assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001640985.1_ASM164098v1	NZ_CP015347	Proteus mirabilis strain AOUC-001 chromosome, complete genome	1	1035882-1036024	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,PD-DExK,TnsE_C	Orphan	CCACCTGTAAAATTGATATCACC	23	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,PD-DExK,TnsE_C	NA,NA|68aa|down_0|NZ_CP015347.1_1037736_1037940_-,NA|49aa|down_1|NZ_CP015347.1_1037940_1038087_-,NA|143aa|down_7|NZ_CP015347.1_1044636_1045065_-,NA|74aa|down_8|NZ_CP015347.1_1045132_1045354_-	NA|251aa|up_9|NZ_CP015347.1_1010811_1011564_-	PRK05287, PRK05287, cell division protein ZapD	NA|205aa|up_8|NZ_CP015347.1_1011566_1012181_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|400aa|up_7|NZ_CP015347.1_1012458_1013658_-	PRK10573, PRK10573, protein transport protein HofC	NA|368aa|up_6|NZ_CP015347.1_1013654_1014758_-	PRK10436, PRK10436, hypothetical protein; Provisional	NA|148aa|up_5|NZ_CP015347.1_1014857_1015301_-	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|181aa|up_4|NZ_CP015347.1_1015511_1016054_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|262aa|up_3|NZ_CP015347.1_1016365_1017151_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|889aa|up_2|NZ_CP015347.1_1017314_1019981_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|622aa|up_1|NZ_CP015347.1_1019993_1021859_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|476aa|up_0|NZ_CP015347.1_1022060_1023488_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|68aa|down_0|NZ_CP015347.1_1037736_1037940_-	NA	NA|49aa|down_1|NZ_CP015347.1_1037940_1038087_-	NA	NA|866aa|down_2|NZ_CP015347.1_1038760_1041358_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|124aa|down_3|NZ_CP015347.1_1041528_1041900_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|287aa|down_4|NZ_CP015347.1_1041991_1042852_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|208aa|down_5|NZ_CP015347.1_1043020_1043644_+	PRK09304, PRK09304, arginine exporter ArgO	NA|245aa|down_6|NZ_CP015347.1_1043734_1044469_+	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|143aa|down_7|NZ_CP015347.1_1044636_1045065_-	NA	NA|74aa|down_8|NZ_CP015347.1_1045132_1045354_-	NA	NA|300aa|down_9|NZ_CP015347.1_1045556_1046456_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator
GCF_001640985.1_ASM164098v1	NZ_CP015347	Proteus mirabilis strain AOUC-001 chromosome, complete genome	2	1353334-1354340	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,PD-DExK,TnsE_C	Type I-E	GTGTTCCCCGTATGCACGGGGATGAACCG,GTGTTCCCCGTATGCACGGGGATGAACCG,GTGTTCCCCGTATGCACGGGGATGAACCG	29,29,29	4	4	1353424-1353455|1353485-1353516|1353546-1353578|1353975-1354006	NZ_CP015347.1_2436292-2436261|NZ_CP015347.1_2431689-2431720|NZ_CP015347.1_2435911-2435879|NZ_CP015347.1_1091451-1091482	I-E:I-E:I-E	15,16,16	16	TypeI-E	c2c9_V-U4,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,PD-DExK,TnsE_C	NA,NA	NA|164aa|up_9|NZ_CP015347.1_1344820_1345312_+	PRK10845, PRK10845, colicin V production protein; Provisional	NA|506aa|up_8|NZ_CP015347.1_1345342_1346860_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|194aa|up_7|NZ_CP015347.1_1346981_1347563_+	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|302aa|up_6|NZ_CP015347.1_1347582_1348488_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|205aa|up_5|NZ_CP015347.1_1348552_1349167_-	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|181aa|up_4|NZ_CP015347.1_1349363_1349906_+	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|349aa|up_3|NZ_CP015347.1_1349902_1350949_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|148aa|up_2|NZ_CP015347.1_1351175_1351619_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|96aa|up_1|NZ_CP015347.1_1351648_1351936_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|419aa|up_0|NZ_CP015347.1_1351946_1353203_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	cas3|898aa|down_0|NZ_CP015347.1_1354584_1357278_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|533aa|down_1|NZ_CP015347.1_1357274_1358873_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|196aa|down_2|NZ_CP015347.1_1358859_1359447_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|down_3|NZ_CP015347.1_1359513_1360548_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|down_4|NZ_CP015347.1_1360560_1361298_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|226aa|down_5|NZ_CP015347.1_1361297_1361975_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|down_6|NZ_CP015347.1_1361975_1362896_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|down_7|NZ_CP015347.1_1362898_1363195_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|408aa|down_8|NZ_CP015347.1_1363695_1364919_+	PRK13340, PRK13340, alanine racemase; Reviewed	NA|800aa|down_9|NZ_CP015347.1_1364996_1367396_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
GCF_001640985.1_ASM164098v1	NZ_CP015347	Proteus mirabilis strain AOUC-001 chromosome, complete genome	3	1363254-1363527	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	c2c9_V-U4,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,PD-DExK,TnsE_C	Type I-E	GTGTTCCCCGTGTATACGGGGATGAACCG,GTGTTCCCCGTGTATACGGGGAT,GTGTTCCCCGTGTATACGGGGATGAACCG	29,23,29	0	0	NA	NA	I-E:NA:I-E	3,4,4	4	TypeI-E	c2c9_V-U4,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,PD-DExK,TnsE_C	NA,NA	NA|96aa|up_9|NZ_CP015347.1_1351648_1351936_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|419aa|up_8|NZ_CP015347.1_1351946_1353203_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	cas3|898aa|up_7|NZ_CP015347.1_1354584_1357278_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|533aa|up_6|NZ_CP015347.1_1357274_1358873_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|196aa|up_5|NZ_CP015347.1_1358859_1359447_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|up_4|NZ_CP015347.1_1359513_1360548_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|up_3|NZ_CP015347.1_1360560_1361298_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|226aa|up_2|NZ_CP015347.1_1361297_1361975_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|up_1|NZ_CP015347.1_1361975_1362896_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|up_0|NZ_CP015347.1_1362898_1363195_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|408aa|down_0|NZ_CP015347.1_1363695_1364919_+	PRK13340, PRK13340, alanine racemase; Reviewed	NA|800aa|down_1|NZ_CP015347.1_1364996_1367396_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|48aa|down_2|NZ_CP015347.1_1367626_1367770_-	pfam01848, HOK_GEF, Hok/gef family	NA|715aa|down_3|NZ_CP015347.1_1368105_1370250_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|401aa|down_4|NZ_CP015347.1_1370327_1371530_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|152aa|down_5|NZ_CP015347.1_1371921_1372377_+	PRK01816, PRK01816, hypothetical protein; Provisional	NA|165aa|down_6|NZ_CP015347.1_1372517_1373012_+	PRK05445, PRK05445, YfbU family protein	NA|221aa|down_7|NZ_CP015347.1_1373046_1373709_+	PRK11587, PRK11587, putative phosphatase; Provisional	NA|610aa|down_8|NZ_CP015347.1_1373818_1375648_+	COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]	NA|194aa|down_9|NZ_CP015347.1_1375709_1376291_-	PRK03826, PRK03826, 5'-nucleotidase; Provisional
GCF_001640985.1_ASM164098v1	NZ_CP015347	Proteus mirabilis strain AOUC-001 chromosome, complete genome	4	3571473-3571554	4	CRISPRCasFinder	no		c2c9_V-U4,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,PD-DExK,TnsE_C	Orphan	CTTGTTCAGCTTCAAGTTGCGCTTGACG	28	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,PD-DExK,TnsE_C	NA,NA	NA|283aa|up_9|NZ_CP015347.1_3560368_3561217_+	PRK10973, PRK10973, sn-glycerol-3-phosphate ABC transporter permease UgpE	NA|365aa|up_8|NZ_CP015347.1_3561218_3562313_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|251aa|up_7|NZ_CP015347.1_3562802_3563555_+	cd07334, M48C_loiP_like, Peptidase M48C Ste24p loiP-like, integral membrane protein	NA|159aa|up_6|NZ_CP015347.1_3563594_3564071_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|396aa|up_5|NZ_CP015347.1_3564185_3565373_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily	NA|139aa|up_4|NZ_CP015347.1_3565384_3565801_+	pfam12568, DUF3749, Acetyltransferase (GNAT) domain	NA|383aa|up_3|NZ_CP015347.1_3565776_3566925_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|285aa|up_2|NZ_CP015347.1_3567019_3567874_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|326aa|up_1|NZ_CP015347.1_3568215_3569193_-	PRK11026, ftsX, cell division ABC transporter subunit FtsX; Provisional	NA|222aa|up_0|NZ_CP015347.1_3569185_3569851_-	PRK10908, PRK10908, cell division ATP-binding protein FtsE	NA|195aa|down_0|NZ_CP015347.1_3571922_3572507_+	PRK10909, rsmD, 16S rRNA m(2)G966-methyltransferase; Provisional	NA|98aa|down_1|NZ_CP015347.1_3572524_3572818_+	PRK10910, PRK10910, DUF1145 family protein	NA|135aa|down_2|NZ_CP015347.1_3572881_3573286_-	pfam10694, DUF2500, Protein of unknown function (DUF2500)	NA|209aa|down_3|NZ_CP015347.1_3573432_3574059_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|797aa|down_4|NZ_CP015347.1_3574229_3576620_+	PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional	NA|1045aa|down_5|NZ_CP015347.1_3576706_3579841_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|380aa|down_6|NZ_CP015347.1_3579866_3581006_-	NF000247, MexA, MexA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|85aa|down_7|NZ_CP015347.1_3581716_3581971_-	PRK00299, PRK00299, sulfurtransferase TusA	NA|225aa|down_8|NZ_CP015347.1_3582181_3582856_+	PRK11212, PRK11212, 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter	NA|368aa|down_9|NZ_CP015347.1_3583175_3584279_+	PRK09423, gldA, glycerol dehydrogenase; Provisional
