The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	555966	627516	6178825	transposase,tRNA,protease,integrase	uncultured_Caudovirales_phage(13.33%)	56	544388:544403	631628:631643
544388:544403	attL	AGCACGTCGACGATGT	NA	NA	NA	NA
WP_003249490.1|555966_556485_+|protease	TIGR02281 family clan AA aspartic protease	protease	NA	NA	NA	NA
WP_003249492.1|556495_558754_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	35.7	2.0e-83
WP_003249494.1|558926_559637_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_003249496.1|560194_561652_-	histidine kinase	NA	NA	NA	NA	NA
WP_003249498.1|561786_563001_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_003249505.1|564804_566340_-	HDOD domain-containing protein	NA	NA	NA	NA	NA
WP_003249507.1|566470_567322_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003249509.1|567325_568366_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003249512.1|568673_569705_-	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA	NA
WP_003249514.1|569857_570400_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	39.5	7.9e-26
WP_003249516.1|570491_571103_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_064613792.1|571234_572299_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_004577533.1|572364_573225_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_064613793.1|573212_573686_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_003249525.1|573697_575128_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A067ZJB6	Vibrio_phage	29.3	5.3e-13
WP_004577531.1|575127_577026_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	35.1	1.1e-93
WP_004577530.1|577027_577999_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003249532.1|578093_578354_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_003249534.1|578366_579668_+	GTPase HflX	NA	NA	NA	NA	NA
WP_064613794.1|579764_580940_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_003249538.1|580939_581809_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010955481.1|582110_583298_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_003249542.1|583354_584647_+	adenylosuccinate synthase	NA	A0A2R8FF47	Brazilian_cedratvirus	37.1	9.2e-73
WP_004577529.1|584988_586923_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.3	1.2e-18
WP_004577528.1|587107_587575_+	DUF2867 domain-containing protein	NA	NA	NA	NA	NA
WP_003249548.1|587657_589223_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003249550.1|589222_590236_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003249552.1|591194_593768_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	34.2	7.2e-69
WP_003249554.1|593764_594511_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_003249557.1|594801_595227_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003249563.1|595255_595486_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_012053856.1|595519_596383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003249568.1|596403_596850_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003249571.1|596963_598361_+	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	59.3	9.5e-148
WP_003249577.1|598749_601050_+	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	95.4	1.8e-135
WP_003249578.1|601187_601775_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	27.2	1.6e-08
WP_003249580.1|602125_602575_+	azurin	NA	NA	NA	NA	NA
WP_064613795.1|603374_605006_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	38.8	7.5e-96
WP_064613796.1|605468_606449_+|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	59.0	7.7e-96
WP_064613797.1|606640_608593_+	hypothetical protein	NA	A0A1L2BY82	Clostridium_phage	25.9	1.0e-43
WP_156747498.1|608941_609427_+	DUF4365 domain-containing protein	NA	NA	NA	NA	NA
WP_156747499.1|609423_609795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082916832.1|610383_610701_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_064613800.1|610893_611289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613801.1|611292_611955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613802.1|611980_612499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613796.1|612794_613775_-|transposase	IS5 family transposase	transposase	A0A077K814	Ralstonia_phage	59.0	7.7e-96
WP_064615155.1|614041_615100_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_064613803.1|615369_615576_-	hypothetical protein	NA	A0A2H4JG60	uncultured_Caudovirales_phage	61.5	3.0e-10
WP_082916833.1|615881_616379_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_082916834.1|616498_618355_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_064613805.1|618351_619656_-	SIR2 family protein	NA	NA	NA	NA	NA
WP_177342663.1|620115_622320_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_064613807.1|622478_622982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613808.1|622978_625090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082916835.1|625089_627516_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
631628:631643	attR	ACATCGTCGACGTGCT	NA	NA	NA	NA
>prophage 2
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	731906	773571	6178825	transposase	Paenibacillus_phage(16.67%)	41	NA	NA
WP_085985448.1|731906_732760_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	46.7	1.8e-24
WP_012274344.1|732840_733110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012274345.1|733344_735051_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	36.5	8.9e-23
WP_082916938.1|735087_735966_-	aerotaxis receptor	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.8	7.3e-21
WP_011911495.1|736298_737327_-|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_012274346.1|737933_738914_-|transposase	IS5 family transposase	transposase	Q38213	Escherichia_phage	58.5	6.1e-101
WP_156747500.1|739176_740029_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	46.7	1.8e-24
WP_041166599.1|740068_741733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012274340.1|741902_743774_+	ATPase	NA	NA	NA	NA	NA
WP_064613827.1|743754_744690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012274338.1|744686_745955_+	7-cyano-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_012274337.1|746533_746788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166598.1|747098_747386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012274334.1|747437_747860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012274333.1|747958_750493_+	ATP-dependent helicase HrpB	NA	A0A1V0SIV3	Klosneuvirus	26.2	5.5e-29
WP_080516269.1|750649_751123_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_171577294.1|751695_751944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150104962.1|751878_752457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012274330.1|752536_753265_+	metallophosphoesterase family protein	NA	A0A285PXQ5	Cedratvirus	27.7	1.2e-21
WP_012274329.1|753322_753682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080516283.1|754213_754471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150104973.1|755236_755770_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012274326.1|755766_756588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012274325.1|756661_757018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012274324.1|757495_759322_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_012274321.1|760250_761159_+	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_012274320.1|761317_762436_+	RES domain-containing protein	NA	NA	NA	NA	NA
WP_012274319.1|762564_762933_+	DNA binding protein	NA	NA	NA	NA	NA
WP_064615157.1|763126_763357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613828.1|763419_763629_+	hypothetical protein	NA	A0A2H4JG60	uncultured_Caudovirales_phage	46.7	5.4e-07
WP_064613829.1|763739_764060_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_064613830.1|764056_764392_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_010792763.1|764455_765991_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	49.6	2.9e-118
WP_156747501.1|766140_767598_-	DUF4263 domain-containing protein	NA	NA	NA	NA	NA
WP_064613832.1|768038_768488_-	3'-5' exoribonuclease	NA	NA	NA	NA	NA
WP_156747502.1|768921_769170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613835.1|769815_770286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060709155.1|770569_771946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080516273.1|772041_772398_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	40.2	2.8e-16
WP_177342664.1|772425_772578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003117291.1|772590_773571_+|transposase	IS5-like element ISPa41 family transposase	transposase	Q38213	Escherichia_phage	59.2	1.9e-102
>prophage 3
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	863355	898967	6178825	transposase	Leptospira_phage(16.67%)	29	NA	NA
WP_177342666.1|863355_863856_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_082916845.1|863852_864332_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_080676083.1|864405_864762_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	40.2	6.3e-16
WP_024086152.1|864780_866298_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	36.4	3.3e-85
WP_082916846.1|867018_867414_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_035834956.1|868086_869592_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	54.3	8.3e-150
WP_156747508.1|871118_873470_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_082916847.1|873429_874287_+	FAD binding domain-containing protein	NA	NA	NA	NA	NA
WP_082916848.1|874283_875462_+	SRPBCC family protein	NA	A0A0P0IVM8	Acinetobacter_phage	36.0	1.0e-14
WP_064613868.1|875570_876908_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.7	2.2e-45
WP_064613869.1|877114_878296_+	6-hydroxy-3-succinoylpyridine 3-monooxygenase HspB	NA	NA	NA	NA	NA
WP_177342667.1|878475_879438_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_156747536.1|879665_880367_+	Asp/Glu racemase	NA	NA	NA	NA	NA
WP_064613871.1|880366_881149_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_064613872.1|881150_882182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082916849.1|882217_882862_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_064613873.1|883198_884524_+	outer membrane porin, OprD family	NA	NA	NA	NA	NA
WP_064615162.1|884901_886791_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	47.9	8.0e-25
WP_011911495.1|887277_888306_+|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_014754493.1|888458_889034_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	61.5	1.1e-54
WP_014754503.1|889260_890235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017735521.1|890783_891149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014754508.1|891518_891980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017735520.1|892390_892972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085983057.1|893132_893986_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	46.7	1.8e-24
WP_012274344.1|894066_894336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014754513.1|894570_896277_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	37.9	1.2e-22
WP_014754514.1|896313_897879_-	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	57.0	1.4e-43
WP_156747509.1|898114_898967_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	46.7	2.3e-24
>prophage 4
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	911862	975920	6178825	tRNA,integrase,transposase,protease	Staphylococcus_phage(23.08%)	49	917728:917744	941751:941767
WP_011911495.1|911862_912891_+|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_064613865.1|913194_913887_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_156747510.1|913973_915196_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	74.5	1.4e-115
WP_156747511.1|916503_917091_+	hypothetical protein	NA	NA	NA	NA	NA
917728:917744	attL	GAGCAGTTCCACGGCAG	NA	NA	NA	NA
WP_079976764.1|919205_919562_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	42.9	4.0e-18
WP_064613883.1|920928_921315_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_064613884.1|921540_922974_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_082916853.1|922966_924460_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_082916854.1|924509_924911_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_064613885.1|924938_926375_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_082916855.1|926433_926946_-	RidA family protein	NA	NA	NA	NA	NA
WP_064613886.1|927077_928082_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_011911495.1|928355_929384_-|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_041167257.1|929447_930281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041167256.1|930425_931481_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014754489.1|931480_931696_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_014754487.1|932176_937078_-	DEAD/DEAH box helicase	NA	A0A2H4UTW8	Bodo_saltans_virus	24.6	6.7e-39
WP_014754486.1|937218_938424_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	47.9	2.5e-104
WP_003249902.1|939088_939376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613887.1|939839_942650_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
941751:941767	attR	GAGCAGTTCCACGGCAG	NA	NA	NA	NA
WP_003249907.1|942725_943871_-	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA	NA
WP_003249910.1|943933_945604_-	lactate permease LctP family transporter	NA	NA	NA	NA	NA
WP_003249911.1|945860_946628_+	FCD domain-containing protein	NA	NA	NA	NA	NA
WP_003249914.1|946790_947273_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	42.7	1.2e-25
WP_003249916.1|947436_947871_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003249918.1|947934_948471_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003249922.1|948568_948973_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_085983016.1|949203_950558_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	54.4	6.5e-77
WP_003249924.1|950678_952352_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010955367.1|952544_953102_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_003249929.1|953203_955129_+	molecular chaperone DnaK	NA	A0A2P1EIW2	Megavirus	49.4	4.8e-150
WP_003249931.1|955327_956452_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	35.6	1.2e-23
WP_003249933.1|956465_957269_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_003249935.1|957534_958671_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.0	2.1e-44
WP_003249937.1|958776_961998_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003249939.1|961994_962477_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_012053750.1|962454_962904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003249945.1|962916_963225_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_003249947.1|963327_963951_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_003249950.1|964157_966062_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	I3UL75	Ostreococcus_lucimarinus_virus	48.0	7.1e-114
WP_003249952.1|966070_966922_+	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_003249955.1|966938_968279_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003249956.1|968344_969100_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003249958.1|969104_969503_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003249960.1|969916_970375_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_003249963.1|970434_971916_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003249965.1|971943_974484_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.2	2.9e-22
WP_003249967.1|974600_974999_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_003249968.1|975002_975920_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	1590583	1639128	6178825	portal,integrase,tail,tRNA,capsid,holin,transposase,head,terminase	Pseudomonas_phage(48.72%)	63	1588701:1588745	1644699:1644743
1588701:1588745	attL	TTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCC	NA	NA	NA	NA
WP_064613962.1|1590583_1592371_-	N-acetylglutaminylglutamine amidotransferase	NA	R4TIC1	Phaeocystis_globosa_virus	27.9	2.0e-33
WP_064613963.1|1592407_1593598_-|integrase	site-specific integrase	integrase	A0A1B0Z061	Pseudomonas_phage	55.4	3.8e-113
WP_064613964.1|1593785_1594313_-	ead/Ea22-like family protein	NA	K4NWM6	Pseudomonas_phage	46.5	2.0e-05
WP_064613965.1|1594309_1595044_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	55.8	2.8e-74
WP_064613966.1|1595040_1595361_-	hypothetical protein	NA	H2BDI8	Pseudomonas_virus	56.6	1.2e-18
WP_064613967.1|1595357_1596092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_177342668.1|1596088_1596232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613968.1|1596775_1597003_-	Arc family DNA-binding protein	NA	A0A1W6JTB4	Pseudomonas_phage	58.6	5.6e-10
WP_016489240.1|1596992_1597184_-	carbon storage regulator CsrA	NA	J7I430	Pseudomonas_phage	68.6	7.3e-11
WP_064613969.1|1597233_1598067_-|transposase	transposase	transposase	A0A0A0YRT7	Pseudomonas_phage	89.5	1.7e-112
WP_064613970.1|1598063_1598312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613971.1|1598385_1599171_-	phage antirepressor	NA	A0A1W6JTB0	Pseudomonas_phage	44.5	1.3e-58
WP_064613972.1|1599278_1599551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064613973.1|1599588_1599981_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JTA9	Pseudomonas_phage	61.9	5.7e-26
WP_082916859.1|1600104_1600866_-	S24 family peptidase	NA	J7I0S2	Pseudomonas_phage	32.2	1.3e-21
WP_177342669.1|1600963_1601299_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_064613975.1|1601439_1601715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613976.1|1601711_1602017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054830762.1|1602013_1602250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613977.1|1602246_1602546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082916861.1|1602533_1603280_+	Rha family transcriptional regulator	NA	A0A192Y918	Salmonella_phage	54.9	1.7e-23
WP_064613978.1|1603276_1603588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613979.1|1603584_1604148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613980.1|1604144_1604375_+	hypothetical protein	NA	A0A1W6JTF8	Pseudomonas_phage	57.9	1.1e-16
WP_064613981.1|1605125_1605944_+	ATP-binding protein	NA	A0A2H4J2L2	uncultured_Caudovirales_phage	45.0	9.4e-55
WP_064613982.1|1605940_1607353_+	AAA family ATPase	NA	A0A0A0YUG7	Pseudomonas_phage	74.9	8.8e-186
WP_064613983.1|1607339_1607852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613984.1|1607848_1608148_+	hypothetical protein	NA	A0A1W6JTC1	Pseudomonas_phage	51.7	7.4e-18
WP_064613985.1|1608144_1608693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613986.1|1609095_1609344_+	DUF2790 domain-containing protein	NA	NA	NA	NA	NA
WP_012313239.1|1609741_1609930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019438287.1|1610346_1610580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019438288.1|1610865_1611198_+|holin	phage holin, lambda family	holin	A0A2H4J1U5	uncultured_Caudovirales_phage	90.9	1.6e-53
WP_019438289.1|1611264_1611495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009685289.1|1611597_1611822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613987.1|1611886_1612075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_177342692.1|1612110_1612380_+	HNH endonuclease	NA	A0A0R6PHK1	Moraxella_phage	64.9	1.4e-23
WP_064613989.1|1612525_1613023_+|terminase	terminase	terminase	Q3HQS6	Burkholderia_phage	54.4	1.8e-29
WP_064613990.1|1613025_1614693_+|terminase	terminase large subunit	terminase	Q3HQS7	Burkholderia_phage	64.9	5.7e-208
WP_064613991.1|1614750_1616700_+|capsid	phage major capsid protein	capsid	S4TNE3	Salmonella_phage	52.2	3.2e-170
WP_082916862.1|1616747_1616972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064613992.1|1616986_1618354_+|portal	phage portal protein	portal	F8TVA0	EBPR_siphovirus	58.5	1.0e-130
WP_064613993.1|1618340_1619267_+	hypothetical protein	NA	S4TNN1	Salmonella_phage	60.0	7.4e-48
WP_064613994.1|1619263_1619587_+|head,tail	phage gp6-like head-tail connector protein	head,tail	B5WZS4	Pseudomonas_phage	43.5	1.4e-17
WP_064615170.1|1619589_1619928_+|head	phage head closure protein	head	A0A1J0GUY4	Halomonas_phage	53.6	1.3e-21
WP_064613995.1|1619920_1620406_+	HK97 gp10 family phage protein	NA	A0A0U3TGT7	Pseudomonas_phage	76.8	2.0e-57
WP_064613996.1|1620402_1620771_+	DUF3168 domain-containing protein	NA	Q9MCA6	Pseudomonas_phage	61.5	6.7e-37
WP_023389757.1|1620833_1621325_+|tail	major tail subunit	tail	A0A0U4ISC1	Pseudomonas_phage	60.8	5.4e-50
WP_064613997.1|1621328_1621805_+|tail	phage tail assembly chaperone family protein, TAC	tail	K7PJU9	Enterobacteria_phage	64.7	1.1e-36
WP_156747514.1|1622079_1622217_+	lipoprotein	NA	NA	NA	NA	NA
WP_011911495.1|1622205_1623234_-|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_064613998.1|1623354_1623999_+	hypothetical protein	NA	A0A2H4J8D6	uncultured_Caudovirales_phage	51.9	6.7e-48
WP_064615171.1|1624037_1626494_+|tail	tail tape measure protein	tail	A0A2H4PI09	Pseudomonas_phage	42.4	2.2e-160
WP_064613999.1|1626490_1626973_+	DUF1833 family protein	NA	A0A2H4J983	uncultured_Caudovirales_phage	55.3	1.2e-44
WP_064614000.1|1627032_1627278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614001.1|1627356_1627776_+	hypothetical protein	NA	A0A0H5AUG1	Pseudomonas_phage	59.4	6.7e-41
WP_064614002.1|1627747_1630846_+	hypothetical protein	NA	A0A2H4J0V9	uncultured_Caudovirales_phage	48.2	2.2e-282
WP_064614004.1|1631430_1633680_+	hypothetical protein	NA	A0A0H5ARL8	Pseudomonas_phage	47.0	7.1e-28
WP_011911495.1|1633730_1634759_-|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_064614005.1|1635083_1635572_+	glycoside hydrolase family 104 protein	NA	Q9MC90	Pseudomonas_phage	64.8	1.9e-55
WP_064614006.1|1635568_1636090_+	DUF2514 domain-containing protein	NA	A0A2H4J3Q6	uncultured_Caudovirales_phage	77.9	2.0e-26
WP_064614007.1|1636124_1636541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614008.1|1637163_1639128_-|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
1644699:1644743	attR	GGGGCCGCTTTGCGGCCCTTTCGCGACACAAGGCCGCTCCCACAA	NA	NA	NA	NA
>prophage 6
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	2250443	2262271	6178825		Pseudomonas_phage(42.86%)	25	NA	NA
WP_012053046.1|2250443_2250656_-	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	100.0	6.8e-34
WP_177342670.1|2250665_2250842_-	hypothetical protein	NA	A0A2H4J7S3	uncultured_Caudovirales_phage	84.5	9.1e-24
WP_064614135.1|2250880_2251198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614136.1|2251251_2251734_-	class I SAM-dependent methyltransferase	NA	A0A0N7IRF6	Acinetobacter_phage	65.4	7.4e-60
WP_064614137.1|2251730_2252126_-	DUF2591 domain-containing protein	NA	A0A125RNP6	Pseudomonas_phage	32.9	2.5e-13
WP_064614138.1|2252400_2252667_-	hypothetical protein	NA	A0A2H4J399	uncultured_Caudovirales_phage	71.6	1.3e-26
WP_064614139.1|2252663_2253038_-	hypothetical protein	NA	A0A1L2C9A6	Pseudomonas_phage	37.3	8.7e-08
WP_064614140.1|2253122_2253311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614141.1|2253307_2254168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614142.1|2254185_2254911_-	hypothetical protein	NA	A0A2H5BFW5	Vibrio_phage	49.4	9.8e-56
WP_064614143.1|2254907_2255153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082916881.1|2255216_2255816_-	hypothetical protein	NA	A0A142IEV5	Pseudomonas_phage	51.0	5.1e-50
WP_064614144.1|2256190_2256742_-	hypothetical protein	NA	A0A2H4JAQ1	uncultured_Caudovirales_phage	55.6	5.2e-09
WP_064614145.1|2256984_2257533_-	single-stranded DNA-binding protein	NA	I3PGW4	Xanthomonas_phage	53.8	1.1e-46
WP_064614146.1|2257541_2258213_-	3'-5' exonuclease	NA	A0A059VJT9	Pseudomonas_phage	69.1	1.1e-90
WP_064614147.1|2258209_2259076_-	ATP-binding protein	NA	A0A1B1P9H8	Acinetobacter_phage	60.6	1.4e-72
WP_156747519.1|2259086_2259233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015269564.1|2259353_2259548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064491400.1|2259544_2259775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064491401.1|2259771_2260026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614148.1|2260046_2260232_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_156747520.1|2260228_2260615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614150.1|2260886_2261081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614151.1|2261107_2261674_-	hypothetical protein	NA	J7I0S5	Pseudomonas_phage	56.0	4.3e-59
WP_064614152.1|2261752_2262271_-	hypothetical protein	NA	A0A059VFZ8	Pseudomonas_phage	64.7	8.8e-59
>prophage 7
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	2266240	2322962	6178825	integrase,head,terminase,coat	Pseudomonas_phage(57.78%)	72	2268784:2268798	2309668:2309682
WP_082916882.1|2266240_2266681_-	hypothetical protein	NA	A0A2H4J0L8	uncultured_Caudovirales_phage	95.2	5.9e-80
WP_082916883.1|2266684_2267479_-	LexA family transcriptional regulator	NA	A0A2H4J0J9	uncultured_Caudovirales_phage	53.0	1.6e-38
WP_045195692.1|2267595_2267793_+	helix-turn-helix domain-containing protein	NA	A0A2H4JF66	uncultured_Caudovirales_phage	56.7	2.3e-12
WP_064614161.1|2267824_2268013_+	hypothetical protein	NA	B5WZX7	Pseudomonas_phage	56.5	1.9e-11
WP_064614162.1|2268031_2268211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_156747538.1|2268304_2269162_+	transporter	NA	Q8W644	Enterobacteria_phage	43.4	1.9e-50
2268784:2268798	attL	CGAGGCCCAGGCCAA	NA	NA	NA	NA
WP_064614164.1|2269158_2269641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064614165.1|2269637_2269874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064614166.1|2269870_2270647_+	hypothetical protein	NA	A0A2H4J580	uncultured_Caudovirales_phage	60.0	1.1e-25
WP_064614167.1|2270643_2271405_+	Replication protein P	NA	A0A2D1GNB3	Pseudomonas_phage	60.1	3.0e-71
WP_156747521.1|2271404_2271554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064614168.1|2271550_2271778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064614169.1|2271777_2272275_+	ead/Ea22-like family protein	NA	A0A1S5R3Q7	Pseudomonas_phage	61.7	1.7e-11
WP_064614170.1|2272267_2272735_+	recombination protein NinB	NA	A0A0H5AUD0	Pseudomonas_phage	79.4	1.1e-65
WP_177342671.1|2272731_2273298_+	HNH endonuclease	NA	A0A1W6JIP2	Lactococcus_phage	35.4	2.0e-19
WP_156747522.1|2273465_2273606_+	hypothetical protein	NA	A0A2H4J249	uncultured_Caudovirales_phage	77.4	6.8e-06
WP_064614173.1|2273596_2273899_+	DUF1364 family protein	NA	A0A2K8HR56	Pseudomonas_phage	50.0	2.5e-21
WP_064614174.1|2273895_2274255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_177342672.1|2274251_2274398_+	hypothetical protein	NA	A0A2H4J3D6	uncultured_Caudovirales_phage	91.7	8.9e-17
WP_064614175.1|2274394_2274940_+	hypothetical protein	NA	A0A0H5AWB8	Pseudomonas_phage	63.1	8.7e-57
WP_012273046.1|2275459_2275783_+	hypothetical protein	NA	A0A1B0VME9	Pseudomonas_phage	89.7	1.5e-43
WP_012273045.1|2275784_2276048_+	hypothetical protein	NA	A0A1B0VME7	Pseudomonas_phage	72.9	5.7e-30
WP_012273044.1|2276098_2276263_+	hypothetical protein	NA	A0A2H4J789	uncultured_Caudovirales_phage	74.1	1.4e-18
WP_016487771.1|2276259_2276712_+	proteasome subunit beta	NA	A0A2H4J821	uncultured_Caudovirales_phage	99.3	1.4e-73
WP_042914374.1|2276686_2277310_+	hypothetical protein	NA	A0A1B0VRJ1	Pseudomonas_phage	71.5	5.4e-87
WP_064614176.1|2277341_2277818_+	DUF2280 domain-containing protein	NA	A0A0S2SY97	Pseudomonas_phage	70.4	2.1e-46
WP_064614177.1|2277789_2279091_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	59.5	2.1e-149
WP_064614178.1|2279099_2280518_+	DUF4055 domain-containing protein	NA	A0A2H4J5M6	uncultured_Caudovirales_phage	37.2	1.7e-72
WP_064614179.1|2280518_2281565_+|head	phage head morphogenesis protein	head	A0A1B0VMF3	Pseudomonas_phage	32.1	1.3e-40
WP_060489630.1|2281682_2282402_+	hypothetical protein	NA	A0A2H4J0Y0	uncultured_Caudovirales_phage	61.7	7.0e-38
WP_064614180.1|2282412_2283360_+	Ig domain-containing protein	NA	A0A1B0VMF8	Pseudomonas_phage	69.4	1.1e-126
WP_064614181.1|2283403_2284021_+	hypothetical protein	NA	A0A1B0VMF7	Pseudomonas_phage	38.8	3.1e-26
WP_064614182.1|2284060_2284453_+	hypothetical protein	NA	A0A0H5AUF0	Pseudomonas_phage	33.1	2.5e-05
WP_064614183.1|2284455_2284839_+	hypothetical protein	NA	A0A059VA70	Pseudomonas_phage	55.2	2.6e-31
WP_060489621.1|2284838_2285219_+	hypothetical protein	NA	A0A059VF88	Pseudomonas_phage	57.0	6.5e-35
WP_019751367.1|2285215_2285638_+	hypothetical protein	NA	A0A059VK45	Pseudomonas_phage	61.4	2.9e-44
WP_064614184.1|2285703_2286867_+	Ig domain-containing protein	NA	A0A059VG08	Pseudomonas_phage	71.3	1.4e-120
WP_064614185.1|2286945_2287407_+	hypothetical protein	NA	A0A059VF34	Pseudomonas_phage	52.3	8.5e-37
WP_082916884.1|2287466_2287682_+	hypothetical protein	NA	A0A059VJS3	Pseudomonas_phage	50.0	2.2e-11
WP_064614187.1|2287706_2288243_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_082916885.1|2288382_2288550_+	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_064614188.1|2288527_2289514_+	ORF6N domain-containing protein	NA	A0A2L1IV98	Escherichia_phage	50.8	4.9e-26
WP_054830722.1|2289510_2290011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054830723.1|2290101_2290386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060489602.1|2290421_2290745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064614189.1|2290806_2294994_+	tape measure protein	NA	A0A059VJZ1	Pseudomonas_phage	38.4	1.1e-138
WP_064614190.1|2295015_2295438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064614191.1|2295425_2295641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054882207.1|2295775_2296228_+	hypothetical protein	NA	A0A286S298	Klebsiella_phage	44.3	6.1e-32
WP_064614192.1|2296224_2296704_+	DUF1833 family protein	NA	J7I404	Pseudomonas_phage	41.4	1.3e-24
WP_064614193.1|2296706_2297114_+	hypothetical protein	NA	B5WZT7	Pseudomonas_phage	46.3	1.1e-24
WP_064614194.1|2297079_2300136_+	hypothetical protein	NA	B5WZT8	Pseudomonas_phage	42.1	1.0e-223
WP_064614195.1|2300192_2302442_+	hypothetical protein	NA	A0A0H5ARL8	Pseudomonas_phage	47.1	3.8e-29
WP_064614196.1|2303128_2303617_+	glycoside hydrolase family 104 protein	NA	Q9MC90	Pseudomonas_phage	63.6	2.2e-51
WP_064614197.1|2303613_2304141_+	DUF2514 family protein	NA	NA	NA	NA	NA
WP_064614198.1|2304118_2305309_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	95.1	9.3e-213
WP_004573881.1|2305545_2306625_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003250340.1|2306844_2307153_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003250344.1|2307152_2307467_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_010953307.1|2307467_2308136_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_014861827.1|2308132_2309452_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_019752037.1|2309734_2310889_+	HPP family protein	NA	NA	NA	NA	NA
2309668:2309682	attR	CGAGGCCCAGGCCAA	NA	NA	NA	NA
WP_004573884.1|2310862_2311729_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_064614199.1|2311909_2313799_+	propionyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	29.3	6.3e-54
WP_054888665.1|2314024_2315095_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003250356.1|2315227_2315470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014753816.1|2315922_2318310_-	response regulator	NA	Q8QNA2	Ectocarpus_siliculosus_virus	28.6	1.9e-10
WP_003250360.1|2318323_2318785_-	response regulator	NA	NA	NA	NA	NA
WP_004575754.1|2318800_2321047_-	GAF domain-containing protein	NA	Q8QNA6	Ectocarpus_siliculosus_virus	22.8	1.9e-20
WP_033725550.1|2321315_2321843_+|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_012052961.1|2321873_2322410_+|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
WP_060537680.1|2322428_2322962_+|coat	spore coat protein U domain-containing protein	coat	NA	NA	NA	NA
>prophage 8
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	2893952	2943602	6178825	transposase,plate,protease	Serratia_phage(40.0%)	42	NA	NA
WP_019751711.1|2893952_2894432_-|protease	serine protease inhibitor ecotin	protease	NA	NA	NA	NA
WP_060544984.1|2894487_2895258_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_064614352.1|2895268_2896660_-	GntP family permease	NA	NA	NA	NA	NA
WP_003248302.1|2896885_2898268_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_019751708.1|2898327_2899344_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003248306.1|2899343_2900402_-	microcin C ABC transporter permease YejB	NA	NA	NA	NA	NA
WP_177342675.1|2900398_2902327_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003248318.1|2902340_2902622_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_003248320.1|2902702_2903764_-	3-deoxy-7-phosphoheptulonate synthase	NA	A0A1Z1LZD8	Serratia_phage	48.6	5.1e-85
WP_003248323.1|2904318_2904870_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003248325.1|2904919_2905228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003248327.1|2905309_2906608_-	MFS transporter	NA	NA	NA	NA	NA
WP_060537984.1|2907035_2907911_+	AEC family transporter	NA	NA	NA	NA	NA
WP_064614356.1|2907956_2910473_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	35.0	4.3e-159
WP_004576643.1|2910640_2911726_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_003248334.1|2911821_2912340_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_064614358.1|2912483_2914979_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_003248338.1|2914975_2915884_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA	NA
WP_064614360.1|2915880_2919684_-	ImcF-like family protein	NA	NA	NA	NA	NA
WP_003248342.1|2919714_2920431_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_003248343.1|2920427_2921771_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_003248345.1|2921767_2922490_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_064614361.1|2922514_2925112_-	type VI secretion system ATPase TssH	NA	A0A223W0B1	Agrobacterium_phage	30.8	2.2e-89
WP_003248350.1|2925108_2926179_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_004576637.1|2926142_2927963_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_003248355.1|2927962_2928445_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_003248356.1|2928471_2929974_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_003248358.1|2929988_2930528_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_028697263.1|2930592_2931342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_177342676.1|2931630_2931789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064614365.1|2931935_2932487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060544990.1|2932790_2933906_+	ADP-ribosylglycohydrolase family protein	NA	A0A1S6UB21	Serratia_phage	44.6	3.6e-57
WP_060544991.1|2934188_2934452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003248379.1|2935736_2936435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003248386.1|2936826_2937138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079732522.1|2937547_2937937_-	reverse transcriptase	NA	NA	NA	NA	NA
WP_003248391.1|2938397_2938694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_054888840.1|2938690_2939623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019751687.1|2940377_2940626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003248396.1|2940788_2941805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003248399.1|2941805_2942501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011911495.1|2942573_2943602_+|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
>prophage 9
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	3567547	3577823	6178825		uncultured_Caudovirales_phage(44.44%)	14	NA	NA
WP_003254012.1|3567547_3568039_+	DUF1543 domain-containing protein	NA	A0A2I2L4Z6	Orpheovirus	36.7	1.0e-24
WP_054888225.1|3568117_3568888_+	SDR family NAD(P)-dependent oxidoreductase	NA	Q56AQ6	Bacillus_thuringiensis_phage	41.5	1.1e-41
WP_003254014.1|3568983_3569676_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_029380592.1|3569768_3570308_+	type 1 glutamine amidotransferase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	34.9	9.9e-21
WP_003254017.1|3570364_3570889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004576506.1|3571083_3571941_+	glucose 1-dehydrogenase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	50.9	2.0e-71
WP_003254020.1|3572228_3572456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019751183.1|3572535_3572709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003254021.1|3572921_3573269_+	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	61.9	1.0e-34
WP_004576505.1|3573290_3574574_+	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	75.1	4.1e-174
WP_054888223.1|3574601_3575072_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	69.0	1.7e-56
WP_004576503.1|3575085_3575787_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	78.9	4.2e-104
WP_064614767.1|3575799_3577164_-	sensor histidine kinase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_064614768.1|3577160_3577823_-	response regulator	NA	W8CYM9	Bacillus_phage	36.7	1.6e-28
>prophage 10
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	3637485	3691888	6178825	transposase,plate	Bacillus_phage(28.57%)	47	NA	NA
WP_085983016.1|3637485_3638839_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	54.4	6.5e-77
WP_003254107.1|3639044_3639605_+	PQQ-dependent catabolism-associated CXXCW motif protein	NA	NA	NA	NA	NA
WP_003254108.1|3639659_3640325_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_064614781.1|3640370_3642269_-	PAS domain-containing sensor histidine kinase	NA	A0A2K9L5I4	Tupanvirus	27.2	2.4e-13
WP_003254110.1|3642237_3643401_-	FIST C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010953581.1|3643541_3644729_-	porin	NA	NA	NA	NA	NA
WP_003254112.1|3645121_3645721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004574211.1|3645720_3646419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029380586.1|3646513_3647332_-	phosphate ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003254119.1|3647349_3648243_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_004574212.1|3648239_3649208_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_054889538.1|3649278_3650310_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A1D7SRJ6	Cyanophage	38.1	6.5e-53
WP_014753437.1|3650626_3650860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614782.1|3650931_3651357_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_064614783.1|3651353_3651668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060546585.1|3651774_3652593_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_054889533.1|3652582_3653368_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_064614784.1|3653506_3654850_-	MFS transporter	NA	NA	NA	NA	NA
WP_064614785.1|3654894_3656037_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010953569.1|3656179_3657121_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033726377.1|3657214_3657673_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_064614786.1|3657798_3658515_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_029380584.1|3658511_3658814_+	AzlD family protein	NA	NA	NA	NA	NA
WP_064615238.1|3658973_3659849_+	universal stress protein	NA	NA	NA	NA	NA
WP_064614787.1|3660141_3661368_+	MFS transporter	NA	NA	NA	NA	NA
WP_003254146.1|3661468_3661846_-	DUF2493 domain-containing protein	NA	NA	NA	NA	NA
WP_064614788.1|3661867_3664582_-	magnesium-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	23.4	7.7e-37
WP_012052060.1|3665323_3666949_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	36.1	1.4e-49
WP_047603015.1|3667219_3668716_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_060538218.1|3668716_3670483_+	NAD(P)H dependent flavin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_004574226.1|3670555_3671014_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003254155.1|3671167_3672034_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_064614790.1|3673111_3674575_-	peptidase	NA	NA	NA	NA	NA
WP_177342683.1|3674723_3674879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004574230.1|3674877_3676731_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.0	1.7e-35
WP_054889526.1|3676808_3680426_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_014859253.1|3680422_3681886_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_177331243.1|3681873_3682524_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_011911495.1|3682568_3683597_-|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_033725935.1|3683966_3684470_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_003254167.1|3684487_3685978_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_060538223.1|3685974_3686385_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_060538224.1|3686388_3688155_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_060538225.1|3688118_3689135_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_003254171.1|3689131_3689701_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_014753483.1|3689697_3690495_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_064614791.1|3690550_3691888_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
>prophage 11
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	3983253	3991926	6178825	tRNA	uncultured_Caudovirales_phage(75.0%)	11	NA	NA
WP_003251184.1|3983253_3983925_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	91.0	2.1e-105
WP_162996115.1|3984072_3984249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003251186.1|3984239_3985619_+	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	51.1	1.6e-27
WP_003251188.1|3985714_3986107_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	79.8	1.1e-53
WP_003251191.1|3986108_3986468_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	66.7	1.1e-36
WP_003251193.1|3986467_3986764_+	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	58.6	2.0e-23
WP_003251195.1|3986760_3987096_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	75.7	5.7e-43
WP_064614859.1|3987092_3988094_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	80.2	2.3e-156
WP_004576098.1|3988188_3989148_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_064614860.1|3989253_3990645_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_014859311.1|3990645_3991926_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.5	2.5e-94
>prophage 12
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	4724199	4765949	6178825	transposase	Escherichia_phage(37.5%)	28	NA	NA
WP_003117291.1|4724199_4725180_+|transposase	IS5-like element ISPa41 family transposase	transposase	Q38213	Escherichia_phage	59.2	1.9e-102
WP_156747528.1|4725476_4727294_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	37.6	5.2e-29
WP_003117291.1|4727376_4728357_+|transposase	IS5-like element ISPa41 family transposase	transposase	Q38213	Escherichia_phage	59.2	1.9e-102
WP_156747529.1|4728328_4728739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064614982.1|4729323_4730280_-	radical SAM protein	NA	NA	NA	NA	NA
WP_046816056.1|4730269_4731250_-	XdhC family protein	NA	NA	NA	NA	NA
WP_003117291.1|4732180_4733161_-|transposase	IS5-like element ISPa41 family transposase	transposase	Q38213	Escherichia_phage	59.2	1.9e-102
WP_135846678.1|4733737_4734031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052760631.1|4734343_4734562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_135848051.1|4737123_4737243_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_064614984.1|4737532_4738798_-	OprD family porin	NA	NA	NA	NA	NA
WP_013973875.1|4739292_4740627_-	MFS transporter	NA	NA	NA	NA	NA
WP_082916918.1|4740739_4741918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080956996.1|4741914_4742748_-	FAD binding domain-containing protein	NA	NA	NA	NA	NA
WP_046816054.1|4742747_4745090_-	xanthine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_035834956.1|4746488_4747994_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	54.3	8.3e-150
WP_013973878.1|4749639_4751064_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_044040031.1|4751056_4752472_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011911495.1|4752570_4753599_+|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_011911495.1|4754040_4755069_+|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_156747530.1|4755057_4755210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013973880.1|4755241_4756690_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_024087621.1|4756750_4757263_-	RidA family protein	NA	NA	NA	NA	NA
WP_047934606.1|4757893_4759390_-	PucR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013973882.1|4759451_4760684_-	amino acid permease	NA	NA	NA	NA	NA
WP_013973883.1|4760732_4761080_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_013973884.1|4761091_4762498_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011911495.1|4764920_4765949_-|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
>prophage 13
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	5039691	5047469	6178825		Planktothrix_phage(16.67%)	10	NA	NA
WP_003255127.1|5039691_5040501_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.5	7.7e-25
WP_003255128.1|5040748_5041723_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.8	1.0e-36
WP_003255129.1|5041735_5042260_+	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	48.1	6.9e-27
WP_004574491.1|5042268_5042841_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003255131.1|5042827_5043352_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003255132.1|5043352_5044078_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.5	8.4e-23
WP_003255133.1|5044253_5045747_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003255135.1|5045826_5046135_+	ribosome-associated translation inhibitor RaiA	NA	A0A0M7QH33	Escherichia_phage	34.1	4.4e-05
WP_003255137.1|5046147_5046612_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_064615021.1|5046614_5047469_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	32.8	2.4e-08
>prophage 14
NZ_CP011525	Pseudomonas sp. JY-Q chromosome, complete genome	6178825	5764657	5812500	6178825	holin,transposase,protease	uncultured_Caudovirales_phage(28.57%)	40	NA	NA
WP_014860930.1|5764657_5765158_-|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
WP_064615096.1|5765339_5766227_+	acyltransferase	NA	NA	NA	NA	NA
WP_004576361.1|5766312_5766888_-	DUF2780 domain-containing protein	NA	NA	NA	NA	NA
WP_082916931.1|5767100_5768033_+	RHS repeat-associated core domain-containing protein	NA	B6SD27	Bacteriophage	41.0	4.1e-22
WP_003255673.1|5768228_5769428_-	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	28.5	3.8e-12
WP_003255675.1|5769726_5770584_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_003255677.1|5770595_5771228_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA	NA
WP_003255678.1|5771302_5774317_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA	NA
WP_003255679.1|5774313_5774649_-	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_003255680.1|5774663_5775914_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003255681.1|5775929_5777183_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	2.3e-100
WP_003255682.1|5777521_5778562_+	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_003255683.1|5778596_5780534_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.1	2.4e-16
WP_003255684.1|5781038_5781341_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003255686.1|5781337_5781568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003255688.1|5781834_5783460_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	44.5	1.9e-70
WP_003255691.1|5783568_5784669_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA	NA
WP_003255692.1|5784964_5786257_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA	NA
WP_003255694.1|5787746_5788517_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
WP_004575951.1|5788527_5789760_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_004575952.1|5789759_5791712_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA	NA
WP_003255697.1|5791890_5793951_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA	NA
WP_003255698.1|5793966_5794497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003255700.1|5794573_5795551_-	dipeptidase	NA	NA	NA	NA	NA
WP_003255702.1|5795836_5796253_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_003255705.1|5796391_5797084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003255706.1|5797155_5797773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033726540.1|5797776_5798724_-	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_003255708.1|5798868_5799813_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_003255710.1|5799935_5800820_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA	NA
WP_064615098.1|5800838_5801804_+	L-carnitine dehydrogenase	NA	NA	NA	NA	NA
WP_003255713.1|5801814_5802285_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_011911495.1|5802553_5803582_+|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.2	5.9e-46
WP_064615099.1|5803570_5805253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003255717.1|5805641_5805899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003255719.1|5806018_5807125_-	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_003255722.1|5807618_5808995_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_003255724.1|5809447_5810395_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_172830946.1|5810476_5811325_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_003255727.1|5811321_5812500_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	36.7	5.0e-25
