010922767.1|1788198_1789056_+	replication protein	NA	A0A1X9I6L2	Streptococcus_phage	74.8	4.5e-124
WP_002992487.1|1789024_1790713_+	DNA primase	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
WP_000694577.1|1790999_1791173_+	hypothetical protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
WP_014635784.1|1791178_1791352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014407945.1|1791353_1791863_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
WP_010922769.1|1791936_1792425_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	54.3	6.8e-45
WP_063265969.1|1792828_1793191_+	DUF1492 domain-containing protein	NA	A0A2H4JFS1	uncultured_Caudovirales_phage	30.8	3.5e-06
WP_010922771.1|1793165_1793549_+	ArpU family transcriptional regulator	NA	Q938L8	Temperate_phage	42.1	3.7e-14
WP_014635786.1|1794911_1797467_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	22.9	1.5e-42
1794768:1794788	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
