assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	1	2545684-2545839	1	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	GGGGGCACCTCCCAGCGGTAGCTGGGGGA	29	1	1	2545713-2545744	NZ_CP015726.1_4681156-4681187	NA	2	2	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA,NA|224aa|down_0|NZ_CP015726.1_2546173_2546845_-,NA|63aa|down_1|NZ_CP015726.1_2546892_2547081_+,NA|72aa|down_9|NZ_CP015726.1_2555071_2555287_-	NA|358aa|up_9|NZ_CP015726.1_2533620_2534694_+	pfam09754, PAC2, PAC2 family	NA|410aa|up_8|NZ_CP015726.1_2534966_2536196_-	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional	NA|296aa|up_7|NZ_CP015726.1_2536314_2537202_-	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|197aa|up_6|NZ_CP015726.1_2537165_2537756_-	TIGR03847, TIGR03847, conserved hypothetical protein	NA|232aa|up_5|NZ_CP015726.1_2537903_2538599_-	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family	NA|331aa|up_4|NZ_CP015726.1_2538697_2539690_+	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|266aa|up_3|NZ_CP015726.1_2539744_2540542_-	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|350aa|up_2|NZ_CP015726.1_2540785_2541835_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|327aa|up_1|NZ_CP015726.1_2542024_2543005_+	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|871aa|up_0|NZ_CP015726.1_2543001_2545614_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|224aa|down_0|NZ_CP015726.1_2546173_2546845_-	NA	NA|63aa|down_1|NZ_CP015726.1_2546892_2547081_+	NA	NA|195aa|down_2|NZ_CP015726.1_2547442_2548027_+	pfam01391, Collagen, Collagen triple helix repeat (20 copies)	NA|447aa|down_3|NZ_CP015726.1_2548435_2549776_-	PRK07906, PRK07906, hypothetical protein; Provisional	NA|276aa|down_4|NZ_CP015726.1_2550194_2551022_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|325aa|down_5|NZ_CP015726.1_2551182_2552157_+	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members	NA|133aa|down_6|NZ_CP015726.1_2552273_2552672_+	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|386aa|down_7|NZ_CP015726.1_2552668_2553826_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|293aa|down_8|NZ_CP015726.1_2553822_2554701_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|72aa|down_9|NZ_CP015726.1_2555071_2555287_-	NA
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	2	2545932-2546017	2	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	GGGGGCACCTCCCAGCGGTAGCTGGGGGA	29	1	1	2545961-2545988	NZ_CP015726.1_8052334-8052307	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA,NA|224aa|down_0|NZ_CP015726.1_2546173_2546845_-,NA|63aa|down_1|NZ_CP015726.1_2546892_2547081_+,NA|72aa|down_9|NZ_CP015726.1_2555071_2555287_-	NA|358aa|up_9|NZ_CP015726.1_2533620_2534694_+	pfam09754, PAC2, PAC2 family	NA|410aa|up_8|NZ_CP015726.1_2534966_2536196_-	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional	NA|296aa|up_7|NZ_CP015726.1_2536314_2537202_-	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein	NA|197aa|up_6|NZ_CP015726.1_2537165_2537756_-	TIGR03847, TIGR03847, conserved hypothetical protein	NA|232aa|up_5|NZ_CP015726.1_2537903_2538599_-	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family	NA|331aa|up_4|NZ_CP015726.1_2538697_2539690_+	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily	NA|266aa|up_3|NZ_CP015726.1_2539744_2540542_-	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|350aa|up_2|NZ_CP015726.1_2540785_2541835_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|327aa|up_1|NZ_CP015726.1_2542024_2543005_+	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B,  AKR12C families of aldo-keto reductase (AKR)	NA|871aa|up_0|NZ_CP015726.1_2543001_2545614_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|224aa|down_0|NZ_CP015726.1_2546173_2546845_-	NA	NA|63aa|down_1|NZ_CP015726.1_2546892_2547081_+	NA	NA|195aa|down_2|NZ_CP015726.1_2547442_2548027_+	pfam01391, Collagen, Collagen triple helix repeat (20 copies)	NA|447aa|down_3|NZ_CP015726.1_2548435_2549776_-	PRK07906, PRK07906, hypothetical protein; Provisional	NA|276aa|down_4|NZ_CP015726.1_2550194_2551022_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|325aa|down_5|NZ_CP015726.1_2551182_2552157_+	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members	NA|133aa|down_6|NZ_CP015726.1_2552273_2552672_+	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|386aa|down_7|NZ_CP015726.1_2552668_2553826_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|293aa|down_8|NZ_CP015726.1_2553822_2554701_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|72aa|down_9|NZ_CP015726.1_2555071_2555287_-	NA
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	3	3368275-3368384	3	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	GCGCTGATCGAAGGCTTGCGGCCCTT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|78aa|up_9|NZ_CP015726.1_3359494_3359728_+,NA|99aa|up_7|NZ_CP015726.1_3360458_3360755_-,NA|119aa|up_6|NZ_CP015726.1_3360771_3361128_-,NA|341aa|up_4|NZ_CP015726.1_3362174_3363197_-,NA|67aa|up_3|NZ_CP015726.1_3363213_3363414_-,NA|166aa|up_2|NZ_CP015726.1_3363423_3363921_-,NA|152aa|up_1|NZ_CP015726.1_3363917_3364373_-,NA|148aa|down_0|NZ_CP015726.1_3370166_3370610_-,NA|166aa|down_1|NZ_CP015726.1_3370622_3371120_-,NA|329aa|down_2|NZ_CP015726.1_3371129_3372116_-,NA|69aa|down_3|NZ_CP015726.1_3372118_3372325_-,NA|155aa|down_4|NZ_CP015726.1_3372382_3372847_-,NA|126aa|down_6|NZ_CP015726.1_3373417_3373795_-,NA|137aa|down_7|NZ_CP015726.1_3373809_3374220_-	NA|78aa|up_9|NZ_CP015726.1_3359494_3359728_+	NA	NA|227aa|up_8|NZ_CP015726.1_3359781_3360462_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|99aa|up_7|NZ_CP015726.1_3360458_3360755_-	NA	NA|119aa|up_6|NZ_CP015726.1_3360771_3361128_-	NA	NA|310aa|up_5|NZ_CP015726.1_3361133_3362063_-	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase	NA|341aa|up_4|NZ_CP015726.1_3362174_3363197_-	NA	NA|67aa|up_3|NZ_CP015726.1_3363213_3363414_-	NA	NA|166aa|up_2|NZ_CP015726.1_3363423_3363921_-	NA	NA|152aa|up_1|NZ_CP015726.1_3363917_3364373_-	NA	NA|766aa|up_0|NZ_CP015726.1_3364387_3366685_-	pfam02018, CBM_4_9, Carbohydrate binding domain	NA|148aa|down_0|NZ_CP015726.1_3370166_3370610_-	NA	NA|166aa|down_1|NZ_CP015726.1_3370622_3371120_-	NA	NA|329aa|down_2|NZ_CP015726.1_3371129_3372116_-	NA	NA|69aa|down_3|NZ_CP015726.1_3372118_3372325_-	NA	NA|155aa|down_4|NZ_CP015726.1_3372382_3372847_-	NA	NA|186aa|down_5|NZ_CP015726.1_3372849_3373407_-	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|126aa|down_6|NZ_CP015726.1_3373417_3373795_-	NA	NA|137aa|down_7|NZ_CP015726.1_3373809_3374220_-	NA	NA|492aa|down_8|NZ_CP015726.1_3374278_3375754_-	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|318aa|down_9|NZ_CP015726.1_3375753_3376707_-	pfam04586, Peptidase_S78, Caudovirus prohead serine protease
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	4	3775010-3775113	4	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	TGCTCTGCCAATTGAGCTACAGGGGA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|97aa|up_6|NZ_CP015726.1_3768142_3768433_-,NA|57aa|up_4|NZ_CP015726.1_3769817_3769988_-,NA|176aa|up_3|NZ_CP015726.1_3770252_3770780_+,NA|258aa|up_2|NZ_CP015726.1_3770786_3771560_+,NA|91aa|down_0|NZ_CP015726.1_3775317_3775590_+	NA|209aa|up_9|NZ_CP015726.1_3764808_3765435_-	cd16403, ParB_N_like_MT, ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase	NA|289aa|up_8|NZ_CP015726.1_3765629_3766496_+	smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases	NA|306aa|up_7|NZ_CP015726.1_3767214_3768132_-	COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]	NA|97aa|up_6|NZ_CP015726.1_3768142_3768433_-	NA	NA|380aa|up_5|NZ_CP015726.1_3768513_3769653_-	cd16393, SPO0J_N, Thermus thermophilus stage 0 sporulation protein J-like N-terminal domain, ParB family member	NA|57aa|up_4|NZ_CP015726.1_3769817_3769988_-	NA	NA|176aa|up_3|NZ_CP015726.1_3770252_3770780_+	NA	NA|258aa|up_2|NZ_CP015726.1_3770786_3771560_+	NA	NA|320aa|up_1|NZ_CP015726.1_3771548_3772508_-	pfam07508, Recombinase, Recombinase	NA|529aa|up_0|NZ_CP015726.1_3772995_3774582_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|91aa|down_0|NZ_CP015726.1_3775317_3775590_+	NA	NA|484aa|down_1|NZ_CP015726.1_3775615_3777067_+	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases	NA|439aa|down_2|NZ_CP015726.1_3777073_3778390_-	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	NA|644aa|down_3|NZ_CP015726.1_3778773_3780705_-	PRK05667, dnaG, DNA primase; Validated	NA|432aa|down_4|NZ_CP015726.1_3780775_3782071_-	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	NA|461aa|down_5|NZ_CP015726.1_3782305_3783688_-	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|260aa|down_6|NZ_CP015726.1_3783684_3784464_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|350aa|down_7|NZ_CP015726.1_3785053_3786103_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|204aa|down_8|NZ_CP015726.1_3786224_3786836_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|228aa|down_9|NZ_CP015726.1_3786910_3787594_+	COG2949, SanA, Uncharacterized membrane protein [Function unknown]
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	5	3985541-3985660	5	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	CCCCAGCAGCCGGGTCCGTACGGACAG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA,NA|65aa|down_4|NZ_CP015726.1_3992510_3992705_-	NA|401aa|up_9|NZ_CP015726.1_3970991_3972194_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|716aa|up_8|NZ_CP015726.1_3972190_3974338_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|240aa|up_7|NZ_CP015726.1_3974438_3975158_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|314aa|up_6|NZ_CP015726.1_3975164_3976106_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|340aa|up_5|NZ_CP015726.1_3976258_3977278_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|138aa|up_4|NZ_CP015726.1_3977596_3978010_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|118aa|up_3|NZ_CP015726.1_3978099_3978453_-	pfam14017, DUF4233, Protein of unknown function (DUF4233)	NA|507aa|up_2|NZ_CP015726.1_3978454_3979975_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|878aa|up_1|NZ_CP015726.1_3981697_3984331_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|329aa|up_0|NZ_CP015726.1_3984413_3985400_+	pfam09770, PAT1, Topoisomerase II-associated protein PAT1	NA|429aa|down_0|NZ_CP015726.1_3987457_3988744_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|219aa|down_1|NZ_CP015726.1_3988927_3989584_-	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|201aa|down_2|NZ_CP015726.1_3989645_3990248_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|484aa|down_3|NZ_CP015726.1_3990549_3992001_-	PRK01490, tig, trigger factor; Provisional	NA|65aa|down_4|NZ_CP015726.1_3992510_3992705_-	NA	NA|394aa|down_5|NZ_CP015726.1_3993302_3994484_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|810aa|down_6|NZ_CP015726.1_3994565_3996995_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|271aa|down_7|NZ_CP015726.1_3997072_3997885_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|382aa|down_8|NZ_CP015726.1_3998012_3999158_-	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|270aa|down_9|NZ_CP015726.1_3999495_4000305_-	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	6	4036665-4036747	6	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	ACGGCTCTTGGCGCCGTACGCGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|82aa|up_5|NZ_CP015726.1_4024697_4024943_-,NA|96aa|up_3|NZ_CP015726.1_4029574_4029862_-,NA|440aa|down_6|NZ_CP015726.1_4044805_4046125_+	NA|384aa|up_9|NZ_CP015726.1_4017673_4018825_+	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1	NA|858aa|up_8|NZ_CP015726.1_4018909_4021483_+	TIGR02412, Aminopeptidase_N, aminopeptidase N, Streptomyces lividans type	NA|599aa|up_7|NZ_CP015726.1_4021679_4023476_-	sd00010, SLR, Sel1-like repeat	NA|325aa|up_6|NZ_CP015726.1_4023494_4024469_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|82aa|up_5|NZ_CP015726.1_4024697_4024943_-	NA	NA|576aa|up_4|NZ_CP015726.1_4024992_4026720_-	COG3669, COG3669, Alpha-L-fucosidase [Carbohydrate transport and metabolism]	NA|96aa|up_3|NZ_CP015726.1_4029574_4029862_-	NA	NA|1000aa|up_2|NZ_CP015726.1_4030285_4033285_+	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|180aa|up_1|NZ_CP015726.1_4033396_4033936_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|363aa|up_0|NZ_CP015726.1_4034346_4035435_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|409aa|down_0|NZ_CP015726.1_4037657_4038884_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|443aa|down_1|NZ_CP015726.1_4038996_4040325_+	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|318aa|down_2|NZ_CP015726.1_4040336_4041290_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|302aa|down_3|NZ_CP015726.1_4041305_4042211_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|421aa|down_4|NZ_CP015726.1_4042207_4043470_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|377aa|down_5|NZ_CP015726.1_4043460_4044591_+	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]	NA|440aa|down_6|NZ_CP015726.1_4044805_4046125_+	NA	NA|339aa|down_7|NZ_CP015726.1_4046205_4047222_+	cd13690, PBP2_GluB, Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold	NA|449aa|down_8|NZ_CP015726.1_4047400_4048747_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|838aa|down_9|NZ_CP015726.1_4048739_4051253_+	pfam16918, PknG_TPR, Protein kinase G tetratricopeptide repeat
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	7	5255008-5255099	7	CRISPRCasFinder	no	csa3	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Type I-A	CGAGTTCTGGGGTGGTGGGCGGGGCG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|214aa|up_5|NZ_CP015726.1_5250406_5251048_+,NA|65aa|up_1|NZ_CP015726.1_5252664_5252859_-,NA|112aa|down_5|NZ_CP015726.1_5261484_5261820_-	NA|311aa|up_9|NZ_CP015726.1_5242664_5243597_-	TIGR03448, mycothiol_MshD, mycothiol synthase	NA|608aa|up_8|NZ_CP015726.1_5243774_5245598_+	cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain	NA|392aa|up_7|NZ_CP015726.1_5245659_5246835_-	TIGR01426, Glycosyl_transferase, glycosyltransferase, MGT family	NA|841aa|up_6|NZ_CP015726.1_5247421_5249944_-	CHL00095, clpC, Clp protease ATP binding subunit	NA|214aa|up_5|NZ_CP015726.1_5250406_5251048_+	NA	NA|112aa|up_4|NZ_CP015726.1_5251053_5251389_-	pfam11774, Lsr2, Lsr2	NA|174aa|up_3|NZ_CP015726.1_5251610_5252132_-	PRK07922, PRK07922, amino-acid N-acetyltransferase	NA|132aa|up_2|NZ_CP015726.1_5252154_5252550_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|65aa|up_1|NZ_CP015726.1_5252664_5252859_-	NA	NA|266aa|up_0|NZ_CP015726.1_5254172_5254970_-	PRK13318, PRK13318, type III pantothenate kinase	NA|351aa|down_0|NZ_CP015726.1_5255132_5256185_-	PRK07896, PRK07896, carboxylating nicotinate-nucleotide diphosphorylase	NA|591aa|down_1|NZ_CP015726.1_5256181_5257954_-	PRK07804, PRK07804, L-aspartate oxidase; Provisional	NA|332aa|down_2|NZ_CP015726.1_5258007_5259003_-	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|312aa|down_3|NZ_CP015726.1_5258999_5259935_-	COG5495, COG5495, Uncharacterized conserved protein [Function unknown]	NA|391aa|down_4|NZ_CP015726.1_5260178_5261351_+	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]	NA|112aa|down_5|NZ_CP015726.1_5261484_5261820_-	NA	csa3|364aa|down_6|NZ_CP015726.1_5261919_5263011_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|233aa|down_7|NZ_CP015726.1_5263022_5263721_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|399aa|down_8|NZ_CP015726.1_5263802_5264999_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|337aa|down_9|NZ_CP015726.1_5265109_5266120_+	COG1565, COG1565, Uncharacterized conserved protein [Function unknown]
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	8	6033316-6033391	8	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	GTCACCGATACCGCGCCGTCATCG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|86aa|up_9|NZ_CP015726.1_6022158_6022416_-,NA|102aa|up_8|NZ_CP015726.1_6022660_6022966_-,NA|492aa|down_0|NZ_CP015726.1_6033428_6034904_-,NA|521aa|down_8|NZ_CP015726.1_6058079_6059642_-	NA|86aa|up_9|NZ_CP015726.1_6022158_6022416_-	NA	NA|102aa|up_8|NZ_CP015726.1_6022660_6022966_-	NA	NA|67aa|up_7|NZ_CP015726.1_6023059_6023260_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|284aa|up_6|NZ_CP015726.1_6023252_6024104_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|211aa|up_5|NZ_CP015726.1_6024321_6024954_+	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|1047aa|up_4|NZ_CP015726.1_6024961_6028102_-	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|363aa|up_3|NZ_CP015726.1_6028254_6029343_+	pfam12102, DUF3578, Domain of unknown function (DUF3578)	NA|525aa|up_2|NZ_CP015726.1_6029388_6030963_-	pfam13367, PrsW-protease, Protease prsW family	NA|270aa|up_1|NZ_CP015726.1_6031027_6031837_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|402aa|up_0|NZ_CP015726.1_6031949_6033155_-	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase	NA|492aa|down_0|NZ_CP015726.1_6033428_6034904_-	NA	NA|696aa|down_1|NZ_CP015726.1_6035808_6037896_+	pfam00733, Asn_synthase, Asparagine synthase	NA|266aa|down_2|NZ_CP015726.1_6042386_6043184_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|452aa|down_3|NZ_CP015726.1_6043503_6044859_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|641aa|down_4|NZ_CP015726.1_6045094_6047017_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|436aa|down_5|NZ_CP015726.1_6047064_6048372_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|184aa|down_6|NZ_CP015726.1_6048518_6049070_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|473aa|down_7|NZ_CP015726.1_6056597_6058016_-	pfam12846, AAA_10, AAA-like domain	NA|521aa|down_8|NZ_CP015726.1_6058079_6059642_-	NA	NA|445aa|down_9|NZ_CP015726.1_6059638_6060973_-	PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	9	6390860-6391062	1	PILER-CR	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	GGCTGGGCTGCGACCCCGCCCCCTCCCGCCG	31	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|122aa|up_8|NZ_CP015726.1_6381972_6382338_-,NA|289aa|up_7|NZ_CP015726.1_6382372_6383239_-,NA|122aa|down_0|NZ_CP015726.1_6391081_6391447_-,NA|209aa|down_3|NZ_CP015726.1_6393824_6394451_+,NA|232aa|down_9|NZ_CP015726.1_6397536_6398232_-	NA|766aa|up_9|NZ_CP015726.1_6379745_6382043_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|122aa|up_8|NZ_CP015726.1_6381972_6382338_-	NA	NA|289aa|up_7|NZ_CP015726.1_6382372_6383239_-	NA	NA|148aa|up_6|NZ_CP015726.1_6383522_6383966_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|168aa|up_5|NZ_CP015726.1_6384007_6384511_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|453aa|up_4|NZ_CP015726.1_6384687_6386046_+	PRK14318, glmM, phosphoglucosamine mutase; Provisional	NA|307aa|up_3|NZ_CP015726.1_6386190_6387111_-	TIGR00271, Uncharacterized_protein_MJ0678, uncharacterized hydrophobic domain	NA|326aa|up_2|NZ_CP015726.1_6387123_6388101_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|616aa|up_1|NZ_CP015726.1_6388399_6390247_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|123aa|up_0|NZ_CP015726.1_6390243_6390612_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|122aa|down_0|NZ_CP015726.1_6391081_6391447_-	NA	NA|413aa|down_1|NZ_CP015726.1_6391993_6393232_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|139aa|down_2|NZ_CP015726.1_6393408_6393825_+	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|209aa|down_3|NZ_CP015726.1_6393824_6394451_+	NA	NA|293aa|down_4|NZ_CP015726.1_6394479_6395358_+	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|289aa|down_5|NZ_CP015726.1_6395312_6396179_+	cd05151, ChoK-like, Choline Kinase and similar proteins	NA|114aa|down_6|NZ_CP015726.1_6396204_6396546_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|174aa|down_7|NZ_CP015726.1_6396581_6397103_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|119aa|down_8|NZ_CP015726.1_6397170_6397527_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|232aa|down_9|NZ_CP015726.1_6397536_6398232_-	NA
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	10	7385248-7385413	9	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	CGGGGCTGCGCCCTCGGCCTCAC	23	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|184aa|up_0|NZ_CP015726.1_7384669_7385221_+,NA|131aa|down_7|NZ_CP015726.1_7393857_7394250_+,NA|106aa|down_9|NZ_CP015726.1_7395523_7395841_+	NA|82aa|up_9|NZ_CP015726.1_7375794_7376040_+	PRK07874, PRK07874, ATP synthase F0 subunit C	NA|188aa|up_8|NZ_CP015726.1_7376076_7376640_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|272aa|up_7|NZ_CP015726.1_7376636_7377452_+	PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional	NA|524aa|up_6|NZ_CP015726.1_7377541_7379113_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|305aa|up_5|NZ_CP015726.1_7379115_7380030_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|481aa|up_4|NZ_CP015726.1_7380034_7381477_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|126aa|up_3|NZ_CP015726.1_7381588_7381966_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|150aa|up_2|NZ_CP015726.1_7382087_7382537_+	pfam10739, DUF2550, Protein of unknown function (DUF2550)	NA|212aa|up_1|NZ_CP015726.1_7382562_7383198_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|184aa|up_0|NZ_CP015726.1_7384669_7385221_+	NA	NA|191aa|down_0|NZ_CP015726.1_7385788_7386361_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|252aa|down_1|NZ_CP015726.1_7386384_7387140_-	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein	NA|261aa|down_2|NZ_CP015726.1_7387157_7387940_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|283aa|down_3|NZ_CP015726.1_7388744_7389593_+	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|108aa|down_4|NZ_CP015726.1_7389751_7390075_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|855aa|down_5|NZ_CP015726.1_7390250_7392815_+	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|224aa|down_6|NZ_CP015726.1_7392983_7393655_-	PRK03298, PRK03298, endonuclease NucS	NA|131aa|down_7|NZ_CP015726.1_7393857_7394250_+	NA	NA|344aa|down_8|NZ_CP015726.1_7394287_7395319_-	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|106aa|down_9|NZ_CP015726.1_7395523_7395841_+	NA
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	11	8236705-8236778	10	CRISPRCasFinder	no	WYL	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Unclear	GCCAGGCCGAGCTGATCGCCGAC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|287aa|up_8|NZ_CP015726.1_8229183_8230044_-,NA|59aa|up_6|NZ_CP015726.1_8231010_8231187_-,NA|171aa|up_0|NZ_CP015726.1_8235539_8236052_+,NA|125aa|down_0|NZ_CP015726.1_8238585_8238960_+	NA|158aa|up_9|NZ_CP015726.1_8228615_8229089_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|287aa|up_8|NZ_CP015726.1_8229183_8230044_-	NA	NA|277aa|up_7|NZ_CP015726.1_8230092_8230923_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|59aa|up_6|NZ_CP015726.1_8231010_8231187_-	NA	NA|219aa|up_5|NZ_CP015726.1_8231183_8231840_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|142aa|up_4|NZ_CP015726.1_8232008_8232434_+	cd00607, RNase_Sa, RNase_Sa	NA|322aa|up_3|NZ_CP015726.1_8232651_8233617_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|218aa|up_2|NZ_CP015726.1_8233799_8234453_+	cd00452, KDPG_aldolase, KDPG and KHG aldolase	NA|283aa|up_1|NZ_CP015726.1_8234598_8235447_+	cd01069, PBP2_PheC, Cyclohexadienyl dehydratase, a member of the type 2 periplasmic binding fold protein superfamily	NA|171aa|up_0|NZ_CP015726.1_8235539_8236052_+	NA	NA|125aa|down_0|NZ_CP015726.1_8238585_8238960_+	NA	NA|404aa|down_1|NZ_CP015726.1_8239109_8240321_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|126aa|down_2|NZ_CP015726.1_8240381_8240759_+	cd01282, HTH_MerR-like_sg3, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|406aa|down_3|NZ_CP015726.1_8240792_8242010_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|653aa|down_4|NZ_CP015726.1_8242114_8244073_-	COG3934, COG3934, Endo-beta-mannanase [Carbohydrate transport and metabolism]	NA|582aa|down_5|NZ_CP015726.1_8244364_8246110_+	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold	NA|328aa|down_6|NZ_CP015726.1_8246131_8247115_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|297aa|down_7|NZ_CP015726.1_8247111_8248002_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|340aa|down_8|NZ_CP015726.1_8247998_8249018_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|240aa|down_9|NZ_CP015726.1_8250125_8250845_+	COG2188, PhnF, Transcriptional regulators [Transcription]
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	12	8685078-8685216	11	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	GGGTGCCGGGTGGGGGTGGGCGCGGCCCCGGCTCCCTCCC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA,NA|288aa|down_2|NZ_CP015726.1_8689980_8690844_-	NA|405aa|up_9|NZ_CP015726.1_8665569_8666784_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|731aa|up_8|NZ_CP015726.1_8667775_8669968_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|287aa|up_7|NZ_CP015726.1_8670071_8670932_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|251aa|up_6|NZ_CP015726.1_8670943_8671696_-	cd04778, HTH_MerR-like_sg2, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|1242aa|up_5|NZ_CP015726.1_8671936_8675662_+	PRK09525, lacZ, beta-galactosidase	NA|291aa|up_4|NZ_CP015726.1_8675741_8676614_+	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|495aa|up_3|NZ_CP015726.1_8676644_8678129_-	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|652aa|up_2|NZ_CP015726.1_8678343_8680299_+	PRK05371, PRK05371, x-prolyl-dipeptidyl aminopeptidase; Provisional	NA|444aa|up_1|NZ_CP015726.1_8680383_8681715_+	cd06242, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|602aa|up_0|NZ_CP015726.1_8681814_8683620_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|546aa|down_0|NZ_CP015726.1_8685264_8686902_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|798aa|down_1|NZ_CP015726.1_8687135_8689529_-	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|288aa|down_2|NZ_CP015726.1_8689980_8690844_-	NA	NA|253aa|down_3|NZ_CP015726.1_8690924_8691683_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|191aa|down_4|NZ_CP015726.1_8691928_8692501_+	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|205aa|down_5|NZ_CP015726.1_8692433_8693048_-	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase	NA|329aa|down_6|NZ_CP015726.1_8694124_8695111_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|639aa|down_7|NZ_CP015726.1_8695381_8697298_+	pfam01066, CDP-OH_P_transf, CDP-alcohol phosphatidyltransferase	NA|246aa|down_8|NZ_CP015726.1_8697294_8698032_+	cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline	NA|358aa|down_9|NZ_CP015726.1_8698019_8699093_+	cd08174, G1PDH-like, Glycerol-1-phosphate dehydrogenase-like
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	13	8804526-8804675	12	CRISPRCasFinder	no	WYL	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Unclear	CAGCCCCTCCGGCGTTTGAGGAGCGGGGTCCGGGGCGGAGCCTCGG	46	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|366aa|up_8|NZ_CP015726.1_8792344_8793442_+,NA|677aa|down_7|NZ_CP015726.1_8810986_8813017_+,NA|133aa|down_8|NZ_CP015726.1_8813269_8813668_+	NA|211aa|up_9|NZ_CP015726.1_8791616_8792249_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|366aa|up_8|NZ_CP015726.1_8792344_8793442_+	NA	NA|144aa|up_7|NZ_CP015726.1_8795315_8795747_+	NF033179, TnsA_like_Actin, TnsA-like heteromeric transposase endonuclease subunit	NA|491aa|up_6|NZ_CP015726.1_8795860_8797333_-	PRK08274, PRK08274, FAD-dependent tricarballylate dehydrogenase TcuA	NA|302aa|up_5|NZ_CP015726.1_8797573_8798479_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|343aa|up_4|NZ_CP015726.1_8799146_8800175_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|386aa|up_3|NZ_CP015726.1_8800171_8801329_+	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA|313aa|up_2|NZ_CP015726.1_8801491_8802430_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|404aa|up_1|NZ_CP015726.1_8802426_8803638_+	PRK03244, argD, acetylornithine transaminase	NA|166aa|up_0|NZ_CP015726.1_8803732_8804230_+	PRK03341, PRK03341, arginine repressor; Provisional	NA|330aa|down_0|NZ_CP015726.1_8804698_8805688_-	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]	NA|197aa|down_1|NZ_CP015726.1_8805759_8806350_-	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|129aa|down_2|NZ_CP015726.1_8806401_8806788_+	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|248aa|down_3|NZ_CP015726.1_8806809_8807553_-	pfam02424, ApbE, ApbE family	NA|150aa|down_4|NZ_CP015726.1_8807606_8808056_-	smart00900, FMN_bind, This conserved region includes the FMN-binding site of the NqrC protein as well as the NosR and NirI regulatory proteins	NA|457aa|down_5|NZ_CP015726.1_8808070_8809441_-	cd06198, FNR_like_3, NAD(P) binding domain of  ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain	NA|414aa|down_6|NZ_CP015726.1_8809705_8810947_+	PRK07206, PRK07206, hypothetical protein; Provisional	NA|677aa|down_7|NZ_CP015726.1_8810986_8813017_+	NA	NA|133aa|down_8|NZ_CP015726.1_8813269_8813668_+	NA	NA|389aa|down_9|NZ_CP015726.1_8813648_8814815_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	14	9123102-9123914	13,1,2	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas6,cas7,cas5,cas3,cas1,cas2	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Unclear	GTTGCGACCCCTCCAGGGGTGATGACGAC,ACCCCTCCAGGGGTGATGACGAC,GTTGCGACCCCTCCAGGGGTGATGACGAC	29,23,29	0	0	NA	NA	NA:NA:NA	12,12,9	12	Unclear	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|221aa|up_6|NZ_CP015726.1_9117374_9118037_-,NA|164aa|up_3|NZ_CP015726.1_9119549_9120041_-,NA|537aa|up_1|NZ_CP015726.1_9120817_9122428_+,NA|483aa|down_1|NZ_CP015726.1_9124946_9126395_+,NA|358aa|down_8|NZ_CP015726.1_9134637_9135711_-,NA|181aa|down_9|NZ_CP015726.1_9135834_9136377_-	NA|319aa|up_9|NZ_CP015726.1_9113671_9114628_-	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein	NA|470aa|up_8|NZ_CP015726.1_9114711_9116121_-	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion]	NA|344aa|up_7|NZ_CP015726.1_9116117_9117149_-	TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis protein A, archaeal	NA|221aa|up_6|NZ_CP015726.1_9117374_9118037_-	NA	NA|265aa|up_5|NZ_CP015726.1_9118033_9118828_-	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|163aa|up_4|NZ_CP015726.1_9118959_9119448_-	cd06170, LuxR_C_like, C-terminal DNA-binding domain of LuxR-like proteins	NA|164aa|up_3|NZ_CP015726.1_9119549_9120041_-	NA	NA|163aa|up_2|NZ_CP015726.1_9120037_9120526_-	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|537aa|up_1|NZ_CP015726.1_9120817_9122428_+	NA	NA|183aa|up_0|NZ_CP015726.1_9122388_9122937_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	cas6|230aa|down_0|NZ_CP015726.1_9124269_9124959_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|483aa|down_1|NZ_CP015726.1_9124946_9126395_+	NA	cas7|358aa|down_2|NZ_CP015726.1_9126395_9127469_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|227aa|down_3|NZ_CP015726.1_9127452_9128133_+	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|809aa|down_4|NZ_CP015726.1_9128114_9130541_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas1|327aa|down_5|NZ_CP015726.1_9131057_9132038_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|down_6|NZ_CP015726.1_9132043_9132307_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|193aa|down_7|NZ_CP015726.1_9134062_9134641_-	cd03394, PAP2_like_5, PAP2_like_5 proteins	NA|358aa|down_8|NZ_CP015726.1_9134637_9135711_-	NA	NA|181aa|down_9|NZ_CP015726.1_9135834_9136377_-	NA
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	15	9132407-9133874	3,14,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas7,cas5,cas3,cas1,cas2	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Unclear	GTTGCGAACCCTCCAGGGCTGATGAGGAC,GTCCTCATCAGCCCTGGAGGGTTCGCAAC,GTCCTCATCAGCCCTGGAGGGTTCGCAAC	29,29,29	0	0	NA	NA	NA:NA:NA	22,22,22	22	Unclear	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|537aa|up_8|NZ_CP015726.1_9120817_9122428_+,NA|483aa|up_5|NZ_CP015726.1_9124946_9126395_+,NA|358aa|down_1|NZ_CP015726.1_9134637_9135711_-,NA|181aa|down_2|NZ_CP015726.1_9135834_9136377_-,NA|63aa|down_4|NZ_CP015726.1_9137612_9137801_+,NA|75aa|down_8|NZ_CP015726.1_9141178_9141403_+	NA|163aa|up_9|NZ_CP015726.1_9120037_9120526_-	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|537aa|up_8|NZ_CP015726.1_9120817_9122428_+	NA	NA|183aa|up_7|NZ_CP015726.1_9122388_9122937_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	cas6|230aa|up_6|NZ_CP015726.1_9124269_9124959_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|483aa|up_5|NZ_CP015726.1_9124946_9126395_+	NA	cas7|358aa|up_4|NZ_CP015726.1_9126395_9127469_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|227aa|up_3|NZ_CP015726.1_9127452_9128133_+	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|809aa|up_2|NZ_CP015726.1_9128114_9130541_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas1|327aa|up_1|NZ_CP015726.1_9131057_9132038_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|up_0|NZ_CP015726.1_9132043_9132307_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|193aa|down_0|NZ_CP015726.1_9134062_9134641_-	cd03394, PAP2_like_5, PAP2_like_5 proteins	NA|358aa|down_1|NZ_CP015726.1_9134637_9135711_-	NA	NA|181aa|down_2|NZ_CP015726.1_9135834_9136377_-	NA	NA|148aa|down_3|NZ_CP015726.1_9136665_9137109_-	COG1396, HipB, Predicted transcriptional regulators [Transcription]	NA|63aa|down_4|NZ_CP015726.1_9137612_9137801_+	NA	NA|236aa|down_5|NZ_CP015726.1_9138844_9139552_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|185aa|down_6|NZ_CP015726.1_9139640_9140195_+	pfam02467, Whib, Transcription factor WhiB	NA|282aa|down_7|NZ_CP015726.1_9140191_9141037_+	pfam10935, DUF2637, Protein of unknown function (DUF2637)	NA|75aa|down_8|NZ_CP015726.1_9141178_9141403_+	NA	NA|204aa|down_9|NZ_CP015726.1_9141402_9142014_+	pfam05713, MobC, Bacterial mobilisation protein (MobC)
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	16	9697371-9697476	15	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	AGCCGGAGCGGCGCGAGACGCCGCG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA|305aa|up_6|NZ_CP015726.1_9683727_9684642_+,NA|88aa|down_7|NZ_CP015726.1_9707481_9707745_-,NA|196aa|down_8|NZ_CP015726.1_9707957_9708545_-	NA|257aa|up_9|NZ_CP015726.1_9680768_9681539_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|246aa|up_8|NZ_CP015726.1_9681616_9682354_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|419aa|up_7|NZ_CP015726.1_9682394_9683651_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|305aa|up_6|NZ_CP015726.1_9683727_9684642_+	NA	NA|557aa|up_5|NZ_CP015726.1_9684713_9686384_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|150aa|up_4|NZ_CP015726.1_9686479_9686929_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|203aa|up_3|NZ_CP015726.1_9692741_9693350_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|832aa|up_2|NZ_CP015726.1_9693459_9695955_+	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity	NA|310aa|up_1|NZ_CP015726.1_9696081_9697011_+	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|111aa|up_0|NZ_CP015726.1_9697007_9697340_+	pfam06947, DUF1290, Protein of unknown function (DUF1290)	NA|240aa|down_0|NZ_CP015726.1_9698403_9699123_+	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|257aa|down_1|NZ_CP015726.1_9700131_9700902_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|158aa|down_2|NZ_CP015726.1_9700954_9701428_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|209aa|down_3|NZ_CP015726.1_9701596_9702223_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|499aa|down_4|NZ_CP015726.1_9702283_9703780_+	PRK03348, PRK03348, DNA polymerase IV; Provisional	NA|123aa|down_5|NZ_CP015726.1_9703769_9704138_-	pfam05239, PRC, PRC-barrel domain	NA|966aa|down_6|NZ_CP015726.1_9704507_9707405_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|88aa|down_7|NZ_CP015726.1_9707481_9707745_-	NA	NA|196aa|down_8|NZ_CP015726.1_9707957_9708545_-	NA	NA|609aa|down_9|NZ_CP015726.1_9710529_9712356_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)
GCF_001650215.1_ASM165021v1	NZ_CP015726	Streptomyces sp. RTd22 chromosome, complete genome	17	10625665-10625752	16	CRISPRCasFinder	no		csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	Orphan	TCCCCCAGCTACCGCTGGGAGGTGCCCCCTG	31	1	1	10625696-10625721	NZ_CP015726.1_8052309-8052334	NA	1	1	Orphan	csa3,DinG,casR,c2c9_V-U4,WYL,cas4,DEDDh,cas3,cas6,cas7,cas5,cas1,cas2,Cas14u_CAS-V	NA,NA|218aa|down_7|NZ_CP015726.1_10632333_10632987_+,NA|286aa|down_8|NZ_CP015726.1_10632983_10633841_+	NA|399aa|up_9|NZ_CP015726.1_10613896_10615093_+	PRK06847, PRK06847, hypothetical protein; Provisional	NA|439aa|up_8|NZ_CP015726.1_10615198_10616515_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|611aa|up_7|NZ_CP015726.1_10616564_10618397_+	PRK05899, PRK05899, transketolase; Reviewed	NA|339aa|up_6|NZ_CP015726.1_10618546_10619563_+	cd08589, PI-PLCc_SaPLC1_like, Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins	NA|79aa|up_5|NZ_CP015726.1_10619564_10619801_-	pfam07311, Dodecin, Dodecin	NA|154aa|up_4|NZ_CP015726.1_10619899_10620361_-	pfam00582, Usp, Universal stress protein family	NA|284aa|up_3|NZ_CP015726.1_10620470_10621322_+	COG1409, Icc, Predicted phosphohydrolases [General function prediction only]	NA|257aa|up_2|NZ_CP015726.1_10621335_10622106_-	pfam14023, DUF4239, Protein of unknown function (DUF4239)	NA|552aa|up_1|NZ_CP015726.1_10623067_10624723_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|246aa|up_0|NZ_CP015726.1_10624847_10625585_+	COG3327, PaaX, Phenylacetic acid-responsive transcriptional repressor [Transcription]	NA|335aa|down_0|NZ_CP015726.1_10625798_10626803_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|327aa|down_1|NZ_CP015726.1_10626911_10627892_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|386aa|down_2|NZ_CP015726.1_10627938_10629096_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|263aa|down_3|NZ_CP015726.1_10629150_10629939_+	PRK07831, PRK07831, SDR family oxidoreductase	NA|205aa|down_4|NZ_CP015726.1_10630008_10630623_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|386aa|down_5|NZ_CP015726.1_10630639_10631797_+	PRK07801, PRK07801, acetyl-CoA C-acetyltransferase	NA|141aa|down_6|NZ_CP015726.1_10631900_10632323_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|218aa|down_7|NZ_CP015726.1_10632333_10632987_+	NA	NA|286aa|down_8|NZ_CP015726.1_10632983_10633841_+	NA	NA|1153aa|down_9|NZ_CP015726.1_10633829_10637288_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
