assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001630725.2_ASM163072v2	NZ_CP050951	Pseudomonas putida strain JQ581 chromosome, complete genome	1	1093179-1093399	1	CRISPRCasFinder	no		WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK	Orphan	CAGCCTGTACCGGCCCTATCGCCGGCAAGCCAGCTCCCACAGGTAACCCACTGCC	55	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK	NA,NA	NA|382aa|up_9|NZ_CP050951.1_1082264_1083410_+	PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional	NA|254aa|up_8|NZ_CP050951.1_1083424_1084186_+	TIGR02521, Uncharacterized_protein_HI_0366, type IV pilus biogenesis/stability protein PilW	NA|342aa|up_7|NZ_CP050951.1_1084182_1085208_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|370aa|up_6|NZ_CP050951.1_1085211_1086321_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|430aa|up_5|NZ_CP050951.1_1086346_1087636_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|214aa|up_4|NZ_CP050951.1_1087675_1088317_+	pfam09976, TPR_21, Tetratricopeptide repeat-like domain	NA|381aa|up_3|NZ_CP050951.1_1088317_1089460_+	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	NA|488aa|up_2|NZ_CP050951.1_1089576_1091040_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|383aa|up_1|NZ_CP050951.1_1091250_1092399_+	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|264aa|up_0|NZ_CP050951.1_1092386_1093178_+	cd07575, Xc-1258_like, Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)	NA|852aa|down_0|NZ_CP050951.1_1093473_1096029_-	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	NA|762aa|down_1|NZ_CP050951.1_1096131_1098417_-	COG4774, Fiu, Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]	NA|227aa|down_2|NZ_CP050951.1_1098638_1099319_+	PRK05467, PRK05467, Fe(II)-dependent oxygenase superfamily protein; Provisional	NA|250aa|down_3|NZ_CP050951.1_1099322_1100072_+	sd00010, SLR, Sel1-like repeat	NA|388aa|down_4|NZ_CP050951.1_1100166_1101330_-	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase	NA|166aa|down_5|NZ_CP050951.1_1101824_1102322_+	PRK12527, PRK12527, RNA polymerase sigma factor; Reviewed	NA|321aa|down_6|NZ_CP050951.1_1102342_1103305_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|810aa|down_7|NZ_CP050951.1_1103413_1105843_+	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|386aa|down_8|NZ_CP050951.1_1105978_1107136_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|218aa|down_9|NZ_CP050951.1_1107132_1107786_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
GCF_001630725.2_ASM163072v2	NZ_CP050951	Pseudomonas putida strain JQ581 chromosome, complete genome	2	1111617-1111699	2	CRISPRCasFinder	no		WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK	Orphan	GCAAGCCAGCTCCCACAAGGATGTGCAC	28	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK	NA,NA|300aa|down_4|NZ_CP050951.1_1115762_1116662_+	NA|250aa|up_9|NZ_CP050951.1_1099322_1100072_+	sd00010, SLR, Sel1-like repeat	NA|388aa|up_8|NZ_CP050951.1_1100166_1101330_-	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase	NA|166aa|up_7|NZ_CP050951.1_1101824_1102322_+	PRK12527, PRK12527, RNA polymerase sigma factor; Reviewed	NA|321aa|up_6|NZ_CP050951.1_1102342_1103305_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|810aa|up_5|NZ_CP050951.1_1103413_1105843_+	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|386aa|up_4|NZ_CP050951.1_1105978_1107136_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|218aa|up_3|NZ_CP050951.1_1107132_1107786_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|305aa|up_2|NZ_CP050951.1_1107782_1108697_-	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|238aa|up_1|NZ_CP050951.1_1108710_1109424_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|528aa|up_0|NZ_CP050951.1_1109980_1111564_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|360aa|down_0|NZ_CP050951.1_1111772_1112852_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|114aa|down_1|NZ_CP050951.1_1112904_1113246_-	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|469aa|down_2|NZ_CP050951.1_1113279_1114686_-	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase	NA|267aa|down_3|NZ_CP050951.1_1114750_1115551_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|300aa|down_4|NZ_CP050951.1_1115762_1116662_+	NA	NA|323aa|down_5|NZ_CP050951.1_1116885_1117854_-	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|323aa|down_6|NZ_CP050951.1_1117853_1118822_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|down_7|NZ_CP050951.1_1118832_1119759_-	PRK10913, PRK10913, dipeptide ABC transporter permease DppC	NA|337aa|down_8|NZ_CP050951.1_1119769_1120780_-	PRK10914, PRK10914, dipeptide ABC transporter permease DppB	NA|537aa|down_9|NZ_CP050951.1_1120871_1122482_-	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold
GCF_001630725.2_ASM163072v2	NZ_CP050951	Pseudomonas putida strain JQ581 chromosome, complete genome	3	4490773-4490850	3	CRISPRCasFinder	no		WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK	Orphan	GATCTGCACACTACCTGTGGGAGC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK	NA,NA	NA|208aa|up_9|NZ_CP050951.1_4478012_4478636_-	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|829aa|up_8|NZ_CP050951.1_4478698_4481185_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|227aa|up_7|NZ_CP050951.1_4481626_4482307_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|236aa|up_6|NZ_CP050951.1_4482363_4483071_+	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|73aa|up_5|NZ_CP050951.1_4483172_4483391_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|757aa|up_4|NZ_CP050951.1_4483535_4485806_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|121aa|up_3|NZ_CP050951.1_4485836_4486199_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|85aa|up_2|NZ_CP050951.1_4486429_4486684_+	TIGR02381, Cold_shock-like_protein_CspD, cold shock domain protein CspD	NA|419aa|up_1|NZ_CP050951.1_4486753_4488010_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|742aa|up_0|NZ_CP050951.1_4488422_4490648_+	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|147aa|down_0|NZ_CP050951.1_4490906_4491347_+	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|375aa|down_1|NZ_CP050951.1_4491404_4492529_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|209aa|down_2|NZ_CP050951.1_4492525_4493152_+	PRK00218, PRK00218, lysogenization regulator HflD	NA|457aa|down_3|NZ_CP050951.1_4493388_4494759_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|389aa|down_4|NZ_CP050951.1_4494840_4496007_+	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|143aa|down_5|NZ_CP050951.1_4495999_4496428_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|654aa|down_6|NZ_CP050951.1_4496628_4498590_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|430aa|down_7|NZ_CP050951.1_4498962_4500252_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|277aa|down_8|NZ_CP050951.1_4500332_4501163_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|260aa|down_9|NZ_CP050951.1_4501364_4502144_+	PRK10621, PRK10621, hypothetical protein; Provisional
GCF_001630725.2_ASM163072v2	NZ_CP050951	Pseudomonas putida strain JQ581 chromosome, complete genome	4	6343515-6343609	4	CRISPRCasFinder	no		WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK	Orphan	GGGGCAACCACCAGGGCAGGTGC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,RT,cas3,csa3,DinG,PD-DExK	NA,NA|162aa|down_9|NZ_CP050951.1_6354688_6355174_+	NA|392aa|up_9|NZ_CP050951.1_6334291_6335467_+	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|109aa|up_8|NZ_CP050951.1_6335476_6335803_+	pfam11872, DUF3392, Protein of unknown function (DUF3392)	NA|241aa|up_7|NZ_CP050951.1_6336425_6337148_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|271aa|up_6|NZ_CP050951.1_6337157_6337970_-	PRK00208, thiG, thiazole synthase; Reviewed	NA|67aa|up_5|NZ_CP050951.1_6338024_6338225_-	PRK05659, PRK05659, sulfur carrier protein ThiS; Validated	NA|124aa|up_4|NZ_CP050951.1_6338327_6338699_-	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown]	NA|237aa|up_3|NZ_CP050951.1_6338763_6339474_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|285aa|up_2|NZ_CP050951.1_6339642_6340497_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|342aa|up_1|NZ_CP050951.1_6340608_6341634_-	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]	NA|224aa|up_0|NZ_CP050951.1_6341630_6342302_-	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	NA|452aa|down_0|NZ_CP050951.1_6344119_6345475_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|497aa|down_1|NZ_CP050951.1_6345467_6346958_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|201aa|down_2|NZ_CP050951.1_6346957_6347560_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|434aa|down_3|NZ_CP050951.1_6347654_6348956_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|455aa|down_4|NZ_CP050951.1_6348948_6350313_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|331aa|down_5|NZ_CP050951.1_6350373_6351366_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|285aa|down_6|NZ_CP050951.1_6351540_6352395_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|222aa|down_7|NZ_CP050951.1_6352430_6353096_-	pfam13972, TetR, Bacterial transcriptional repressor	NA|477aa|down_8|NZ_CP050951.1_6353247_6354678_+	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like	NA|162aa|down_9|NZ_CP050951.1_6354688_6355174_+	NA
