The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015427	[Haemophilus] ducreyi strain VAN4, complete genome	1673048	560709	575753	1673048		Bacillus_phage(12.5%)	15	NA	NA
WP_010944992.1|560709_564306_+	exodeoxyribonuclease V subunit beta	NA	A7KV33	Bacillus_phage	21.5	1.0e-12
WP_010944993.1|564381_564939_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	46.1	3.8e-31
WP_041603472.1|565002_566340_-	membrane protein	NA	NA	NA	NA	NA
WP_010944996.1|566767_567220_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_064083187.1|567273_568494_+	IscS subfamily cysteine desulfurase	NA	A0A2K9L679	Tupanvirus	24.7	4.9e-15
WP_010944998.1|568541_568925_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	75.8	1.7e-51
WP_010944999.1|569058_569382_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	9.8e-24
WP_010945000.1|569390_569912_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010945001.1|569956_570589_+	DUF2625 family protein	NA	NA	NA	NA	NA
WP_064085185.1|570640_572494_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.8	2.8e-107
WP_010945003.1|572505_572847_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_041603474.1|572846_573041_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010945005.1|573079_573889_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_010945006.1|573901_575140_-	multifunctional CCA addition/repair protein	NA	S5MVS8	Sinorhizobium_phage	46.0	1.6e-82
WP_010945007.1|575243_575753_-	peptidyl-prolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	35.4	2.5e-13
>prophage 2
NZ_CP015427	[Haemophilus] ducreyi strain VAN4, complete genome	1673048	648701	655214	1673048		Staphylococcus_phage(50.0%)	7	NA	NA
WP_010945065.1|648701_649808_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.7	3.7e-46
WP_010945066.1|649822_650470_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	41.9	8.0e-41
WP_010945067.1|650525_651731_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.5	8.5e-105
WP_010945068.1|651840_652302_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	58.1	8.7e-42
WP_010945070.1|652389_652878_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010945071.1|652885_653821_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	35.8	4.1e-38
WP_041603676.1|653912_655214_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	32.6	2.0e-30
>prophage 3
NZ_CP015427	[Haemophilus] ducreyi strain VAN4, complete genome	1673048	1196716	1207298	1673048		uncultured_Caudovirales_phage(28.57%)	10	NA	NA
WP_010945590.1|1196716_1198009_-	purine permease	NA	Q9KX94	Enterobacteria_phage	28.4	1.5e-22
WP_064083124.1|1198086_1199925_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_041603561.1|1200011_1200563_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010945593.1|1200748_1201414_+	BAX inhibitor protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	54.8	1.8e-48
WP_010945594.1|1201475_1201811_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	56.8	1.0e-28
WP_010945595.1|1201881_1202787_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010945596.1|1202783_1203542_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	26.6	3.0e-15
WP_010945597.1|1203747_1204287_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.0	6.0e-26
WP_064083123.1|1204314_1206378_+	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	35.8	2.9e-44
WP_041603563.1|1206389_1207298_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.5	5.2e-22
>prophage 4
NZ_CP015427	[Haemophilus] ducreyi strain VAN4, complete genome	1673048	1276367	1291625	1673048		Enterobacteria_phage(14.29%)	11	NA	NA
WP_010944553.1|1276367_1278938_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	34.1	4.2e-125
WP_010944552.1|1279015_1280443_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010944551.1|1280571_1280859_-	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_010944550.1|1280960_1281872_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	48.1	1.1e-64
WP_010944547.1|1282236_1282911_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	47.7	3.2e-53
WP_064085154.1|1282903_1283326_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	37.0	4.7e-18
WP_010944545.1|1283325_1283955_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A218M2Y8	Acidovorax_phage	33.6	2.2e-11
WP_010944544.1|1284024_1285524_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	37.7	8.0e-52
WP_010944542.1|1285850_1286954_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_010944541.1|1286954_1288037_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010944540.1|1288148_1291625_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	37.1	3.5e-191
>prophage 5
NZ_CP015427	[Haemophilus] ducreyi strain VAN4, complete genome	1673048	1306229	1328770	1673048	head,tail	Mannheimia_phage(36.0%)	33	NA	NA
WP_010944524.1|1306229_1307228_-	hypothetical protein	NA	A0A125RND5	Pseudomonas_phage	30.9	2.9e-34
WP_010944523.1|1307227_1310587_-	tape measure protein	NA	A0A2D1GNK1	Pseudomonas_phage	30.4	1.0e-107
WP_010944522.1|1310601_1310856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010944521.1|1311032_1311452_-	hypothetical protein	NA	A0A2D1GNY5	Pseudomonas_phage	39.7	1.2e-21
WP_010944520.1|1311509_1312253_-	hypothetical protein	NA	A0A2D1GNQ7	Pseudomonas_phage	49.4	1.0e-60
WP_010944519.1|1312283_1312730_-	hypothetical protein	NA	A0A075CI80	Pseudomonas_phage	32.2	2.6e-14
WP_010944518.1|1312726_1313113_-	DUF1320 domain-containing protein	NA	A0A2D1GNP0	Pseudomonas_phage	44.5	7.9e-20
WP_010944517.1|1313115_1313403_-	hypothetical protein	NA	A0A0M3LPR6	Mannheimia_phage	70.0	1.9e-18
WP_010944516.1|1313449_1314373_-|tail	tail sheath protein	tail	B7SDP1	Haemophilus_phage	82.8	4.6e-143
WP_041603382.1|1314372_1315443_-	hypothetical protein	NA	B7SDN9	Haemophilus_phage	78.3	5.9e-150
WP_010944514.1|1315697_1316114_-	phage virion morphogenesis protein	NA	A0A0M3LSP9	Mannheimia_phage	76.6	5.3e-54
WP_010944513.1|1316246_1317557_-|head	head morphogenesis protein	head	B7SDN5	Haemophilus_phage	67.1	2.1e-165
WP_064085151.1|1317540_1319178_-	DUF935 domain-containing protein	NA	B7SDN1	Haemophilus_phage	79.3	1.3e-252
WP_010944510.1|1320916_1321417_-	DUF1804 family protein	NA	A0A0M3LQI8	Mannheimia_phage	90.4	8.5e-75
WP_010944509.1|1321424_1321679_-	hypothetical protein	NA	A0A0M3LP87	Mannheimia_phage	54.8	2.4e-17
WP_010944508.1|1321675_1321954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944507.1|1322002_1322392_-	DUF2681 domain-containing protein	NA	A0A0M3LP93	Mannheimia_phage	43.5	9.1e-16
WP_010944506.1|1322391_1322625_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	88.0	4.7e-28
WP_010944505.1|1322611_1322965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041603380.1|1322969_1323518_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	72.6	2.9e-76
WP_010944503.1|1323605_1324028_-	hypothetical protein	NA	F6MIJ8	Haemophilus_phage	67.6	1.9e-51
WP_010944502.1|1324156_1324366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944501.1|1324376_1324976_-	phage antirepressor Ant	NA	G9L6G1	Escherichia_phage	47.0	7.4e-25
WP_010944500.1|1325289_1325718_-	regulatory protein GemA	NA	F6MIJ6	Haemophilus_phage	65.0	1.5e-43
WP_041603379.1|1325701_1326268_-	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	73.4	4.5e-72
WP_050711635.1|1326325_1326595_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_010944497.1|1326604_1326808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944496.1|1326804_1327101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944495.1|1327119_1327299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064085207.1|1327302_1327521_-	ANR family transcriptional regulator	NA	A0A0M3LSH0	Mannheimia_phage	58.1	1.4e-05
WP_064085150.1|1327604_1328222_-	DUF3164 family protein	NA	A0A0M3LQ92	Mannheimia_phage	79.4	6.1e-91
WP_064083113.1|1328232_1328577_-	hypothetical protein	NA	A0A0M3LQH1	Mannheimia_phage	54.9	7.0e-20
WP_010944491.1|1328563_1328770_-	hypothetical protein	NA	F6MII8	Haemophilus_phage	47.4	8.5e-05
>prophage 6
NZ_CP015427	[Haemophilus] ducreyi strain VAN4, complete genome	1673048	1616274	1635306	1673048	head	Vibrio_phage(21.05%)	31	NA	NA
WP_010944187.1|1616274_1616703_-	hypothetical protein	NA	L7P7Y2	Pseudomonas_phage	40.5	3.7e-18
WP_010944186.1|1616748_1617489_-	hypothetical protein	NA	A0A2D1GNQ7	Pseudomonas_phage	50.6	1.6e-61
WP_155727103.1|1617478_1617778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064083079.1|1617671_1618103_-	DUF1834 family protein	NA	C9DGP5	Escherichia_phage	38.2	5.5e-22
WP_010944184.1|1618102_1618522_-	DUF1320 domain-containing protein	NA	A0A0C4UR02	Shigella_phage	36.0	8.8e-17
WP_010944183.1|1618521_1618902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944182.1|1618976_1619888_-|head	head protein	head	C9DGP2	Escherichia_phage	52.6	2.0e-82
WP_010944180.1|1621130_1621574_-	phage virion morphogenesis protein	NA	G9BWH2	Planktothrix_phage	29.8	3.8e-10
WP_064085144.1|1623035_1624640_-	DUF935 domain-containing protein	NA	A0A0C4UQR8	Shigella_phage	49.7	3.9e-137
WP_088591959.1|1624643_1626206_-	hypothetical protein	NA	A0A2I7S9C5	Vibrio_phage	61.5	1.6e-159
WP_010944177.1|1626202_1626772_-	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	46.4	5.9e-40
WP_041603330.1|1626794_1627094_-	hypothetical protein	NA	A0A0C4UR00	Shigella_phage	54.1	1.2e-20
WP_010944175.1|1627097_1627433_-	DUF2730 domain-containing protein	NA	NA	NA	NA	NA
WP_010944174.1|1627429_1627660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944172.1|1627779_1628064_-	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
WP_010944171.1|1628066_1628297_-	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	74.6	9.4e-21
WP_064083075.1|1628529_1629081_-	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	69.3	3.0e-73
WP_041603328.1|1629157_1629493_-	transcriptional regulator	NA	A0A2I7S9J0	Vibrio_phage	39.1	8.6e-07
WP_064083074.1|1629489_1629954_-	regulatory protein GemA	NA	Q6QIE7	Burkholderia_phage	30.9	7.3e-12
WP_064083073.1|1629931_1630300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944164.1|1630281_1630752_-	hypothetical protein	NA	A0A2H4JFV8	uncultured_Caudovirales_phage	43.2	1.1e-26
WP_010944163.1|1630829_1631105_-	hypothetical protein	NA	A0A2P0P8L3	Salmonella_phage	49.3	1.6e-11
WP_064083071.1|1631104_1631842_-	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	35.0	9.7e-27
WP_010944161.1|1631843_1632137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944160.1|1632145_1632481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944159.1|1632477_1632681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010944158.1|1632683_1632902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041603325.1|1633296_1633515_-	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_064085143.1|1633525_1634143_-	DUF3164 family protein	NA	A4JWM8	Burkholderia_virus	56.9	1.8e-66
WP_010944153.1|1634155_1634389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064085142.1|1634388_1635306_-	AAA family ATPase	NA	A0A2I7S9C3	Vibrio_phage	44.3	1.2e-58
