assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001653395.1_ASM165339v1	NZ_CP011483	Helicobacter pylori strain DU15 chromosome, complete genome	1	366181-366380	1	CRISPRCasFinder	no		cas2,cas14j,cas3,DEDDh	Orphan	AAGTTGTAAGTCCCTTGATTGAA	23	0	0	NA	NA	I-B	3	3	Orphan	cas2,cas14j,cas3,DEDDh	NA|220aa|up_7|NZ_CP011483.1_353945_354605_-,NA	NA|252aa|up_9|NZ_CP011483.1_352587_353343_-	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]	NA|201aa|up_8|NZ_CP011483.1_353339_353942_-	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]	NA|220aa|up_7|NZ_CP011483.1_353945_354605_-	NA	NA|268aa|up_6|NZ_CP011483.1_354601_355405_-	COG0496, SurE, Predicted acid phosphatase [General function prediction only]	NA|304aa|up_5|NZ_CP011483.1_355401_356313_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|181aa|up_4|NZ_CP011483.1_356328_356871_-	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|317aa|up_3|NZ_CP011483.1_356871_357822_-	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|382aa|up_2|NZ_CP011483.1_357790_358936_-	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|194aa|up_1|NZ_CP011483.1_358932_359514_-	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|69aa|up_0|NZ_CP011483.1_359659_359866_+	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|332aa|down_0|NZ_CP011483.1_367232_368228_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|231aa|down_1|NZ_CP011483.1_368371_369064_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|1086aa|down_2|NZ_CP011483.1_369158_372416_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|144aa|down_3|NZ_CP011483.1_372415_372847_+	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|812aa|down_4|NZ_CP011483.1_373024_375460_+	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|515aa|down_5|NZ_CP011483.1_375713_377258_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|532aa|down_6|NZ_CP011483.1_377795_379391_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|516aa|down_7|NZ_CP011483.1_379412_380960_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|677aa|down_8|NZ_CP011483.1_381804_383835_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|382aa|down_9|NZ_CP011483.1_383844_384990_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]
GCF_001653395.1_ASM165339v1	NZ_CP011483	Helicobacter pylori strain DU15 chromosome, complete genome	2	683868-684014	2	CRISPRCasFinder	no		cas2,cas14j,cas3,DEDDh	Orphan	GTTGAAATTAAACGATCCGCCATTAAA	27	0	0	NA	NA	NA	2	2	Orphan	cas2,cas14j,cas3,DEDDh	NA|111aa|up_2|NZ_CP011483.1_674486_674819_+,NA|252aa|up_0|NZ_CP011483.1_675783_676539_+,NA|206aa|down_5|NZ_CP011483.1_693226_693844_-	NA|174aa|up_9|NZ_CP011483.1_666206_666728_-	PRK01250, PRK01250, inorganic diphosphatase	NA|199aa|up_8|NZ_CP011483.1_667361_667958_-	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|333aa|up_7|NZ_CP011483.1_668010_669009_-	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|192aa|up_6|NZ_CP011483.1_669033_669609_-	PRK00279, adk, adenylate kinase; Reviewed	NA|578aa|up_5|NZ_CP011483.1_669625_671359_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|314aa|up_4|NZ_CP011483.1_671393_672335_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|658aa|up_3|NZ_CP011483.1_672412_674386_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|111aa|up_2|NZ_CP011483.1_674486_674819_+	NA	NA|234aa|up_1|NZ_CP011483.1_675082_675784_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|252aa|up_0|NZ_CP011483.1_675783_676539_+	NA	NA|190aa|down_0|NZ_CP011483.1_686306_686876_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|1027aa|down_1|NZ_CP011483.1_686872_689953_-	pfam00873, ACR_tran, AcrB/AcrD/AcrF family	NA|235aa|down_2|NZ_CP011483.1_689965_690670_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|478aa|down_3|NZ_CP011483.1_690680_692114_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|340aa|down_4|NZ_CP011483.1_692138_693158_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|206aa|down_5|NZ_CP011483.1_693226_693844_-	NA	NA|219aa|down_6|NZ_CP011483.1_693840_694497_-	PRK13913, PRK13913, 3-methyladenine DNA glycosylase; Provisional	NA|511aa|down_7|NZ_CP011483.1_694614_696147_-	PRK12584, PRK12584, flagellin A; Reviewed	NA|594aa|down_8|NZ_CP011483.1_696311_698093_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|434aa|down_9|NZ_CP011483.1_698164_699466_+	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain
GCF_001653395.1_ASM165339v1	NZ_CP011483	Helicobacter pylori strain DU15 chromosome, complete genome	3	771274-771367	3	CRISPRCasFinder	no		cas2,cas14j,cas3,DEDDh	Orphan	AAAGATCTCCCTAAAGACTTACA	23	0	0	NA	NA	NA	1	1	Orphan	cas2,cas14j,cas3,DEDDh	NA|377aa|up_9|NZ_CP011483.1_759529_760660_-,NA|115aa|up_8|NZ_CP011483.1_761082_761427_+,NA|127aa|up_7|NZ_CP011483.1_762309_762690_-,NA|216aa|up_4|NZ_CP011483.1_765159_765807_-,NA|536aa|up_2|NZ_CP011483.1_766838_768446_+,NA|47aa|up_0|NZ_CP011483.1_770081_770222_+,NA|116aa|down_6|NZ_CP011483.1_780404_780752_-	NA|377aa|up_9|NZ_CP011483.1_759529_760660_-	NA	NA|115aa|up_8|NZ_CP011483.1_761082_761427_+	NA	NA|127aa|up_7|NZ_CP011483.1_762309_762690_-	NA	NA|197aa|up_6|NZ_CP011483.1_763530_764121_+	pfam16707, CagS, Cag pathogenicity island protein S of Helicobacter pylori	NA|281aa|up_5|NZ_CP011483.1_764301_765144_-	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|216aa|up_4|NZ_CP011483.1_765159_765807_-	NA	NA|253aa|up_3|NZ_CP011483.1_766075_766834_+	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|536aa|up_2|NZ_CP011483.1_766838_768446_+	NA	NA|523aa|up_1|NZ_CP011483.1_768498_770067_+	COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion]	NA|47aa|up_0|NZ_CP011483.1_770081_770222_+	NA	NA|200aa|down_0|NZ_CP011483.1_773824_774424_+	pfam09053, CagZ, CagZ	NA|331aa|down_1|NZ_CP011483.1_774428_775421_+	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|749aa|down_2|NZ_CP011483.1_775429_777676_+	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|170aa|down_3|NZ_CP011483.1_777983_778493_-	pfam16494, Na_Ca_ex_C, C-terminal extension of sodium/calcium exchanger domain	NA|482aa|down_4|NZ_CP011483.1_778502_779948_-	pfam07946, DUF1682, Protein of unknown function (DUF1682)	NA|119aa|down_5|NZ_CP011483.1_779940_780297_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|116aa|down_6|NZ_CP011483.1_780404_780752_-	NA	NA|284aa|down_7|NZ_CP011483.1_780889_781741_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|331aa|down_8|NZ_CP011483.1_781819_782812_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|302aa|down_9|NZ_CP011483.1_782808_783714_-	COG1159, Era, GTPase [General function prediction only]
