The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015238	Streptococcus pyogenes strain NS53 chromosome, complete genome	1765123	29706	41979	1765123		Synechococcus_phage(28.57%)	8	NA	NA
WP_063631694.1|29706_33432_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	27.6	1.0e-39
WP_032464120.1|33552_35007_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.5	1.3e-54
WP_032464121.1|35034_36057_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	41.4	4.0e-63
WP_009880321.1|36224_36779_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.1	5.2e-25
WP_063631695.1|36962_38510_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	52.4	5.7e-45
WP_014407193.1|38567_39692_-	CHAP domain-containing protein	NA	F8HGP2	Streptococcus_phage	28.6	7.7e-07
WP_063631696.1|39944_41210_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_063631697.1|41487_41979_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.1	1.4e-18
>prophage 2
NZ_CP015238	Streptococcus pyogenes strain NS53 chromosome, complete genome	1765123	85436	100195	1765123	tRNA,holin,integrase	Streptococcus_phage(76.92%)	21	78696:78710	95063:95077
78696:78710	attL	TTTATCAAAAACACA	NA	NA	NA	NA
WP_063632208.1|85436_86582_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	49.7	2.5e-98
WP_011185066.1|86898_87042_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_003058809.1|87912_88680_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
WP_002992503.1|88833_89040_+	helix-turn-helix transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
WP_002992502.1|89073_89274_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SE31	Streptococcus_phage	56.7	3.4e-11
WP_011185071.1|90113_90641_+	hypothetical protein	NA	R9QNB1	Lactococcus_phage	40.2	9.7e-21
WP_063629728.1|90885_91227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922763.1|91213_91435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922764.1|91437_91629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063629727.1|91640_91970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001100459.1|91972_92245_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
WP_063631706.1|92245_93103_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	74.5	2.9e-123
WP_002992487.1|93071_94760_+	DNA primase	NA	A0A1X9I717	Streptococcus_phage	82.1	2.5e-259
WP_000694577.1|95046_95220_+	hypothetical protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
95063:95077	attR	TTTATCAAAAACACA	NA	NA	NA	NA
WP_014407945.1|95400_95910_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
WP_063629723.1|95984_96473_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	53.7	7.6e-44
WP_020905578.1|96876_97239_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
WP_063631707.1|97213_97597_+	ArpU family transcriptional regulator	NA	J7KDQ1	Streptococcus_phage	41.3	2.2e-14
WP_063631708.1|97805_98195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063631709.1|98191_98671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063631710.1|98935_100195_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	40.7	1.2e-72
>prophage 3
NZ_CP015238	Streptococcus pyogenes strain NS53 chromosome, complete genome	1765123	350233	448573	1765123	tRNA,protease,bacteriocin,transposase	Streptococcus_phage(20.69%)	103	NA	NA
WP_002990917.1|350233_350869_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	63.4	2.7e-65
WP_063631765.1|350886_351762_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	46.6	1.8e-67
WP_002985838.1|352423_352747_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	59.4	1.3e-28
WP_002985836.1|352751_353615_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	1.7e-115
WP_023609786.1|353641_354034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063631766.1|354081_354711_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_014407341.1|355010_355367_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	65.0	1.8e-39
WP_063631767.1|355440_356268_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	79.1	8.4e-128
WP_011527483.1|356495_357683_+	L-lactate oxidase	NA	NA	NA	NA	NA
WP_063631768.1|357947_362879_+|protease	CXC chemokine-degrading serine protease SpyCEP	protease	NA	NA	NA	NA
WP_011285405.1|363369_363549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063631769.1|363651_364359_+	DUF1275 domain-containing protein	NA	NA	NA	NA	NA
WP_076612427.1|364598_366599_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	34.9	6.6e-86
WP_032460815.1|367093_368107_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	53.0	4.2e-97
WP_023611736.1|368110_368599_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	R4JF54	Bacillus_phage	37.5	1.0e-11
WP_063631771.1|368565_370746_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	43.3	3.3e-171
WP_063631772.1|370950_371703_-	ADP-ribosyltransferase	NA	NA	NA	NA	NA
WP_063632214.1|372160_372619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_030126125.1|372806_373058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063631773.1|373150_373783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032460982.1|374461_374782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063631774.1|375095_375794_-	streptococcal pyrogenic exotoxin SpeJ	NA	NA	NA	NA	NA
WP_063631775.1|376040_376706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002990844.1|377066_377303_+	DUF2829 domain-containing protein	NA	NA	NA	NA	NA
WP_063631776.1|377295_377994_+	3-oxoacyl-ACP reductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.2	1.6e-10
WP_063631777.1|378069_379029_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002985796.1|379361_380699_+	MFS transporter	NA	NA	NA	NA	NA
WP_063631778.1|380871_382254_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L4K9	Tupanvirus	36.0	8.5e-32
WP_002990829.1|382284_382839_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_063631779.1|382838_383090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_030126996.1|383109_383805_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_063631780.1|383955_384297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002985785.1|384397_385045_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_011017446.1|385190_386123_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002985780.1|386186_386912_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	32.6	1.4e-17
WP_063631781.1|386912_387767_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002990808.1|387914_388721_-	peptidylprolyl isomerase	NA	A0A2H4UTF4	Bodo_saltans_virus	36.6	1.5e-20
WP_063631782.1|388937_391343_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	51.7	2.9e-88
WP_010921962.1|391412_391766_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
WP_002990800.1|392009_392435_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_002985768.1|392540_393230_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_002985765.1|393551_394280_+	UMP kinase	NA	NA	NA	NA	NA
WP_002985763.1|394308_394866_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_063631783.1|394974_395832_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002985759.1|395904_396414_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002985757.1|396410_396626_+	YozE family protein	NA	NA	NA	NA	NA
WP_063631784.1|396781_397957_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	40.5	5.5e-16
WP_043884972.1|398270_400043_+	oleate hydratase	NA	NA	NA	NA	NA
WP_063631785.1|400201_401254_+	PhoH family protein	NA	W8D063	Erwinia_phage	50.0	1.2e-46
WP_009880369.1|401299_401875_+	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_002985748.1|402033_402531_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_002985746.1|402511_402919_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_002985743.1|403038_403935_+	GTPase Era	NA	NA	NA	NA	NA
WP_002985741.1|403954_404431_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_020904958.1|404737_404992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014635333.1|405593_406040_-	ATP-binding cassette domain-containing protein	NA	F2Y302	Organic_Lake_phycodnavirus	36.0	4.1e-12
WP_011528336.1|406262_406973_-|bacteriocin	bacteriocin ABC transporter	bacteriocin	NA	NA	NA	NA
WP_002994577.1|407077_407314_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_002994580.1|407611_407836_+|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_076612428.1|408233_408596_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_028797129.1|409206_409434_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002994587.1|409482_409800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136273544.1|409865_410147_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155118618.1|410095_410749_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	37.9	1.6e-25
WP_076612429.1|410788_411004_+|transposase	transposase	transposase	U5P429	Shigella_phage	42.4	1.0e-08
WP_002992578.1|412863_413613_+	response regulator transcription factor	NA	A0A1V0E029	Clostridioides_phage	28.0	2.1e-21
WP_063631787.1|413613_414948_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_011017462.1|415095_415221_-|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
WP_063631788.1|415297_416662_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_063631789.1|416672_418826_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.3	5.7e-43
WP_002987564.1|420181_420364_-|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_002994504.1|420378_420624_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_021775509.1|421813_422041_+|bacteriocin	bacteriocin class II with double-glycine leader peptide	bacteriocin	NA	NA	NA	NA
WP_003060803.1|422053_422254_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_043884973.1|422578_422743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014407375.1|422792_423032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023605036.1|423266_423668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063631790.1|423918_424989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009880375.1|425081_425480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020833327.1|425827_426097_-	quorum-sensing system protein StcA	NA	NA	NA	NA	NA
WP_063631791.1|426618_426861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128650799.1|427010_427079_-	peptide pheromone SHP2	NA	NA	NA	NA	NA
WP_002990747.1|427167_428034_+	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_063631792.1|428205_429033_+	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	27.8	3.9e-16
WP_063629109.1|429029_429623_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_063628999.1|429812_431315_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	41.3	1.5e-74
WP_076612430.1|431436_432630_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_002990729.1|432626_432773_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002985700.1|432818_433055_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_076612431.1|433148_435482_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.8	2.3e-90
WP_002994152.1|435484_435952_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	57.0	5.7e-41
WP_076612432.1|435957_436677_+	glutamine cyclotransferase	NA	NA	NA	NA	NA
WP_002994169.1|436792_437440_-	pyroglutamyl-peptidase I	NA	NA	NA	NA	NA
WP_014407385.1|437489_438416_-	DUF979 family protein	NA	NA	NA	NA	NA
WP_023078761.1|438415_439099_-	DUF969 domain-containing protein	NA	NA	NA	NA	NA
WP_002994177.1|439309_440236_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	47.5	2.6e-77
WP_063631793.1|440380_440758_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_002985684.1|440768_441434_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002985682.1|441482_442568_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_002985680.1|442741_443743_+	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	28.5	6.1e-24
WP_002985678.1|443873_444872_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_063629000.1|444873_446208_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_063631794.1|446629_448573_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	38.6	2.6e-119
>prophage 4
NZ_CP015238	Streptococcus pyogenes strain NS53 chromosome, complete genome	1765123	648197	658800	1765123		Streptococcus_phage(57.14%)	9	NA	NA
WP_011054348.1|648197_650408_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	69.1	2.9e-268
WP_002985142.1|650515_651679_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	65.1	3.4e-143
WP_002985140.1|651675_652362_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	68.9	7.0e-88
WP_002990262.1|652455_653622_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.8	4.5e-34
WP_038433999.1|653682_654024_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	40.2	3.4e-19
WP_063631838.1|654244_655597_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.1	7.0e-31
WP_063631839.1|655684_656953_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_011017641.1|656982_657423_-	membrane protein	NA	NA	NA	NA	NA
WP_011054352.1|657657_658800_+	cysteine desulfurase	NA	A0A1X6WFP1	Pacmanvirus	27.3	1.4e-24
>prophage 5
NZ_CP015238	Streptococcus pyogenes strain NS53 chromosome, complete genome	1765123	1679875	1697734	1765123	integrase	Streptococcus_phage(46.67%)	26	1681843:1681863	1699327:1699347
WP_023610727.1|1679875_1681858_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.1	2.3e-62
1681843:1681863	attL	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
WP_063629731.1|1681952_1683098_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	44.9	3.5e-84
WP_047236050.1|1683353_1684208_-	DNA damage-inducible protein D	NA	A0A1W6JPJ7	Morganella_phage	52.5	1.0e-56
WP_003058809.1|1685270_1686038_-	helix-turn-helix domain-containing protein	NA	Q76TK4	Streptococcus_pyogenes_phage	83.1	3.6e-72
WP_002992503.1|1686191_1686398_+	helix-turn-helix transcriptional regulator	NA	X2KUC2	Streptococcus_phage	47.0	2.4e-07
WP_076612478.1|1686431_1687199_+	hypothetical protein	NA	A0A0A7S0G2	Clostridium_phage	53.7	5.0e-26
WP_063632180.1|1687208_1687832_+	antirepressor	NA	A0A1W6JPC3	Staphylococcus_phage	43.8	6.5e-40
WP_001261786.1|1687831_1688101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011285274.1|1688735_1688927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063629729.1|1689012_1689519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063632181.1|1689627_1689963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922763.1|1689949_1690171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010922764.1|1690173_1690365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063629727.1|1690376_1690706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001100459.1|1690708_1690981_+	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	60.0	6.1e-19
WP_063632182.1|1690981_1691848_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	72.7	2.6e-119
WP_063629725.1|1691859_1693254_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	38.1	1.0e-48
WP_001069294.1|1693547_1693802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000694577.1|1693798_1693972_+	hypothetical protein	NA	A0A1X9I5U0	Streptococcus_phage	59.6	1.9e-10
WP_014407945.1|1694152_1694662_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	63.5	1.1e-29
WP_063629723.1|1694736_1695225_+	hypothetical protein	NA	A0A1X9I5V2	Streptococcus_phage	53.7	7.6e-44
WP_020905578.1|1695628_1695991_+	DUF1492 domain-containing protein	NA	NA	NA	NA	NA
WP_063632183.1|1695965_1696334_+	DUF1492 domain-containing protein	NA	A0A2H4J7Z8	uncultured_Caudovirales_phage	36.2	5.0e-08
WP_009880486.1|1696377_1696563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012560491.1|1696701_1696884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012560490.1|1697041_1697734_+	hypothetical protein	NA	A0A059T7P7	Listeria_phage	48.9	1.8e-54
1699327:1699347	attR	CAATAATGTTTGTCATAATTT	NA	NA	NA	NA
