assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	1	477234-477334	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|70aa|up_8|NZ_CP013957.1_468806_469016_-,NA|128aa|up_6|NZ_CP013957.1_469840_470224_-,NA|34aa|up_0|NZ_CP013957.1_476458_476560_+,NA|221aa|down_1|NZ_CP013957.1_478424_479087_-	NA|84aa|up_9|NZ_CP013957.1_468516_468768_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP013957.1_468806_469016_-	NA	NA|194aa|up_7|NZ_CP013957.1_469193_469775_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP013957.1_469840_470224_-	NA	NA|209aa|up_5|NZ_CP013957.1_470478_471105_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP013957.1_471549_473073_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP013957.1_473088_473658_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP013957.1_474149_474905_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP013957.1_474985_476374_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP013957.1_476458_476560_+	NA	NA|319aa|down_0|NZ_CP013957.1_477350_478307_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP013957.1_478424_479087_-	NA	NA|136aa|down_2|NZ_CP013957.1_479229_479637_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP013957.1_480149_480728_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP013957.1_480727_481996_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP013957.1_482033_483500_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP013957.1_483524_485066_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP013957.1_485133_486327_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP013957.1_486353_486554_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP013957.1_487051_487282_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	2	742656-742748	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_3|NZ_CP013957.1_739139_739247_+,NA|169aa|down_4|NZ_CP013957.1_746497_747004_+,NA|239aa|down_5|NZ_CP013957.1_747165_747882_+	NA|313aa|up_9|NZ_CP013957.1_733341_734280_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP013957.1_734490_735027_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP013957.1_735195_735672_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP013957.1_735711_737007_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP013957.1_737034_737556_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP013957.1_738054_739065_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP013957.1_739139_739247_+	NA	NA|139aa|up_2|NZ_CP013957.1_739339_739756_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP013957.1_739752_741414_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP013957.1_741802_742438_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NZ_CP013957.1_742816_743704_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP013957.1_743851_744802_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP013957.1_744858_745578_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP013957.1_745561_746362_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP013957.1_746497_747004_+	NA	NA|239aa|down_5|NZ_CP013957.1_747165_747882_+	NA	NA|263aa|down_6|NZ_CP013957.1_748050_748839_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP013957.1_749089_749464_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP013957.1_750411_751341_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP013957.1_751535_751760_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	3	858404-858486	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|69aa|up_9|NZ_CP013957.1_845004_845211_+,NA|34aa|down_1|NZ_CP013957.1_859942_860044_+,NA|52aa|down_8|NZ_CP013957.1_868224_868380_+	NA|69aa|up_9|NZ_CP013957.1_845004_845211_+	NA	NA|237aa|up_8|NZ_CP013957.1_845298_846009_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP013957.1_845992_846997_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP013957.1_847470_849411_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP013957.1_849681_851565_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP013957.1_851576_853358_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP013957.1_853579_854557_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP013957.1_854549_856064_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP013957.1_856303_857362_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP013957.1_857712_858255_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP013957.1_858934_859852_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP013957.1_859942_860044_+	NA	NA|502aa|down_2|NZ_CP013957.1_860122_861628_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP013957.1_861968_862469_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP013957.1_862488_863355_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP013957.1_864155_864554_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP013957.1_864516_866622_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP013957.1_866739_867711_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP013957.1_868224_868380_+	NA	NA|324aa|down_9|NZ_CP013957.1_868418_869390_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	4	899457-899537	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	9	899483-899511|899483-899511|899483-899511|899483-899511|899483-899511|899483-899511|899483-899511|899483-899511|899483-899511	NZ_CP013957.1_438784-438756|NZ_CP013957.1_1897079-1897051|NZ_CP013957.1_317172-317144|NZ_CP013957.1_948886-948914|NZ_CP013957.1_1031906-1031934|NZ_CP013957.1_1232990-1232962|NZ_CP013957.1_1710470-1710498|NZ_CP013957.1_2106655-2106683|NZ_CP013957.1_2775633-2775605	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|35aa|up_7|NZ_CP013957.1_890370_890475_+,NA|36aa|up_5|NZ_CP013957.1_891907_892015_+,NA	NA|191aa|up_9|NZ_CP013957.1_886811_887384_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP013957.1_887797_890329_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP013957.1_890370_890475_+	NA	NA|370aa|up_6|NZ_CP013957.1_890643_891754_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP013957.1_891907_892015_+	NA	NA|280aa|up_4|NZ_CP013957.1_892162_893002_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP013957.1_893175_893826_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP013957.1_893822_894059_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP013957.1_894327_896313_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP013957.1_896320_899167_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP013957.1_899773_900706_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP013957.1_900711_901551_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP013957.1_901558_902044_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP013957.1_902051_903491_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP013957.1_903557_904493_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP013957.1_905316_906228_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP013957.1_906224_907220_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP013957.1_907328_908273_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP013957.1_908845_909433_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP013957.1_909675_910578_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	5	948820-948901	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	948844-948877|948844-948877	NZ_CP013957.1_1439545-1439512|NZ_CP013957.1_1531363-1531396	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|194aa|up_9|NZ_CP013957.1_941923_942505_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP013957.1_942577_943195_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP013957.1_943349_943844_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP013957.1_944242_944665_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP013957.1_944812_945529_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP013957.1_945611_946151_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP013957.1_946300_946621_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP013957.1_946764_947121_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP013957.1_947278_947659_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP013957.1_947837_948716_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP013957.1_949457_949844_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP013957.1_949836_950133_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP013957.1_950382_951408_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP013957.1_951400_952096_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP013957.1_952113_952935_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP013957.1_953078_954299_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP013957.1_954386_955115_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP013957.1_955138_955867_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|71aa|down_8|NZ_CP013957.1_956926_957139_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|91aa|down_9|NZ_CP013957.1_957139_957412_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	6	1012236-1012518	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	3	7	1012266-1012291|1012266-1012291|1012266-1012291|1012380-1012405|1012380-1012405|1012436-1012488|1012436-1012488	NZ_CP013957.1_904910-904885|NZ_CP013957.1_1012210-1012235|NZ_CP013957.1_867877-867902|NZ_CP013957.1_2095956-2095931|NZ_CP013957.1_438622-438647|NZ_CP013957.1_281496-281548|NZ_CP013957.1_2890332-2890280	NA	4	4	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP013957.1_1001124_1002621_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|114aa|up_8|NZ_CP013957.1_1002613_1002955_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP013957.1_1002954_1003383_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP013957.1_1003375_1005781_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP013957.1_1005911_1006295_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP013957.1_1006358_1006952_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP013957.1_1007367_1007745_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP013957.1_1008106_1009234_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP013957.1_1009541_1010732_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP013957.1_1010840_1012085_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP013957.1_1012587_1013517_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP013957.1_1013758_1015138_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP013957.1_1015127_1016333_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP013957.1_1016683_1018015_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP013957.1_1018339_1018915_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP013957.1_1018919_1019444_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP013957.1_1019459_1020035_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP013957.1_1020194_1023671_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP013957.1_1023671_1027325_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP013957.1_1027490_1028393_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	7	1227519-1227820	2	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGCAAGTTGGNGNGGNNCCNA	21	3	6	1227540-1227574|1227653-1227687|1227765-1227799|1227765-1227799|1227765-1227799|1227765-1227799	NZ_CP013957.1_1227484-1227518|NZ_CP013957.1_1227484-1227518|NZ_CP013957.1_2212900-2212866|NZ_CP013957.1_858386-858420|NZ_CP013957.1_904955-904921|NZ_CP013957.1_2890377-2890343	NA	5	5	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|56aa|up_6|NZ_CP013957.1_1223256_1223424_+,NA|31aa|up_4|NZ_CP013957.1_1224263_1224356_-,NA|169aa|up_2|NZ_CP013957.1_1225388_1225895_+,NA|62aa|down_0|NZ_CP013957.1_1227975_1228161_-,NA|78aa|down_1|NZ_CP013957.1_1228782_1229016_-,NA|49aa|down_4|NZ_CP013957.1_1232456_1232603_+,NA|75aa|down_5|NZ_CP013957.1_1232559_1232784_+	NA|267aa|up_9|NZ_CP013957.1_1221233_1222034_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_8|NZ_CP013957.1_1222045_1222633_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_7|NZ_CP013957.1_1222625_1223129_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_6|NZ_CP013957.1_1223256_1223424_+	NA	NA|110aa|up_5|NZ_CP013957.1_1223617_1223947_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|31aa|up_4|NZ_CP013957.1_1224263_1224356_-	NA	NA|134aa|up_3|NZ_CP013957.1_1224315_1224717_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NZ_CP013957.1_1225388_1225895_+	NA	NA|166aa|up_1|NZ_CP013957.1_1226153_1226651_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NZ_CP013957.1_1226804_1227155_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NZ_CP013957.1_1227975_1228161_-	NA	NA|78aa|down_1|NZ_CP013957.1_1228782_1229016_-	NA	NA|320aa|down_2|NZ_CP013957.1_1229492_1230452_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|down_3|NZ_CP013957.1_1230716_1231889_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|down_4|NZ_CP013957.1_1232456_1232603_+	NA	NA|75aa|down_5|NZ_CP013957.1_1232559_1232784_+	NA	NA|239aa|down_6|NZ_CP013957.1_1233284_1234001_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|NZ_CP013957.1_1234108_1234834_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|NZ_CP013957.1_1234928_1235654_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|NZ_CP013957.1_1236091_1237093_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	8	1233024-1233109	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1233054-1233079|1233054-1233079|1233054-1233079|1233054-1233079|1233054-1233079	NZ_CP013957.1_317012-317037|NZ_CP013957.1_867933-867958|NZ_CP013957.1_904910-904885|NZ_CP013957.1_867877-867902|NZ_CP013957.1_867989-868014	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_8|NZ_CP013957.1_1225388_1225895_+,NA|62aa|up_5|NZ_CP013957.1_1227975_1228161_-,NA|78aa|up_4|NZ_CP013957.1_1228782_1229016_-,NA|49aa|up_1|NZ_CP013957.1_1232456_1232603_+,NA|75aa|up_0|NZ_CP013957.1_1232559_1232784_+,NA|76aa|down_6|NZ_CP013957.1_1240083_1240311_+	NA|134aa|up_9|NZ_CP013957.1_1224315_1224717_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NZ_CP013957.1_1225388_1225895_+	NA	NA|166aa|up_7|NZ_CP013957.1_1226153_1226651_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NZ_CP013957.1_1226804_1227155_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NZ_CP013957.1_1227975_1228161_-	NA	NA|78aa|up_4|NZ_CP013957.1_1228782_1229016_-	NA	NA|320aa|up_3|NZ_CP013957.1_1229492_1230452_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|up_2|NZ_CP013957.1_1230716_1231889_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|up_1|NZ_CP013957.1_1232456_1232603_+	NA	NA|75aa|up_0|NZ_CP013957.1_1232559_1232784_+	NA	NA|239aa|down_0|NZ_CP013957.1_1233284_1234001_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP013957.1_1234108_1234834_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP013957.1_1234928_1235654_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP013957.1_1236091_1237093_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP013957.1_1237115_1238048_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP013957.1_1238219_1239776_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP013957.1_1240083_1240311_+	NA	NA|316aa|down_7|NZ_CP013957.1_1240615_1241563_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP013957.1_1241811_1242000_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP013957.1_1242911_1243046_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	9	2459832-2459982	7	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|NZ_CP013957.1_2454703_2454934_-,NA|364aa|up_0|NZ_CP013957.1_2458722_2459814_+,NA|35aa|down_0|NZ_CP013957.1_2460313_2460418_-,NA|31aa|down_2|NZ_CP013957.1_2462529_2462622_+	NA|221aa|up_9|NZ_CP013957.1_2449335_2449998_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|237aa|up_8|NZ_CP013957.1_2450312_2451023_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_7|NZ_CP013957.1_2451143_2451587_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_6|NZ_CP013957.1_2451786_2452200_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|77aa|up_5|NZ_CP013957.1_2454703_2454934_-	NA	NA|313aa|up_4|NZ_CP013957.1_2454964_2455903_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP013957.1_2456337_2457003_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP013957.1_2457154_2457475_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP013957.1_2457476_2458457_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP013957.1_2458722_2459814_+	NA	NA|35aa|down_0|NZ_CP013957.1_2460313_2460418_-	NA	NA|379aa|down_1|NZ_CP013957.1_2461104_2462241_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP013957.1_2462529_2462622_+	NA	NA|286aa|down_3|NZ_CP013957.1_2463326_2464184_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP013957.1_2464251_2465034_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP013957.1_2465265_2467071_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP013957.1_2467751_2469290_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP013957.1_2469324_2471457_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP013957.1_2471468_2471903_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP013957.1_2471902_2473009_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_001641025.1_ASM164102v1	NZ_CP013957	Staphylococcus aureus strain V521 isolate Sequencing chromosome, complete genome	10	2583998-2584191	3	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	15	2584021-2584053|2584021-2584053|2584021-2584053|2584021-2584053|2584021-2584053|2584077-2584112|2584077-2584112|2584077-2584112|2584077-2584112|2584077-2584112|2584136-2584168|2584136-2584168|2584136-2584168|2584136-2584168|2584136-2584168	NZ_CP013957.1_1233043-1233011|NZ_CP013957.1_1439499-1439467|NZ_CP013957.1_1531409-1531441|NZ_CP013957.1_2095911-2095943|NZ_CP013957.1_2856077-2856109|NZ_CP013957.1_1232990-1232955|NZ_CP013957.1_1897079-1897044|NZ_CP013957.1_317172-317137|NZ_CP013957.1_1710470-1710505|NZ_CP013957.1_2106655-2106690|NZ_CP013957.1_904865-904897|NZ_CP013957.1_1233043-1233011|NZ_CP013957.1_1439499-1439467|NZ_CP013957.1_2095911-2095943|NZ_CP013957.1_2856077-2856109	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP013957.1_2574525_2574690_+,NA|106aa|up_8|NZ_CP013957.1_2574934_2575252_+,NA|84aa|up_5|NZ_CP013957.1_2580376_2580628_+,NA|57aa|up_0|NZ_CP013957.1_2583767_2583938_+,NA	NA|55aa|up_9|NZ_CP013957.1_2574525_2574690_+	NA	NA|106aa|up_8|NZ_CP013957.1_2574934_2575252_+	NA	NA|1056aa|up_7|NZ_CP013957.1_2575438_2578606_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP013957.1_2578722_2579988_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP013957.1_2580376_2580628_+	NA	NA|255aa|up_4|NZ_CP013957.1_2580619_2581384_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP013957.1_2581545_2581986_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP013957.1_2581978_2583190_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP013957.1_2583291_2583642_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP013957.1_2583767_2583938_+	NA	NA|341aa|down_0|NZ_CP013957.1_2584332_2585355_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP013957.1_2585374_2585974_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP013957.1_2585980_2586214_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP013957.1_2586219_2586666_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP013957.1_2586679_2587165_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP013957.1_2587161_2588421_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP013957.1_2588483_2588978_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP013957.1_2588979_2589486_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP013957.1_2589516_2590521_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP013957.1_2590690_2591296_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
