assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001653475.1_ASM165347v1	NZ_CP011487	Helicobacter pylori strain PNG84A, complete genome	1	304855-304979	1	CRISPRCasFinder	no		cas3,DEDDh	Orphan	AGAAAGGCTCTCCAGCGTTACTGAAGAAATCATTT	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|102aa|up_0|NZ_CP011487.1_304170_304476_+,NA	NA|298aa|up_9|NZ_CP011487.1_297400_298294_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NZ_CP011487.1_298290_298833_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NZ_CP011487.1_298765_299704_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NZ_CP011487.1_299700_300483_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NZ_CP011487.1_300731_301724_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NZ_CP011487.1_301747_302554_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NZ_CP011487.1_302550_302784_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_2|NZ_CP011487.1_302795_303596_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|136aa|up_1|NZ_CP011487.1_303592_304000_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|102aa|up_0|NZ_CP011487.1_304170_304476_+	NA	NA|294aa|down_0|NZ_CP011487.1_305184_306066_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_1|NZ_CP011487.1_306065_307616_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_2|NZ_CP011487.1_307624_309241_-	PRK05380, pyrG, CTP synthetase; Validated	NA|221aa|down_3|NZ_CP011487.1_309498_310161_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_4|NZ_CP011487.1_310204_311908_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_5|NZ_CP011487.1_311925_312957_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|259aa|down_6|NZ_CP011487.1_312943_313720_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|619aa|down_7|NZ_CP011487.1_313716_315573_+	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase	NA|603aa|down_8|NZ_CP011487.1_315569_317378_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|253aa|down_9|NZ_CP011487.1_317392_318151_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)
GCF_001653475.1_ASM165347v1	NZ_CP011487	Helicobacter pylori strain PNG84A, complete genome	2	777265-777344	2	CRISPRCasFinder	no		cas3,DEDDh	Orphan	ACTTGAGTGTAAATGGGCTCTTC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|274aa|up_7|NZ_CP011487.1_769767_770589_-,NA|321aa|up_6|NZ_CP011487.1_770588_771551_-,NA|77aa|down_0|NZ_CP011487.1_780409_780640_+,NA|269aa|down_4|NZ_CP011487.1_784738_785545_+,NA|144aa|down_5|NZ_CP011487.1_785599_786031_+,NA|371aa|down_6|NZ_CP011487.1_786032_787145_+,NA|382aa|down_7|NZ_CP011487.1_787155_788301_+,NA|238aa|down_8|NZ_CP011487.1_788297_789011_+,NA|307aa|down_9|NZ_CP011487.1_789080_790001_-	NA|413aa|up_9|NZ_CP011487.1_766798_768037_+	PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed	NA|313aa|up_8|NZ_CP011487.1_768059_768998_+	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	NA|274aa|up_7|NZ_CP011487.1_769767_770589_-	NA	NA|321aa|up_6|NZ_CP011487.1_770588_771551_-	NA	NA|228aa|up_5|NZ_CP011487.1_771563_772247_-	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|288aa|up_4|NZ_CP011487.1_772259_773123_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|68aa|up_3|NZ_CP011487.1_773147_773351_-	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|439aa|up_2|NZ_CP011487.1_773615_774932_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|255aa|up_1|NZ_CP011487.1_774968_775733_+	TIGR00067, Glutamate_racemase, glutamate racemase	NA|60aa|up_0|NZ_CP011487.1_775890_776070_-	pfam13087, AAA_12, AAA domain	NA|77aa|down_0|NZ_CP011487.1_780409_780640_+	NA	NA|116aa|down_1|NZ_CP011487.1_780804_781152_+	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system	NA|208aa|down_2|NZ_CP011487.1_781153_781777_+	pfam16567, CagD, Pathogenicity island component CagD	NA|984aa|down_3|NZ_CP011487.1_781785_784737_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|269aa|down_4|NZ_CP011487.1_784738_785545_+	NA	NA|144aa|down_5|NZ_CP011487.1_785599_786031_+	NA	NA|371aa|down_6|NZ_CP011487.1_786032_787145_+	NA	NA|382aa|down_7|NZ_CP011487.1_787155_788301_+	NA	NA|238aa|down_8|NZ_CP011487.1_788297_789011_+	NA	NA|307aa|down_9|NZ_CP011487.1_789080_790001_-	NA
GCF_001653475.1_ASM165347v1	NZ_CP011487	Helicobacter pylori strain PNG84A, complete genome	3	847211-847299	3	CRISPRCasFinder	no		cas3,DEDDh	Orphan	TTAAAGACAAAAACGCCCCTAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|205aa|up_6|NZ_CP011487.1_840796_841411_+,NA|208aa|down_2|NZ_CP011487.1_851476_852100_+,NA|59aa|down_5|NZ_CP011487.1_855601_855778_-	NA|281aa|up_9|NZ_CP011487.1_837414_838257_+	pfam05211, NLBH, Neuraminyllactose-binding hemagglutinin precursor (NLBH)	NA|63aa|up_8|NZ_CP011487.1_838356_838545_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|379aa|up_7|NZ_CP011487.1_838698_839835_+	pfam02254, TrkA_N, TrkA-N domain	NA|205aa|up_6|NZ_CP011487.1_840796_841411_+	NA	NA|371aa|up_5|NZ_CP011487.1_841361_842474_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|79aa|up_4|NZ_CP011487.1_842476_842713_-	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_3|NZ_CP011487.1_842712_843441_-	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB	NA|100aa|up_2|NZ_CP011487.1_843691_843991_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|402aa|up_1|NZ_CP011487.1_844001_845207_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|519aa|up_0|NZ_CP011487.1_845224_846781_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|295aa|down_0|NZ_CP011487.1_848726_849611_+	PRK05842, flgD, flagellar hook assembly protein FlgD	NA|606aa|down_1|NZ_CP011487.1_849607_851425_+	PRK05841, flgE, flagellar hook protein FlgE; Validated	NA|208aa|down_2|NZ_CP011487.1_851476_852100_+	NA	NA|383aa|down_3|NZ_CP011487.1_852092_853241_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|677aa|down_4|NZ_CP011487.1_853234_855265_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|59aa|down_5|NZ_CP011487.1_855601_855778_-	NA	NA|516aa|down_6|NZ_CP011487.1_855898_857446_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|528aa|down_7|NZ_CP011487.1_857467_859051_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|down_8|NZ_CP011487.1_859455_861000_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|810aa|down_9|NZ_CP011487.1_861238_863668_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein
GCF_001653475.1_ASM165347v1	NZ_CP011487	Helicobacter pylori strain PNG84A, complete genome	4	1014822-1014907	4	CRISPRCasFinder	no		cas3,DEDDh	Orphan	CATGCGAGAAGTAGTGGTTCAAGAAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh	NA|512aa|up_8|NZ_CP011487.1_1004488_1006024_+,NA|436aa|down_0|NZ_CP011487.1_1016136_1017444_+,NA|52aa|down_9|NZ_CP011487.1_1026107_1026263_-	NA|345aa|up_9|NZ_CP011487.1_1002732_1003767_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|512aa|up_8|NZ_CP011487.1_1004488_1006024_+	NA	NA|251aa|up_7|NZ_CP011487.1_1006044_1006797_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|291aa|up_6|NZ_CP011487.1_1006986_1007859_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NZ_CP011487.1_1007928_1008555_-	TIGR01182, KHG/KDPG_aldolase_	NA|607aa|up_4|NZ_CP011487.1_1008580_1010401_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NZ_CP011487.1_1010466_1011744_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NZ_CP011487.1_1011754_1012438_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NZ_CP011487.1_1012424_1013435_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NZ_CP011487.1_1013596_1014643_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NZ_CP011487.1_1016136_1017444_+	NA	NA|221aa|down_1|NZ_CP011487.1_1017450_1018113_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NZ_CP011487.1_1018401_1018962_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NZ_CP011487.1_1018977_1019370_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NZ_CP011487.1_1019379_1020603_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NZ_CP011487.1_1020615_1021560_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NZ_CP011487.1_1021668_1022991_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NZ_CP011487.1_1023062_1023896_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NZ_CP011487.1_1023906_1025883_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|52aa|down_9|NZ_CP011487.1_1026107_1026263_-	NA
