assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001651965.2_ASM165196v2	NZ_CP015843	Escherichia coli O157:H7 strain FRIK2455, complete genome	1	71506-71640	1	CRISPRCasFinder	no		DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|190aa|down_7|NZ_CP015843.2_80681_81251_+	NA|274aa|up_9|NZ_CP015843.2_56579_57401_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP015843.2_57397_58387_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP015843.2_58386_59673_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP015843.2_59725_62080_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP015843.2_62334_63150_+	PRK09430, djlA, co-chaperone DjlA	NA|256aa|up_4|NZ_CP015843.2_63444_64212_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|220aa|up_3|NZ_CP015843.2_64629_65289_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP015843.2_65300_68207_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP015843.2_68370_70722_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP015843.2_70796_71492_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP015843.2_71691_73194_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP015843.2_73204_74905_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP015843.2_75243_76122_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP015843.2_76207_76972_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP015843.2_77058_77757_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP015843.2_77740_79351_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP015843.2_79326_80310_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP015843.2_80681_81251_+	NA	NA|553aa|down_8|NZ_CP015843.2_81479_83138_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP015843.2_83226_83358_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_001651965.2_ASM165196v2	NZ_CP015843	Escherichia coli O157:H7 strain FRIK2455, complete genome	2	3717887-3718099	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP015843.2_3709699_3710461_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP015843.2_3710441_3711491_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP015843.2_3711487_3711967_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP015843.2_3711966_3712677_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP015843.2_3712695_3713007_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP015843.2_3713200_3713524_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP015843.2_3713573_3714179_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP015843.2_3714178_3715606_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP015843.2_3715607_3716516_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP015843.2_3716767_3717805_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP015843.2_3718194_3718488_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP015843.2_3718484_3719408_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP015843.2_3719404_3720055_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP015843.2_3720036_3720783_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP015843.2_3720793_3721849_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP015843.2_3721860_3722397_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP015843.2_3722393_3723956_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP015843.2_3724053_3726753_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP015843.2_3726944_3727097_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP015843.2_3727360_3728095_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_001651965.2_ASM165196v2	NZ_CP015843	Escherichia coli O157:H7 strain FRIK2455, complete genome	3	3743790-3743878	3	CRISPRCasFinder	no	cas3	DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|600aa|up_9|NZ_CP015843.2_3729880_3731680_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_8|NZ_CP015843.2_3731995_3732361_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP015843.2_3732438_3733710_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP015843.2_3733700_3733961_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP015843.2_3733977_3734553_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP015843.2_3735557_3736337_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP015843.2_3737744_3739199_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP015843.2_3739268_3740054_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP015843.2_3740372_3741650_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP015843.2_3741676_3743155_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP015843.2_3744217_3744889_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP015843.2_3745043_3745664_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP015843.2_3745677_3746352_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP015843.2_3746585_3747734_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP015843.2_3747730_3748645_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP015843.2_3748704_3750003_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP015843.2_3750090_3751728_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP015843.2_3751955_3752747_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP015843.2_3752817_3753153_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP015843.2_3753152_3753401_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_001651965.2_ASM165196v2	NZ_CP015843	Escherichia coli O157:H7 strain FRIK2455, complete genome	4	5485174-5485323	4	CRISPRCasFinder	no		DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|579aa|up_6|NZ_CP015843.2_5476339_5478076_+,NA|245aa|down_7|NZ_CP015843.2_5494400_5495135_+	NA|238aa|up_9|NZ_CP015843.2_5474242_5474956_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP015843.2_5475026_5475620_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP015843.2_5475764_5476217_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|579aa|up_6|NZ_CP015843.2_5476339_5478076_+	NA	NA|335aa|up_5|NZ_CP015843.2_5478132_5479137_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP015843.2_5479298_5479715_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP015843.2_5479760_5480264_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP015843.2_5480456_5481653_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP015843.2_5481707_5484563_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP015843.2_5484562_5485006_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP015843.2_5485359_5486871_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP015843.2_5487137_5488238_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP015843.2_5488237_5489320_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP015843.2_5489480_5490983_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP015843.2_5491112_5492132_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|425aa|down_5|NZ_CP015843.2_5492576_5493851_+	PRK09692, PRK09692, integrase; Provisional	NA|102aa|down_6|NZ_CP015843.2_5494018_5494324_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|245aa|down_7|NZ_CP015843.2_5494400_5495135_+	NA	NA|415aa|down_8|NZ_CP015843.2_5495172_5496417_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|191aa|down_9|NZ_CP015843.2_5496742_5497315_-	pfam07455, Psu, Phage polarity suppression protein (Psu)
GCF_001651965.2_ASM165196v2	NZ_CP015845	Escherichia coli O157:H7 strain FRIK2455 plasmid p35K, complete sequence	1	3053-3161	1	CRISPRCasFinder	no			Orphan	ATTTATGGTCAAAAAGGGACAGATTTATGGT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,csa3,PrimPol,cas3,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|89aa|up_3|NZ_CP015845.2_615_882_-,NA|75aa|up_2|NZ_CP015845.2_932_1157_-,NA|70aa|up_1|NZ_CP015845.2_1254_1464_-,NA|108aa|up_0|NZ_CP015845.2_1504_1828_-,NA|48aa|down_2|NZ_CP015845.2_5627_5771_+,NA|78aa|down_3|NZ_CP015845.2_5811_6045_-,NA|98aa|down_7|NZ_CP015845.2_8632_8926_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|86aa|up_4|NZ_CP015845.2_383_641_-	pfam15731, MqsA_antitoxin, Antitoxin component of bacterial toxin-antitoxin system, MqsA	NA|89aa|up_3|NZ_CP015845.2_615_882_-	NA	NA|75aa|up_2|NZ_CP015845.2_932_1157_-	NA	NA|70aa|up_1|NZ_CP015845.2_1254_1464_-	NA	NA|108aa|up_0|NZ_CP015845.2_1504_1828_-	NA	NA|335aa|down_0|NZ_CP015845.2_3502_4507_+	pfam01051, Rep_3, Initiator Replication protein	NA|113aa|down_1|NZ_CP015845.2_4946_5285_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|48aa|down_2|NZ_CP015845.2_5627_5771_+	NA	NA|78aa|down_3|NZ_CP015845.2_5811_6045_-	NA	NA|214aa|down_4|NZ_CP015845.2_6057_6699_-	pfam07996, T4SS, Type IV secretion system proteins	NA|332aa|down_5|NZ_CP015845.2_6700_7696_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|204aa|down_6|NZ_CP015845.2_8028_8640_+	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|98aa|down_7|NZ_CP015845.2_8632_8926_+	NA	NA|107aa|down_8|NZ_CP015845.2_8983_9304_+	COG3702, VirB3, Type IV secretory pathway, VirB3 components [Intracellular trafficking and secretion]	NA|791aa|down_9|NZ_CP015845.2_9306_11679_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family
