assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001663795.1_ASM166379v1	NZ_CP016026	Streptococcus thermophilus strain KLDS SM, complete genome	1	199829-200087	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	Type III-B,Type III-C,Type III-D,Type III-A	GATATAAACCTAATTACCTCGAGAGGGGACGGAAACCC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC	38,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	2,3,3	3	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	NA|85aa|up_9|NZ_CP016026.1_187668_187923_+,NA|77aa|down_9|NZ_CP016026.1_211894_212125_+	NA|85aa|up_9|NZ_CP016026.1_187668_187923_+	NA	NA|255aa|up_8|NZ_CP016026.1_188718_189483_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|212aa|up_7|NZ_CP016026.1_189544_190180_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|89aa|up_6|NZ_CP016026.1_191148_191415_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|553aa|up_5|NZ_CP016026.1_193106_194765_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|183aa|up_4|NZ_CP016026.1_195697_196246_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|268aa|up_3|NZ_CP016026.1_196486_197290_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|NZ_CP016026.1_197308_198256_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|335aa|up_1|NZ_CP016026.1_198394_199399_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|NZ_CP016026.1_199398_199728_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|NZ_CP016026.1_200216_200948_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|759aa|down_1|NZ_CP016026.1_200928_203205_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|127aa|down_2|NZ_CP016026.1_203208_203589_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|NZ_CP016026.1_203588_204251_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|NZ_CP016026.1_204252_205152_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|NZ_CP016026.1_205154_206228_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|232aa|down_6|NZ_CP016026.1_207223_207919_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_7|NZ_CP016026.1_208008_208638_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|484aa|down_8|NZ_CP016026.1_209335_210787_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|77aa|down_9|NZ_CP016026.1_211894_212125_+	NA
GCF_001663795.1_ASM166379v1	NZ_CP016026	Streptococcus thermophilus strain KLDS SM, complete genome	2	269742-270504	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	Type I-E	GGATCACCCCCGCGTGTGCGGGAAAAAC,GGATCACCCCCGCGTGTGCGGGAAAAAC,GGATCACCCCCGCGTGTGCGGGAAAAAC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	12,12,12	12	TypeI-E	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	NA|33aa|up_5|NZ_CP016026.1_256416_256515_-,NA	NA|349aa|up_9|NZ_CP016026.1_252324_253371_-	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|252aa|up_8|NZ_CP016026.1_253382_254138_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|323aa|up_7|NZ_CP016026.1_254134_255103_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|318aa|up_6|NZ_CP016026.1_255099_256053_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|33aa|up_5|NZ_CP016026.1_256416_256515_-	NA	NA|90aa|up_4|NZ_CP016026.1_256551_256821_-	pfam18033, SpuA_C, SpuA C-terminal	NA|585aa|up_3|NZ_CP016026.1_261291_263046_-	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|463aa|up_2|NZ_CP016026.1_263216_264605_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|333aa|up_1|NZ_CP016026.1_264762_265761_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|324aa|up_0|NZ_CP016026.1_265785_266757_-	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	DEDDh|302aa|down_0|NZ_CP016026.1_270524_271430_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|314aa|down_1|NZ_CP016026.1_271431_272373_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|213aa|down_2|NZ_CP016026.1_272376_273015_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|down_3|NZ_CP016026.1_273019_273745_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|356aa|down_4|NZ_CP016026.1_273758_274826_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|198aa|down_5|NZ_CP016026.1_274815_275409_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|556aa|down_6|NZ_CP016026.1_275418_277086_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|927aa|down_7|NZ_CP016026.1_277072_279853_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|648aa|down_8|NZ_CP016026.1_280149_282093_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|423aa|down_9|NZ_CP016026.1_282167_283436_-	PRK09357, pyrC, dihydroorotase; Validated
GCF_001663795.1_ASM166379v1	NZ_CP016026	Streptococcus thermophilus strain KLDS SM, complete genome	3	683810-684637	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	Type II-B,Type II-C,Type II-A	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	12,12,12	12	TypeII-B,TypeII-C,TypeII-A	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	NA|66aa|up_7|NZ_CP016026.1_677520_677718_-,NA|148aa|up_4|NZ_CP016026.1_680602_681046_-,NA|80aa|up_0|NZ_CP016026.1_683486_683726_-,NA	NA|737aa|up_9|NZ_CP016026.1_674498_676709_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|up_8|NZ_CP016026.1_676708_677449_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|66aa|up_7|NZ_CP016026.1_677520_677718_-	NA	NA|438aa|up_6|NZ_CP016026.1_677884_679198_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_5|NZ_CP016026.1_679291_679420_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|148aa|up_4|NZ_CP016026.1_680602_681046_-	NA	NA|128aa|up_3|NZ_CP016026.1_681076_681460_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|NZ_CP016026.1_682148_682391_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|NZ_CP016026.1_682558_683449_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|NZ_CP016026.1_683486_683726_-	NA	csn2|220aa|down_0|NZ_CP016026.1_684958_685618_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP016026.1_685607_685952_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP016026.1_685948_686818_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|NZ_CP016026.1_686817_690984_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|NZ_CP016026.1_691316_691964_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|NZ_CP016026.1_692075_693800_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|NZ_CP016026.1_693896_695849_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|202aa|down_7|NZ_CP016026.1_695849_696455_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|NZ_CP016026.1_696495_697191_-	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|125aa|down_9|NZ_CP016026.1_697183_697558_-	pfam03788, LrgA, LrgA family
GCF_001663795.1_ASM166379v1	NZ_CP016026	Streptococcus thermophilus strain KLDS SM, complete genome	4	900062-900153	4	CRISPRCasFinder	no	cas3	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	NA|87aa|up_3|NZ_CP016026.1_895677_895938_-,NA|143aa|down_7|NZ_CP016026.1_906055_906484_-	cas3|673aa|up_9|NZ_CP016026.1_887127_889146_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|NZ_CP016026.1_889274_890378_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|NZ_CP016026.1_890398_890758_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|NZ_CP016026.1_890761_891793_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|NZ_CP016026.1_891890_892922_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|850aa|up_4|NZ_CP016026.1_892945_895495_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|87aa|up_3|NZ_CP016026.1_895677_895938_-	NA	NA|316aa|up_2|NZ_CP016026.1_896024_896972_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|NZ_CP016026.1_897037_897931_-	pfam00480, ROK, ROK family	NA|634aa|up_0|NZ_CP016026.1_898115_900017_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|NZ_CP016026.1_900265_901708_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|NZ_CP016026.1_901716_902682_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|NZ_CP016026.1_902771_903206_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|NZ_CP016026.1_903198_903588_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|NZ_CP016026.1_903658_904219_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|NZ_CP016026.1_904331_904787_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|NZ_CP016026.1_904805_905867_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|NZ_CP016026.1_906055_906484_-	NA	NA|198aa|down_8|NZ_CP016026.1_906528_907122_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|130aa|down_9|NZ_CP016026.1_907090_907480_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
GCF_001663795.1_ASM166379v1	NZ_CP016026	Streptococcus thermophilus strain KLDS SM, complete genome	5	1806995-1809141	5,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	Type II-B,Type II-C,Type II-A	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36	0	0	NA	NA	NA:NA:NA	32,32,29	32	TypeII-B,TypeII-C,TypeII-A	DinG,cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csn2,cas9,csa3	NA|121aa|up_5|NZ_CP016026.1_1798667_1799030_+,NA	NA|76aa|up_9|NZ_CP016026.1_1793550_1793778_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|77aa|up_8|NZ_CP016026.1_1795127_1795358_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|131aa|up_7|NZ_CP016026.1_1797521_1797914_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|121aa|up_6|NZ_CP016026.1_1797910_1798273_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|121aa|up_5|NZ_CP016026.1_1798667_1799030_+	NA	NA|204aa|up_4|NZ_CP016026.1_1800236_1800848_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|NZ_CP016026.1_1801103_1804469_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NZ_CP016026.1_1804645_1805557_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NZ_CP016026.1_1805558_1805882_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NZ_CP016026.1_1805878_1806931_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NZ_CP016026.1_1809182_1809998_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|NZ_CP016026.1_1809997_1810900_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NZ_CP016026.1_1811263_1813396_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NZ_CP016026.1_1813382_1813823_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NZ_CP016026.1_1813888_1814152_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NZ_CP016026.1_1814281_1815211_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NZ_CP016026.1_1815210_1816002_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NZ_CP016026.1_1816124_1816523_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|NZ_CP016026.1_1816535_1816976_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NZ_CP016026.1_1816996_1817293_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
