The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013601	Rhizobium sp. N731 chromosome, complete genome	4347393	1864584	1871847	4347393	tRNA	uncultured_Mediterranean_phage(100.0%)	9	NA	NA
WP_064802110.1|1864584_1865598_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	41.5	5.6e-25
WP_064806099.1|1865616_1866474_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	3.6e-33
WP_064802112.1|1866470_1867175_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.6	2.5e-40
WP_011425113.1|1867357_1867549_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	6.8e-09
WP_064802113.1|1867600_1868215_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_064802115.1|1868211_1869039_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	5.2e-53
WP_064802117.1|1869135_1870419_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.6	1.1e-97
WP_004678859.1|1870423_1871197_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	1.8e-23
WP_064802119.1|1871193_1871847_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.7	1.2e-15
>prophage 2
NZ_CP013601	Rhizobium sp. N731 chromosome, complete genome	4347393	2162152	2173150	4347393		uncultured_Mediterranean_phage(83.33%)	10	NA	NA
WP_064802578.1|2162152_2165074_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.2	0.0e+00
WP_123876199.1|2165106_2165358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064802580.1|2165356_2165869_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	57.1	3.8e-46
WP_064802581.1|2166089_2166656_+	DUF2569 family protein	NA	NA	NA	NA	NA
WP_064802583.1|2166789_2167437_-	MarC family protein	NA	NA	NA	NA	NA
WP_064802585.1|2167674_2170464_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	3.9e-76
WP_003539654.1|2170810_2170966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064802587.1|2171501_2171996_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.2	3.0e-24
WP_064802589.1|2172039_2172612_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.7	1.7e-42
WP_064802591.1|2172640_2173150_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	9.3e-45
>prophage 3
NZ_CP013601	Rhizobium sp. N731 chromosome, complete genome	4347393	3112214	3171145	4347393	protease,tRNA,transposase,holin	Bacillus_phage(25.0%)	57	NA	NA
WP_064804073.1|3112214_3112946_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_064804075.1|3112942_3113404_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_064804078.1|3113413_3113725_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
WP_064804079.1|3114050_3115154_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_064804081.1|3115170_3116244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064804083.1|3116436_3116928_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_064804085.1|3116924_3117392_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_020921912.1|3117410_3117953_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.8	2.3e-33
WP_064804087.1|3118067_3118952_-	cytochrome c1	NA	NA	NA	NA	NA
WP_064804088.1|3118977_3120258_-	cytochrome b N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_011426278.1|3120272_3120851_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_064804090.1|3121137_3122070_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_064804092.1|3122025_3123939_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.2	3.0e-27
WP_064804094.1|3124100_3124331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064804096.1|3124419_3126276_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.6	6.7e-32
WP_189636973.1|3126377_3126518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064804098.1|3126654_3127116_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_064804100.1|3127312_3128959_+	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_064804101.1|3128962_3129223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064804103.1|3129390_3130302_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_064804105.1|3130404_3130668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064806262.1|3130781_3130967_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_064804107.1|3131034_3132288_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	K4JS34	Caulobacter_phage	36.1	3.0e-44
WP_064804109.1|3132284_3132935_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_064804111.1|3132931_3133555_-	DUF1285 domain-containing protein	NA	NA	NA	NA	NA
WP_064804112.1|3133713_3134724_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_064804114.1|3134737_3135658_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_064804116.1|3135654_3138468_+	DUF4159 domain-containing protein	NA	NA	NA	NA	NA
WP_064804117.1|3138469_3140542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064804119.1|3140546_3140963_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_082240317.1|3140963_3141467_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_064804123.1|3141743_3142754_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_064804125.1|3142838_3143318_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_064804127.1|3143388_3144297_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_064804128.1|3144455_3145016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064804130.1|3145201_3145711_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_064804132.1|3145712_3146552_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_064804134.1|3146651_3148370_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_064804136.1|3148712_3149942_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_011426306.1|3150092_3150677_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	38.4	3.3e-30
WP_064804138.1|3150908_3151667_+	DUF2076 domain-containing protein	NA	NA	NA	NA	NA
WP_064804140.1|3151802_3152267_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	48.8	1.1e-28
WP_064804142.1|3152266_3153181_-	CDF family cation efflux transporter EmfA	NA	NA	NA	NA	NA
WP_064804144.1|3153377_3154058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064804145.1|3154070_3154310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064800413.1|3154722_3155673_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_064804147.1|3155925_3158115_-	anthranilate synthase	NA	NA	NA	NA	NA
WP_082929672.1|3158765_3159812_+	extensin family protein	NA	NA	NA	NA	NA
WP_064806264.1|3159944_3161624_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_064804153.1|3163722_3164448_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_064804155.1|3164494_3164953_+	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_064804157.1|3164964_3166095_-	DUF2333 family protein	NA	NA	NA	NA	NA
WP_064804159.1|3166233_3167307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011426320.1|3167380_3167983_-	thymidine kinase	NA	G9I9I2	Pseudomonas_phage	55.9	6.5e-53
WP_011426321.1|3168219_3169176_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_011426322.1|3169250_3170096_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_064804161.1|3170092_3171145_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	31.3	4.3e-20
>prophage 4
NZ_CP013601	Rhizobium sp. N731 chromosome, complete genome	4347393	3888771	3899079	4347393		Mycobacterium_phage(25.0%)	9	NA	NA
WP_064805160.1|3888771_3889482_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	47.3	3.3e-48
WP_064805162.1|3889481_3889838_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_064805166.1|3889834_3890563_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	37.8	2.4e-41
WP_064805167.1|3890671_3891895_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	30.7	2.9e-15
WP_064805169.1|3891998_3892973_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	75.1	1.9e-139
WP_064805171.1|3893152_3895321_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	52.0	2.2e-212
WP_064805173.1|3895299_3895713_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	42.9	2.8e-15
WP_064805175.1|3895726_3895948_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	50.7	6.7e-16
WP_064806360.1|3896844_3899079_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.9	8.1e-125
>prophage 1
NZ_CP013604	Rhizobium sp. N731 plasmid pRspN731c, complete sequence	433219	238755	277307	433219	transposase,plate	Stx2-converting_phage(100.0%)	21	NA	NA
WP_008536038.1|238755_239982_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_008536039.1|239945_241832_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004680427.1|241831_242335_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_004680426.1|242421_242955_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004680425.1|243070_244558_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_016737476.1|244560_245115_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004680423.1|245150_246143_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_064807228.1|247841_250121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016737477.1|252677_254033_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_016737478.1|254094_255261_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_008536065.1|255260_256550_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_012489525.1|256559_260165_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_012489526.1|260461_262078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170960111.1|262248_262416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009996985.1|262780_264346_-|transposase	IS66-like element ISRel19 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	44.4	2.5e-112
WP_009996986.1|264418_264766_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	53.9	4.6e-27
WP_009996987.1|264762_265125_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_012489527.1|266563_267574_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008536079.1|270592_271480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082929719.1|272550_275856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011053406.1|276140_277307_+|transposase	IS110-like element ISRel9 family transposase	transposase	NA	NA	NA	NA
