The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	748519	755609	9106064		Salmonella_phage(16.67%)	6	NA	NA
WP_011084134.1|748519_748984_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	8.5e-45
WP_011084135.1|749103_749589_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	45.8	6.8e-21
WP_011084136.1|749697_750252_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	31.8	1.7e-15
WP_011084137.1|750267_751953_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.9	6.9e-44
WP_011084138.1|752146_753610_-	penicillin-binding protein	NA	B6DZZ7	Stx2-converting_phage	35.1	3.0e-27
WP_011084139.1|753800_755609_-	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.0	3.8e-32
>prophage 2
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	1074220	1225402	9106064	integrase,transposase	Paenibacillus_phage(16.67%)	95	1099510:1099528	1118145:1118163
WP_085971921.1|1074220_1074981_-|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_038968054.1|1075629_1076964_+	NtaA/DmoA family FMN-dependent monooxygenase	NA	NA	NA	NA	NA
WP_011084417.1|1076996_1078685_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011084418.1|1078681_1079644_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_011084419.1|1079640_1080522_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014498066.1|1080518_1082246_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.7	5.3e-15
WP_014498065.1|1082534_1082717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074076595.1|1083486_1083792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_109866565.1|1084213_1085343_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	1.1e-18
WP_014498064.1|1085806_1086643_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_011084426.1|1086626_1087493_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_011084433.1|1094310_1094994_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_014498060.1|1094990_1096025_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_011084435.1|1096021_1097224_+	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_011084436.1|1097229_1097466_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_162131539.1|1097578_1097773_-	hypothetical protein	NA	NA	NA	NA	NA
1099510:1099528	attL	GCAGTGCGGATGCGGCAGG	NA	NA	NA	NA
WP_011084444.1|1104232_1107349_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_011084445.1|1107623_1108631_-	GDP-L-fucose synthase	NA	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	51.7	3.7e-85
WP_014498053.1|1108602_1109688_-	GDP-mannose 4,6-dehydratase	NA	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	64.7	3.7e-131
WP_011084447.1|1111020_1112847_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	40.0	1.2e-105
WP_038967990.1|1113167_1113401_-	cold shock domain-containing protein	NA	NA	NA	NA	NA
WP_011084449.1|1114240_1114597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084450.1|1114973_1115384_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9SGU9	Bradyrhizobium_phage	36.6	1.1e-06
WP_011084451.1|1115401_1115719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080584307.1|1116283_1116472_+	plasmid maintenance system killer protein	NA	A0A2L1IV28	Escherichia_phage	36.7	1.6e-05
WP_018647863.1|1117418_1117634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026312792.1|1119291_1119780_+	hypothetical protein	NA	NA	NA	NA	NA
1118145:1118163	attR	CCTGCCGCATCCGCACTGC	NA	NA	NA	NA
WP_011084456.1|1120521_1121232_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.1	1.4e-62
WP_011084458.1|1122745_1123552_-	hypothetical protein	NA	A0A023NHS3	Nitrincola_phage	30.1	1.0e-05
WP_011084459.1|1123826_1124633_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014498042.1|1124969_1125161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076611612.1|1125572_1126352_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	34.7	2.4e-07
WP_011084462.1|1126402_1127752_-|transposase	IS701-like element ISBj6 family transposase	transposase	NA	NA	NA	NA
WP_011084464.1|1128651_1130190_+	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_011084467.1|1130904_1131108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038968041.1|1131736_1132036_-	hypothetical protein	NA	A0A291AUP1	Sinorhizobium_phage	35.8	1.8e-08
WP_011084470.1|1132474_1133185_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_011084472.1|1134602_1135598_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_035668701.1|1135983_1136184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018648886.1|1138513_1138960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084477.1|1140097_1140925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038968076.1|1140848_1141514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084479.1|1141503_1142145_+	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_011084480.1|1142141_1145642_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_011084481.1|1145638_1146844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084482.1|1146830_1147706_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_035668232.1|1147708_1148026_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011084484.1|1148179_1149316_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011084485.1|1149302_1150784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084486.1|1150796_1151558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084487.1|1151554_1152733_+	DUF1488 domain-containing protein	NA	NA	NA	NA	NA
WP_162131541.1|1153616_1153778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084489.1|1153893_1154655_-|transposase	IS6-like element ISBj7 family transposase	transposase	NA	NA	NA	NA
WP_011084490.1|1154898_1156761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028176066.1|1157419_1157935_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011084494.1|1157931_1158594_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_085971921.1|1158759_1159519_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_011084496.1|1159992_1160283_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_011084497.1|1160279_1160594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498007.1|1161529_1161718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035668747.1|1162043_1163423_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_011084500.1|1164147_1164651_-	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA	NA
WP_014498004.1|1164647_1164989_-	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA	NA
WP_011084508.1|1173975_1174233_-	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_014497999.1|1174802_1175024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084509.1|1175548_1175893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084511.1|1176443_1176800_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011084512.1|1176853_1178401_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	38.6	2.1e-84
WP_038968102.1|1178614_1179619_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_011084514.1|1179886_1180951_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084515.1|1180998_1182795_-	recombinase family protein	NA	NA	NA	NA	NA
WP_011084516.1|1183214_1185467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162494197.1|1189237_1190065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084518.1|1190414_1191965_+|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
WP_011084519.1|1191925_1192771_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
WP_011084521.1|1193178_1193757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038968105.1|1195837_1197106_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_014497989.1|1197903_1198290_-	response regulator	NA	NA	NA	NA	NA
WP_011084526.1|1198374_1199058_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011084527.1|1199054_1201724_-	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	25.0	1.9e-08
WP_011084514.1|1202602_1203667_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084529.1|1204623_1205940_-	C4-dicarboxylate transporter DctA	NA	NA	NA	NA	NA
WP_011084531.1|1208304_1209396_+	hydrogenase small subunit	NA	NA	NA	NA	NA
WP_011084532.1|1209409_1211200_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_014497983.1|1211204_1211897_+	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_011084536.1|1212532_1212823_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_011084538.1|1213700_1214252_+	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
WP_011084541.1|1215433_1215775_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_085967575.1|1216623_1217752_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084544.1|1218036_1219782_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_028154318.1|1219778_1220921_+	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_011084546.1|1220917_1221964_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_011084547.1|1222348_1223461_+	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_011084548.1|1223999_1224194_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_011084549.1|1224337_1225402_+|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	1256822	1400541	9106064	transposase	Paenibacillus_phage(16.67%)	92	NA	NA
WP_038968105.1|1256822_1258091_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_011084589.1|1258147_1259299_-	molybdenum ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_158516560.1|1260095_1260404_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084591.1|1260400_1260754_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011084592.1|1260826_1262431_+|transposase	IS66-like element ISBj7 family transposase	transposase	A0A218MNE7	uncultured_virus	33.5	1.8e-65
WP_161170740.1|1264197_1264494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497954.1|1265582_1265972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084599.1|1267046_1267766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084600.1|1267820_1268570_-	hypothetical protein	NA	A0A1X9SH03	Bradyrhizobium_phage	43.6	4.4e-43
WP_011084606.1|1273014_1273437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084608.1|1274004_1274595_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011084609.1|1274625_1276725_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_011084610.1|1276734_1277163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084611.1|1277165_1277702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084612.1|1277735_1278629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497948.1|1278745_1278937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084613.1|1278979_1279288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497947.1|1279385_1279946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084615.1|1280196_1281651_+	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_011084549.1|1281805_1282870_+|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
WP_011084616.1|1283440_1283644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161966260.1|1284060_1284237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035668374.1|1284793_1285414_-	nodulation protein NolW	NA	NA	NA	NA	NA
WP_026312858.1|1285668_1286169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084621.1|1286177_1287041_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_011084622.1|1287052_1287691_+	nodulation protein	NA	NA	NA	NA	NA
WP_011084623.1|1287687_1288308_+	type III secretion system stator protein SctL	NA	NA	NA	NA	NA
WP_011084624.1|1288304_1289660_+	type III secretion system ATPase SctN	NA	NA	NA	NA	NA
WP_011084625.1|1289635_1290172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084626.1|1290168_1291290_+	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_011084627.1|1291282_1291948_+	type III secretion system export apparatus protein SctR	NA	NA	NA	NA	NA
WP_011084628.1|1291950_1292226_+	translocation protein	NA	NA	NA	NA	NA
WP_011084629.1|1292236_1293058_+	type III secretion system export apparatus protein SctT	NA	NA	NA	NA	NA
WP_011084630.1|1293054_1294092_+	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_085971921.1|1294101_1294861_-|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_011084514.1|1298432_1299497_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084637.1|1300500_1300902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084638.1|1301736_1301943_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084639.1|1302072_1303407_-|transposase	IS5-like element ISBj2_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	41.6	2.1e-40
WP_011084760.1|1308479_1308809_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_011084646.1|1311570_1313886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084647.1|1314081_1314744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018647881.1|1314754_1316209_-	type II and III secretion system protein family protein	NA	NA	NA	NA	NA
WP_011084649.1|1316235_1316925_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011084652.1|1318938_1320006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084653.1|1320604_1321039_+	VirK protein	NA	NA	NA	NA	NA
WP_014497924.1|1321501_1322410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084657.1|1323816_1325298_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_011084658.1|1325482_1326364_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011084659.1|1326914_1328156_+	cytochrome P450	NA	NA	NA	NA	NA
WP_011084660.1|1328582_1330826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084661.1|1331156_1332167_-|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	64.8	1.1e-126
WP_011084662.1|1332309_1332603_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011084664.1|1333186_1333570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084665.1|1333677_1334223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084668.1|1335362_1335905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084669.1|1336458_1336665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084670.1|1337054_1338446_-	MFS transporter	NA	NA	NA	NA	NA
WP_011084675.1|1341712_1342288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084678.1|1344443_1346252_-	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_109866547.1|1346634_1347394_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.2e-08
WP_011084680.1|1348133_1348550_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_011084682.1|1349234_1350563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084684.1|1351969_1352584_+	J domain-containing protein	NA	NA	NA	NA	NA
WP_011084685.1|1353707_1354469_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084688.1|1356762_1358217_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_011084689.1|1358901_1359177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497906.1|1359312_1359483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161966258.1|1361123_1361342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018645270.1|1361775_1363086_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011084695.1|1363155_1364118_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_011084696.1|1364130_1364991_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_011084697.1|1364987_1365929_+	ribokinase	NA	NA	NA	NA	NA
WP_011084698.1|1365925_1366696_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_011084699.1|1366688_1367516_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011084700.1|1367515_1368628_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	36.5	2.3e-24
WP_011084701.1|1368581_1370441_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_161966257.1|1370445_1371057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084703.1|1371487_1372999_-|transposase	ISNCY-like element ISBj12 family transposase	transposase	NA	NA	NA	NA
WP_011084519.1|1373112_1373958_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
WP_011084704.1|1373918_1375457_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_018648284.1|1376383_1376617_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_011084708.1|1379111_1380869_+	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
WP_018648285.1|1380925_1381096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084710.1|1381800_1382253_-	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	26.9	6.6e-10
WP_011084514.1|1385610_1386675_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084715.1|1386692_1387529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084718.1|1389093_1390569_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	3.0e-27
WP_080668322.1|1392459_1392792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084720.1|1392929_1393634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_018648597.1|1393745_1394177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109866565.1|1399412_1400541_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	1.1e-18
>prophage 4
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	1438028	1483189	9106064	transposase	Acidithiobacillus_phage(50.0%)	31	NA	NA
WP_011084757.1|1438028_1439375_-|transposase	IS5-like element ISBj5_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
WP_011084759.1|1439964_1441722_-	recombinase family protein	NA	A0A1B2LRQ3	Wolbachia_phage	32.5	7.9e-67
WP_011084760.1|1441862_1442192_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_011084761.1|1442326_1442923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084764.1|1443735_1444527_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162130978.1|1445504_1445675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154694111.1|1445791_1445932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084771.1|1447716_1450035_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_011084772.1|1450240_1450540_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014497843.1|1450620_1450776_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084776.1|1452868_1453096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084777.1|1453409_1455389_-	RiPP maturation radical SAM protein 1	NA	NA	NA	NA	NA
WP_011084778.1|1456089_1456482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026312699.1|1456528_1456996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084781.1|1457712_1458078_-	Nif11 family protein	NA	NA	NA	NA	NA
WP_011084785.1|1459537_1460857_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_011084786.1|1460856_1461108_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011084788.1|1461552_1463109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084789.1|1463098_1463737_+	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_011084790.1|1463733_1467168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084791.1|1467170_1468340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084792.1|1468827_1469145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084793.1|1469862_1471395_+	polygalacturonase	NA	NA	NA	NA	NA
WP_011084794.1|1471612_1472653_+	pectinesterase	NA	NA	NA	NA	NA
WP_108914090.1|1473443_1473773_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_011084519.1|1474780_1475626_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	35.0	1.1e-34
WP_011084518.1|1475586_1477137_-|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
WP_018647405.1|1477474_1478419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084757.1|1480401_1481748_-|transposase	IS5-like element ISBj5_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
WP_014497829.1|1482165_1482801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084799.1|1482808_1483189_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	1522107	1618463	9106064	protease,transposase	Acinetobacter_phage(14.29%)	60	NA	NA
WP_011084757.1|1522107_1523454_+|transposase	IS5-like element ISBj5_B family transposase	transposase	K4ICS3	Acidithiobacillus_phage	43.4	8.5e-45
WP_018647484.1|1523879_1524347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084841.1|1524816_1526127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084842.1|1526154_1526934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_133415003.1|1526930_1527191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084844.1|1528063_1528297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084845.1|1528488_1529502_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.5	5.0e-50
WP_011084846.1|1529931_1530231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497799.1|1530698_1530932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084848.1|1532440_1533685_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_011084854.1|1538212_1539109_+|protease	YopT-type cysteine protease domain-containing protein	protease	NA	NA	NA	NA
WP_011084855.1|1540348_1541989_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	58.9	6.0e-170
WP_011084856.1|1542071_1542386_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	60.6	7.3e-24
WP_011084858.1|1543335_1543983_+	FkbM family methyltransferase	NA	Q58M88	Prochlorococcus_phage	26.9	5.9e-12
WP_011084859.1|1544805_1546002_-	flavin-dependent monooxygenase	NA	NA	NA	NA	NA
WP_011084861.1|1547868_1548624_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_011084862.1|1548620_1549409_-	thermonuclease family protein	NA	NA	NA	NA	NA
WP_011084863.1|1550468_1551296_-	nodulate formation efficiency C protein	NA	NA	NA	NA	NA
WP_131234261.1|1551539_1551830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084864.1|1552484_1554830_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_026312600.1|1556859_1557066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497780.1|1560666_1560852_+	hypothetical protein	NA	A0A1X9SH55	Bradyrhizobium_phage	63.8	9.2e-11
WP_011084514.1|1564205_1565270_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084875.1|1568199_1569258_+	fatty acid desaturase family protein	NA	NA	NA	NA	NA
WP_011084876.1|1569254_1570070_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA	NA
WP_014497774.1|1570200_1571103_+	DMT family transporter	NA	NA	NA	NA	NA
WP_011084878.1|1571099_1572386_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_011084879.1|1572385_1573723_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_011084882.1|1576695_1579506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084883.1|1579834_1580122_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084884.1|1580118_1580592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497769.1|1581262_1581859_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	5.8e-46
WP_038967940.1|1581855_1583250_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	34.7	1.9e-47
WP_011084888.1|1583403_1583721_-	Dabb family protein	NA	NA	NA	NA	NA
WP_011084889.1|1583856_1584492_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084890.1|1584606_1585602_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_011084891.1|1585651_1586005_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_011084892.1|1586081_1587236_+	8-amino-7-oxononanoate synthase	NA	G9E4Q1	Emiliania_huxleyi_virus	28.2	1.9e-21
WP_011084893.1|1587232_1587868_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_011084894.1|1587864_1589130_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.6	2.9e-10
WP_028153345.1|1590376_1591255_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	36.5	9.4e-45
WP_011084897.1|1591258_1592110_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011084898.1|1592122_1592482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497761.1|1593150_1593351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497760.1|1593694_1593898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084900.1|1594294_1594573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084901.1|1595305_1595692_+	ectoine synthase	NA	NA	NA	NA	NA
WP_162494198.1|1596230_1606169_+	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	27.5	2.0e-154
WP_026312933.1|1607791_1608475_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_018648598.1|1609012_1609279_+	DUF3551 domain-containing protein	NA	NA	NA	NA	NA
WP_011084907.1|1609726_1609957_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014497752.1|1610381_1610756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084909.1|1610752_1611073_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084910.1|1611085_1612210_+	DUF3800 domain-containing protein	NA	U5N3F3	Enterobacteria_phage	39.7	2.0e-71
WP_085967575.1|1612474_1613604_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084912.1|1613958_1614528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084913.1|1614573_1615104_+	cation transporter	NA	NA	NA	NA	NA
WP_011084914.1|1615398_1615605_-	cold-shock protein	NA	NA	NA	NA	NA
WP_011084916.1|1616861_1617380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161966513.1|1617908_1618463_+|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
>prophage 6
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	1628400	1658594	9106064	protease,integrase,tRNA,transposase	Trichoplusia_ni_ascovirus(20.0%)	27	1632461:1632476	1639973:1639988
WP_011084929.1|1628400_1629978_+|tRNA	class I tRNA ligase family protein	tRNA	NA	NA	NA	NA
WP_011084930.1|1629997_1631131_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_155256178.1|1631537_1631705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497735.1|1632059_1632680_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
1632461:1632476	attL	TCGCCAGCGCGAACCG	NA	NA	NA	NA
WP_014497734.1|1632679_1633900_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_097670033.1|1634110_1634419_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084934.1|1634922_1635738_+|protease	YopT-type cysteine protease domain-containing protein	protease	NA	NA	NA	NA
WP_014497731.1|1636328_1636766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084937.1|1636988_1637294_+	cytochrome P450	NA	NA	NA	NA	NA
WP_011084938.1|1637310_1638516_+	cytochrome P450	NA	NA	NA	NA	NA
WP_011084939.1|1638610_1639900_+	cytochrome P450	NA	NA	NA	NA	NA
WP_014497729.1|1639901_1640192_+	ferredoxin	NA	NA	NA	NA	NA
1639973:1639988	attR	TCGCCAGCGCGAACCG	NA	NA	NA	NA
WP_011084940.1|1640196_1641042_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	27.7	6.4e-14
WP_011084941.1|1641041_1642385_+	cytochrome P450	NA	S4VQU1	Pandoravirus	33.5	1.6e-11
WP_028144010.1|1642539_1643538_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_026312707.1|1643680_1645231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084944.1|1645227_1646130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497725.1|1647271_1647808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080588799.1|1648553_1648967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084951.1|1649870_1651088_+	acyltransferase	NA	NA	NA	NA	NA
WP_011084592.1|1651620_1653225_-|transposase	IS66-like element ISBj7 family transposase	transposase	A0A218MNE7	uncultured_virus	33.5	1.8e-65
WP_011084591.1|1653297_1653651_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_158516560.1|1653647_1653956_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_161170728.1|1654412_1654682_-	hypothetical protein	NA	A0A291AUP1	Sinorhizobium_phage	52.5	9.3e-12
WP_011084954.1|1654793_1655999_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	34.8	1.5e-48
WP_014497718.1|1657002_1657305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084514.1|1657529_1658594_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	2538610	2548197	9106064		Escherichia_phage(42.86%)	8	NA	NA
WP_011085709.1|2538610_2539342_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.6	3.9e-12
WP_011085710.1|2539325_2540030_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	3.8e-12
WP_038965772.1|2540191_2540872_-	aldolase	NA	A0A077SK32	Escherichia_phage	49.3	4.6e-47
WP_011085712.1|2540976_2541894_+	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	48.3	7.0e-67
WP_011085713.1|2541910_2542693_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_011085714.1|2542689_2543964_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.0	6.3e-74
WP_011085715.1|2544134_2545826_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.8	2.4e-12
WP_011085716.1|2545893_2548197_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.1	6.6e-13
>prophage 8
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	4573680	4583862	9106064	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_011087511.1|4573680_4575066_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	42.7	4.8e-19
WP_038967258.1|4575175_4575793_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.0	1.3e-27
WP_011087513.1|4576067_4576439_+	response regulator	NA	NA	NA	NA	NA
WP_028171844.1|4576442_4577210_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.6	1.8e-36
WP_011087515.1|4577398_4577761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087516.1|4577855_4579187_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.9	1.1e-97
WP_011087517.1|4579397_4580210_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.4	4.2e-55
WP_011087518.1|4580206_4580734_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_011087519.1|4580823_4581057_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
WP_028171841.1|4581223_4581976_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	4.0e-44
WP_011087521.1|4581997_4582837_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.1	1.1e-31
WP_011087522.1|4582833_4583862_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	41.2	1.0e-21
>prophage 9
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	5011929	5068670	9106064	protease,integrase,tRNA,transposase	Bradyrhizobium_phage(25.0%)	59	5037493:5037509	5073820:5073836
WP_011087894.1|5011929_5012421_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_011087895.1|5012451_5012802_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_011087896.1|5012798_5013539_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_038966374.1|5013794_5014757_-	transglycosylase SLT domain-containing protein	NA	A0A077KC92	Edwardsiella_phage	37.9	4.2e-06
WP_038966365.1|5014856_5015873_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011087899.1|5015943_5016144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027548121.1|5016188_5016431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087901.1|5016486_5017785_-	glycosidase	NA	NA	NA	NA	NA
WP_011087902.1|5017819_5020105_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_011087904.1|5021038_5021410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038966366.1|5021485_5021734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028171545.1|5021821_5022001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_133415023.1|5022179_5022503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087905.1|5022573_5023212_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_011087906.1|5023318_5023555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038966367.1|5023670_5024696_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_011087908.1|5024947_5025286_+	cytochrome c	NA	NA	NA	NA	NA
WP_011087909.1|5025365_5026787_+	MFS transporter	NA	NA	NA	NA	NA
WP_038966368.1|5026915_5027374_+	translation initiation factor 2	NA	NA	NA	NA	NA
WP_011087911.1|5027444_5029853_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.6	1.1e-175
WP_027548135.1|5030146_5030479_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	42.7	2.3e-12
WP_133415024.1|5030765_5031089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087913.1|5031284_5031623_-	phasin family protein	NA	NA	NA	NA	NA
WP_011087914.1|5032012_5033848_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.7	8.9e-29
WP_011087915.1|5034068_5034794_-	DnaJ domain-containing protein	NA	NA	NA	NA	NA
WP_038966370.1|5034913_5035906_+	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA	NA
WP_011087917.1|5035910_5036660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087918.1|5036779_5037640_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
5037493:5037509	attL	TCGCGATATCGACGGGC	NA	NA	NA	NA
WP_011087919.1|5037984_5038908_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011087920.1|5039186_5040038_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_011087921.1|5040121_5040562_-	DUF1489 domain-containing protein	NA	NA	NA	NA	NA
WP_011087922.1|5040604_5041591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_027548146.1|5041742_5041934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028171531.1|5042133_5042502_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_038966379.1|5042589_5043252_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_011087926.1|5043376_5044093_+	DUF599 domain-containing protein	NA	NA	NA	NA	NA
WP_051000307.1|5044777_5046184_+|integrase	site-specific integrase	integrase	A0A1X9SGU9	Bradyrhizobium_phage	31.9	1.8e-42
WP_162494118.1|5046419_5046812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038966380.1|5046778_5047216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087930.1|5047212_5047476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087931.1|5047604_5048570_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011087932.1|5049190_5049961_+	porin family protein	NA	NA	NA	NA	NA
WP_038966389.1|5050141_5051728_-	DUF3300 domain-containing protein	NA	NA	NA	NA	NA
WP_162494227.1|5051786_5052254_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
WP_162494119.1|5053250_5053568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087939.1|5054927_5055716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038966382.1|5055860_5056451_+	DNA ligase	NA	A0A1X9SH33	Bradyrhizobium_phage	62.6	7.2e-65
WP_038966383.1|5056914_5057127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038966384.1|5057227_5057623_-	response regulator	NA	NA	NA	NA	NA
WP_038966385.1|5057947_5058472_-	cytochrome P460 family protein	NA	NA	NA	NA	NA
WP_011087943.1|5058836_5059262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_063921629.1|5059886_5060270_-	response regulator	NA	NA	NA	NA	NA
WP_011087945.1|5060510_5061884_-|transposase	IS701-like element ISBj9 family transposase	transposase	NA	NA	NA	NA
WP_011087946.1|5061944_5062664_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	46.2	3.3e-19
WP_063921482.1|5063247_5063757_-	hypothetical protein	NA	A0A1X6WFW6	Pacmanvirus	49.7	1.3e-49
WP_038968086.1|5064396_5064861_-	fasciclin domain-containing protein	NA	NA	NA	NA	NA
WP_011085260.1|5065107_5065707_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_162494120.1|5065973_5066741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011087951.1|5067605_5068670_+|transposase	IS110-like element ISBj4 family transposase	transposase	NA	NA	NA	NA
5073820:5073836	attR	TCGCGATATCGACGGGC	NA	NA	NA	NA
>prophage 10
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	5098692	5106131	9106064	protease	uncultured_virus(33.33%)	8	NA	NA
WP_028171493.1|5098692_5099007_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	57.6	4.7e-23
WP_011087983.1|5099055_5100678_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	59.2	6.8e-174
WP_011087984.1|5100880_5101228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087986.1|5101820_5102279_+	Hsp20 family protein	NA	E3SM62	Prochlorococcus_phage	37.1	1.5e-17
WP_011087987.1|5102444_5103371_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	33.8	2.3e-33
WP_011087989.1|5103896_5104358_+	Hsp20 family protein	NA	A0A1B1IW69	uncultured_Mediterranean_phage	39.4	3.7e-24
WP_011087990.1|5104442_5104943_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_011087991.1|5105015_5106131_+|protease	trypsin-like serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.4	2.9e-22
>prophage 11
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	8294607	8327030	9106064	integrase,transposase	Klebsiella_phage(16.67%)	29	8285032:8285048	8299204:8299220
8285032:8285048	attL	TCATGGTGCTCGACGAC	NA	NA	NA	NA
WP_011090895.1|8294607_8295849_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	66.8	1.9e-160
WP_014498593.1|8295845_8297189_+	DUF1016 domain-containing protein	NA	Q9JMP5	Wolbachia_phage	55.5	6.2e-112
WP_011090897.1|8297190_8298444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090898.1|8298534_8301024_-	AAA family ATPase	NA	NA	NA	NA	NA
8299204:8299220	attR	GTCGTCGAGCACCATGA	NA	NA	NA	NA
WP_014498594.1|8301020_8301245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498595.1|8301334_8302111_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498596.1|8302297_8302852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090901.1|8302970_8304758_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011085265.1|8304798_8305908_+|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
WP_011090902.1|8305918_8306683_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.0	4.7e-24
WP_011088795.1|8307241_8308306_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009734588.1|8308563_8309148_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_011090904.1|8309412_8310021_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014498601.1|8310180_8310828_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_011090906.1|8310932_8311811_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011090907.1|8311807_8312656_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_026192141.1|8312761_8313292_+	VOC family protein	NA	NA	NA	NA	NA
WP_016846434.1|8313579_8313864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498603.1|8314327_8314681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090914.1|8317104_8318436_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_011090915.1|8318368_8319205_-	porin family protein	NA	NA	NA	NA	NA
WP_011090916.1|8319648_8320317_+	AAA family ATPase	NA	A2I303	Vibrio_virus	32.7	1.5e-10
WP_014498616.1|8320504_8321317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090918.1|8321321_8322185_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
WP_011090919.1|8322184_8323684_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	28.8	7.8e-15
WP_011084668.1|8323983_8324526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498652.1|8325495_8325762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090921.1|8325997_8326402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498651.1|8326574_8327030_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011360	Bradyrhizobium diazoefficiens USDA 110 chromosome, complete genome	9106064	8370123	8441329	9106064	transposase	Shigella_phage(22.22%)	50	NA	NA
WP_085967575.1|8370123_8371252_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011090972.1|8373019_8373256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090974.1|8375017_8375299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016847165.1|8376061_8376292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161170744.1|8376739_8377090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090978.1|8377597_8377999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011087945.1|8378210_8379584_+|transposase	IS701-like element ISBj9 family transposase	transposase	NA	NA	NA	NA
WP_016848068.1|8379816_8380386_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_063921586.1|8380582_8382136_+	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA	NA
WP_125459388.1|8382177_8382396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026312514.1|8383283_8384201_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_161170741.1|8385834_8386431_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011090985.1|8386439_8387381_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011090986.1|8387503_8387728_-	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_011090987.1|8387724_8388927_-	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_011090988.1|8388917_8389997_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_011090989.1|8389993_8390683_-	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_011090990.1|8390686_8392048_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_011090991.1|8392044_8392365_-	putative entry exclusion protein TrbK-alt	NA	NA	NA	NA	NA
WP_011090992.1|8392375_8393134_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_011090993.1|8393130_8395569_-	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
WP_026312513.1|8395576_8395852_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_011090995.1|8395851_8396193_-	TrbC/VIRB2 family protein	NA	NA	NA	NA	NA
WP_049801881.1|8396189_8397140_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_011091000.1|8398913_8399267_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	45.8	5.1e-18
WP_011084514.1|8399427_8400492_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_016847010.1|8400788_8401085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016847009.1|8401197_8402238_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.8	6.4e-24
WP_011091003.1|8402311_8404048_+	hypothetical protein	NA	G8DH78	Emiliania_huxleyi_virus	29.9	1.6e-16
WP_011091004.1|8404146_8404560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011091007.1|8409158_8410226_+	DNA primase	NA	NA	NA	NA	NA
WP_018646331.1|8410587_8411490_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011091010.1|8412213_8413143_+	DUF2493 domain-containing protein	NA	B0VK20	Azospirillum_phage	35.9	6.1e-10
WP_063921587.1|8413467_8413920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011091014.1|8415240_8415744_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_016842695.1|8415826_8416792_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016842696.1|8417034_8418510_-	coproporphyrinogen III oxidase family protein	NA	NA	NA	NA	NA
WP_018646329.1|8419828_8419984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011091019.1|8419980_8420259_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_063921588.1|8420255_8420831_-	maturase	NA	NA	NA	NA	NA
WP_011091022.1|8422420_8422717_-	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_014490241.1|8427005_8427257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011082837.1|8429888_8430212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026312719.1|8430433_8431498_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A0K1LM33	Caulobacter_phage	55.9	3.2e-103
WP_011082839.1|8431497_8433669_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0K1LMZ5	Caulobacter_phage	66.3	9.3e-227
WP_043900134.1|8434423_8435065_-	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	28.3	1.1e-13
WP_014490250.1|8437250_8437622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011082845.1|8437743_8438277_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_125459292.1|8439527_8439824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085967575.1|8440200_8441329_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
