The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013580	Rhizobium phaseoli strain N261 chromosome, complete genome	4458726	1562288	1571270	4458726	transposase	Indivirus(16.67%)	8	NA	NA
WP_064817896.1|1562288_1563692_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.5	4.6e-33
WP_064817897.1|1563691_1564303_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.6	2.0e-17
WP_064817898.1|1564399_1565602_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_064817899.1|1565887_1566757_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.5	1.2e-95
WP_064817900.1|1566766_1567654_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_064817901.1|1567657_1568713_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.5	1.8e-95
WP_064817902.1|1568719_1569298_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	44.3	6.0e-32
WP_064817903.1|1569287_1571270_-	glycosyltransferase family 1 protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	36.4	8.8e-06
>prophage 2
NZ_CP013580	Rhizobium phaseoli strain N261 chromosome, complete genome	4458726	1977405	1990502	4458726	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_064819403.1|1977405_1978419_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.8e-24
WP_029531141.1|1978437_1979295_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	3.6e-33
WP_064818073.1|1979291_1979996_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	48.2	8.7e-41
WP_003558879.1|1980177_1980369_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	5.8e-08
WP_064818074.1|1980420_1981047_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_004678862.1|1981043_1981871_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	6.8e-53
WP_064818075.1|1981967_1983251_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	2.2e-98
WP_004678859.1|1983255_1984029_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	1.8e-23
WP_004678857.1|1984025_1984679_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.7	6.8e-16
WP_064818076.1|1984818_1986408_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	30.0	2.9e-12
WP_064818077.1|1986493_1987366_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_064818078.1|1987569_1987917_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.2	4.1e-12
WP_064818079.1|1987961_1990502_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	50.2	4.3e-58
>prophage 3
NZ_CP013580	Rhizobium phaseoli strain N261 chromosome, complete genome	4458726	2051164	2100529	4458726	protease,transposase,capsid,lysis	Rhizobium_phage(11.11%)	50	NA	NA
WP_064818120.1|2051164_2052139_+|capsid	phage major capsid protein	capsid	Q94MS1	Myxococcus_phage	52.0	1.8e-84
WP_064818121.1|2052163_2052949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818122.1|2053017_2053578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818123.1|2053593_2054292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818124.1|2054288_2056112_+	hypothetical protein	NA	H2EIB6	Brucella_phage	28.8	2.8e-51
WP_064818125.1|2056108_2056507_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_064818126.1|2057305_2059714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818127.1|2059713_2061735_+	hypothetical protein	NA	M4QPL5	Sulfitobacter_phage	34.0	1.5e-45
WP_064818128.1|2062006_2063362_+	hypothetical protein	NA	L7TMF7	Rhizobium_phage	57.2	1.4e-79
WP_064818129.1|2063361_2063718_+	hypothetical protein	NA	A0A0F6WBI7	Sinorhizobium_phage	46.8	4.1e-15
WP_064818130.1|2063714_2064143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818131.1|2064168_2064366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818132.1|2064355_2064820_+	lysozyme	NA	F4YCN5	Synechococcus_phage	42.7	3.1e-23
WP_064818133.1|2064819_2065182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064819407.1|2065186_2065414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818134.1|2065410_2067003_+	hypothetical protein	NA	L7TKC4	Rhizobium_phage	39.9	3.5e-82
WP_064818135.1|2067010_2067439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818136.1|2067605_2068514_+	hypothetical protein	NA	A0A1R3Y6Z6	Salmonella_virus	38.7	8.2e-52
WP_064818137.1|2068587_2068962_-	thermonuclease family protein	NA	G8DH70	Emiliania_huxleyi_virus	48.7	1.1e-23
WP_064818138.1|2069365_2069602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818139.1|2069795_2070152_+	response regulator	NA	NA	NA	NA	NA
WP_064818141.1|2070676_2071411_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	36.0	5.9e-32
WP_077994580.1|2071410_2072910_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_037138513.1|2073330_2075166_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA	NA
WP_064818143.1|2075921_2076377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818144.1|2076560_2076872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037138522.1|2077021_2077462_-	DUF3597 domain-containing protein	NA	NA	NA	NA	NA
WP_064819408.1|2077952_2078585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818145.1|2078647_2079421_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	1.6e-32
WP_064818146.1|2079456_2080602_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_064818147.1|2080603_2081806_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_012483657.1|2081899_2082925_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.1	2.6e-78
WP_004675929.1|2083277_2084468_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_064818148.1|2084504_2085653_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_004675927.1|2085681_2085927_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_064818149.1|2086085_2086871_+	alpha/beta hydrolase	NA	A0A023W7H4	Mycobacterium_phage	30.3	3.5e-06
WP_004675925.1|2086999_2087833_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_010021897.1|2087972_2088176_+	DUF3126 family protein	NA	NA	NA	NA	NA
WP_004675924.1|2088449_2088821_+	phasin family protein	NA	NA	NA	NA	NA
WP_012483661.1|2089097_2089451_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.1	1.7e-13
WP_037138550.1|2089461_2091951_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	9.8e-172
WP_085994805.1|2092105_2093053_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	22.6	5.5e-14
WP_037138553.1|2093078_2093504_-	HIT family protein	NA	NA	NA	NA	NA
WP_064818150.1|2093617_2094808_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_016732944.1|2094885_2095605_-	glycerophosphodiester phosphodiesterase	NA	A0A1J0F961	Only_Syngen_Nebraska_virus	27.5	6.0e-13
WP_004678601.1|2095601_2096072_-	RidA family protein	NA	NA	NA	NA	NA
WP_064818151.1|2096208_2097045_+	cell envelope integrity EipB family protein	NA	NA	NA	NA	NA
WP_064818152.1|2097244_2098321_+	toxic anion resistance protein	NA	H6X3X9	Enterobacteria_phage	22.9	7.1e-10
WP_064819409.1|2098335_2099904_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064818153.1|2099911_2100529_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
>prophage 4
NZ_CP013580	Rhizobium phaseoli strain N261 chromosome, complete genome	4458726	2248799	2259076	4458726		uncultured_Mediterranean_phage(83.33%)	9	NA	NA
WP_064818223.1|2248799_2251721_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.2	0.0e+00
WP_004671899.1|2252003_2252519_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	72.9	1.2e-44
WP_004671901.1|2252621_2253269_-	MarC family protein	NA	NA	NA	NA	NA
WP_064818224.1|2253506_2256329_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	6.1e-77
WP_003539654.1|2256755_2256911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818225.1|2257053_2257332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818226.1|2257412_2257907_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.8	4.7e-25
WP_004671914.1|2257965_2258538_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.2	7.5e-43
WP_004671916.1|2258566_2259076_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	1.2e-44
>prophage 5
NZ_CP013580	Rhizobium phaseoli strain N261 chromosome, complete genome	4458726	3227904	3289109	4458726	tRNA,holin,protease,transposase	Bacillus_phage(25.0%)	58	NA	NA
WP_064818722.1|3227904_3228636_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_004680128.1|3229099_3229411_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
WP_010031314.1|3229740_3230844_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_064818723.1|3230863_3231952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818724.1|3232150_3232639_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_064818725.1|3232635_3233103_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_004680123.1|3233126_3233669_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.9	7.1e-35
WP_004680117.1|3233932_3234817_-	cytochrome c1	NA	NA	NA	NA	NA
WP_004680115.1|3234842_3236123_-	cytochrome b N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012484665.1|3236137_3236716_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_064818726.1|3237002_3237935_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_064818727.1|3237890_3239804_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.2	3.0e-27
WP_012484668.1|3239965_3240196_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_064819458.1|3240288_3242145_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.7	3.2e-34
WP_064819459.1|3242529_3242991_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_064818728.1|3243186_3244833_+	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_004680100.1|3244836_3245094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818729.1|3245273_3246182_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_004680097.1|3246285_3246549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004680095.1|3246661_3246847_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_064818730.1|3246919_3248197_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A1B0V011	Roseobacter_phage	42.2	3.3e-46
WP_016733721.1|3248193_3248844_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_064818731.1|3248840_3249464_-	DUF1285 domain-containing protein	NA	NA	NA	NA	NA
WP_064818732.1|3249622_3250633_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_016733724.1|3250646_3251567_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_064818733.1|3251563_3254380_+	DUF4159 domain-containing protein	NA	NA	NA	NA	NA
WP_004671543.1|3254381_3256454_+	membrane protein	NA	NA	NA	NA	NA
WP_064818734.1|3256458_3256875_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_081279400.1|3256869_3257439_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_064817439.1|3258246_3259365_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_064818735.1|3259509_3260496_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010005628.1|3260502_3260982_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_037113980.1|3261052_3261961_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_004671557.1|3262118_3262679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004671559.1|3262864_3263374_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_037140570.1|3263375_3264218_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_064818736.1|3264403_3266128_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_064818737.1|3266472_3267672_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_004671567.1|3267862_3268447_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	37.9	7.4e-30
WP_064818738.1|3268675_3269455_+	DUF2076 domain-containing protein	NA	NA	NA	NA	NA
WP_004671571.1|3269592_3270057_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	48.8	2.5e-28
WP_064818739.1|3270056_3270971_-	CDF family cation efflux transporter EmfA	NA	NA	NA	NA	NA
WP_064818740.1|3271153_3271831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037113986.1|3271845_3272085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818741.1|3272205_3274395_-	anthranilate synthase	NA	NA	NA	NA	NA
WP_064818742.1|3274662_3276921_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_064818743.1|3277172_3278156_+	extensin family protein	NA	NA	NA	NA	NA
WP_081279374.1|3278243_3278471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004671584.1|3278449_3280129_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_004671586.1|3280284_3280815_+	TIGR00645 family protein	NA	NA	NA	NA	NA
WP_064818744.1|3280811_3281780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818745.1|3282087_3282813_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_037140592.1|3282936_3284067_-	DUF2333 family protein	NA	NA	NA	NA	NA
WP_064818746.1|3284201_3285275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004678102.1|3285345_3285948_-	thymidine kinase	NA	A0A0K2FHC3	Enterobacter_phage	55.8	1.6e-51
WP_064818747.1|3286183_3287140_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_004678106.1|3287214_3288060_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_012484702.1|3288056_3289109_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	31.8	9.6e-20
>prophage 6
NZ_CP013580	Rhizobium phaseoli strain N261 chromosome, complete genome	4458726	3999672	4010066	4458726		Mycobacterium_phage(25.0%)	9	NA	NA
WP_016737530.1|3999672_4000383_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	48.7	2.7e-50
WP_004677374.1|4000382_4000739_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_064819071.1|4000735_4001464_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.6	2.4e-41
WP_064819072.1|4001559_4002804_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	30.4	1.4e-14
WP_064819073.1|4002906_4003881_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	75.1	5.6e-139
WP_064819074.1|4004076_4006281_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	51.5	1.2e-210
WP_064819075.1|4006259_4006664_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A249Y1D6	Staphylococcus_phage	34.8	4.7e-07
WP_010068756.1|4006680_4006902_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	1.8e-16
WP_064819077.1|4007807_4010066_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.8	1.4e-124
>prophage 1
NZ_CP013583	Rhizobium phaseoli strain N261 plasmid pRphaN261c, complete sequence	429574	227228	268025	429574	plate,transposase	Lactococcus_phage(50.0%)	19	NA	NA
WP_008536038.1|227228_228455_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_008536039.1|228418_230305_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004680427.1|230304_230808_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_004680426.1|230894_231428_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004680425.1|231543_233031_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_016737476.1|233033_233588_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004680423.1|233623_234616_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_064820044.1|236314_238594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016737477.1|241150_242506_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_016737478.1|242567_243734_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_008536065.1|243733_245023_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_012489525.1|245032_248638_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_012489526.1|248934_250551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170960111.1|250721_250889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012489527.1|252230_253241_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008536079.1|256259_257147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818141.1|258507_259242_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	36.0	5.9e-32
WP_077994580.1|259241_260741_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	24.6	2.6e-10
WP_064820024.1|266603_268025_-|transposase	ISNCY-like element ISRel10 family transposase	transposase	NA	NA	NA	NA
