The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013527	Rhizobium phaseoli strain R723 chromosome, complete genome	4458723	1562286	1571268	4458723	transposase	Indivirus(16.67%)	8	NA	NA
WP_064817896.1|1562286_1563690_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.5	4.6e-33
WP_064817897.1|1563689_1564301_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.6	2.0e-17
WP_064817898.1|1564397_1565600_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_064817899.1|1565885_1566755_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.5	1.2e-95
WP_064817900.1|1566764_1567652_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_064817901.1|1567655_1568711_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.5	1.8e-95
WP_064817902.1|1568717_1569296_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	44.3	6.0e-32
WP_064817903.1|1569285_1571268_-	glycosyltransferase family 1 protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	36.4	8.8e-06
>prophage 2
NZ_CP013527	Rhizobium phaseoli strain R723 chromosome, complete genome	4458723	1977403	1990500	4458723	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_064819403.1|1977403_1978417_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.8e-24
WP_029531141.1|1978435_1979293_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	3.6e-33
WP_064818073.1|1979289_1979994_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	48.2	8.7e-41
WP_003558879.1|1980175_1980367_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	5.8e-08
WP_064818074.1|1980418_1981045_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_004678862.1|1981041_1981869_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	6.8e-53
WP_064818075.1|1981965_1983249_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	2.2e-98
WP_004678859.1|1983253_1984027_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	1.8e-23
WP_004678857.1|1984023_1984677_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.7	6.8e-16
WP_064818076.1|1984816_1986406_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	30.0	2.9e-12
WP_064818077.1|1986491_1987364_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_064818078.1|1987567_1987915_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.2	4.1e-12
WP_064818079.1|1987959_1990500_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	50.2	4.3e-58
>prophage 3
NZ_CP013527	Rhizobium phaseoli strain R723 chromosome, complete genome	4458723	2051162	2100527	4458723	capsid,transposase,protease,lysis	Rhizobium_phage(11.11%)	50	NA	NA
WP_064818120.1|2051162_2052137_+|capsid	phage major capsid protein	capsid	Q94MS1	Myxococcus_phage	52.0	1.8e-84
WP_064818121.1|2052161_2052947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818122.1|2053015_2053576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818123.1|2053591_2054290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818124.1|2054286_2056110_+	hypothetical protein	NA	H2EIB6	Brucella_phage	28.8	2.8e-51
WP_064818125.1|2056106_2056505_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_064818126.1|2057303_2059712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818127.1|2059711_2061733_+	hypothetical protein	NA	M4QPL5	Sulfitobacter_phage	34.0	1.5e-45
WP_064818128.1|2062004_2063360_+	hypothetical protein	NA	L7TMF7	Rhizobium_phage	57.2	1.4e-79
WP_064818129.1|2063359_2063716_+	hypothetical protein	NA	A0A0F6WBI7	Sinorhizobium_phage	46.8	4.1e-15
WP_064818130.1|2063712_2064141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818131.1|2064166_2064364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818132.1|2064353_2064818_+	lysozyme	NA	F4YCN5	Synechococcus_phage	42.7	3.1e-23
WP_064818133.1|2064817_2065180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064819407.1|2065184_2065412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818134.1|2065408_2067001_+	hypothetical protein	NA	L7TKC4	Rhizobium_phage	39.9	3.5e-82
WP_064818135.1|2067008_2067437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818136.1|2067603_2068512_+	hypothetical protein	NA	A0A1R3Y6Z6	Salmonella_virus	38.7	8.2e-52
WP_064818137.1|2068585_2068960_-	thermonuclease family protein	NA	G8DH70	Emiliania_huxleyi_virus	48.7	1.1e-23
WP_064818138.1|2069363_2069600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818139.1|2069793_2070150_+	response regulator	NA	NA	NA	NA	NA
WP_064818141.1|2070674_2071409_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	36.0	5.9e-32
WP_077994580.1|2071408_2072908_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_037138513.1|2073328_2075164_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA	NA
WP_064818143.1|2075919_2076375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818144.1|2076558_2076870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037138522.1|2077019_2077460_-	DUF3597 domain-containing protein	NA	NA	NA	NA	NA
WP_064819408.1|2077950_2078583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064818145.1|2078645_2079419_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	1.6e-32
WP_064818146.1|2079454_2080600_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_064818147.1|2080601_2081804_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_012483657.1|2081897_2082923_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.1	2.6e-78
WP_004675929.1|2083275_2084466_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_064818148.1|2084502_2085651_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_004675927.1|2085679_2085925_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_064818149.1|2086083_2086869_+	alpha/beta hydrolase	NA	A0A023W7H4	Mycobacterium_phage	30.3	3.5e-06
WP_004675925.1|2086997_2087831_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_010021897.1|2087970_2088174_+	DUF3126 family protein	NA	NA	NA	NA	NA
WP_004675924.1|2088447_2088819_+	phasin family protein	NA	NA	NA	NA	NA
WP_012483661.1|2089095_2089449_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.1	1.7e-13
WP_037138550.1|2089459_2091949_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.2	9.8e-172
WP_085994805.1|2092103_2093051_+|transposase	IS630 family transposase	transposase	A0A1V0SDF8	Indivirus	22.6	5.5e-14
WP_037138553.1|2093076_2093502_-	HIT family protein	NA	NA	NA	NA	NA
WP_064818150.1|2093615_2094806_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_016732944.1|2094883_2095603_-	glycerophosphodiester phosphodiesterase	NA	A0A1J0F961	Only_Syngen_Nebraska_virus	27.5	6.0e-13
WP_004678601.1|2095599_2096070_-	RidA family protein	NA	NA	NA	NA	NA
WP_064818151.1|2096206_2097043_+	cell envelope integrity EipB family protein	NA	NA	NA	NA	NA
WP_064818152.1|2097242_2098319_+	toxic anion resistance protein	NA	H6X3X9	Enterobacteria_phage	22.9	7.1e-10
WP_064819409.1|2098333_2099902_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_064818153.1|2099909_2100527_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
>prophage 4
NZ_CP013527	Rhizobium phaseoli strain R723 chromosome, complete genome	4458723	2248797	2259074	4458723		uncultured_Mediterranean_phage(83.33%)	9	NA	NA
WP_064818223.1|2248797_2251719_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.2	0.0e+00
WP_004671899.1|2252001_2252517_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	72.9	1.2e-44
WP_004671901.1|2252619_2253267_-	MarC family protein	NA	NA	NA	NA	NA
WP_064818224.1|2253504_2256327_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	6.1e-77
WP_003539654.1|2256753_2256909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818225.1|2257051_2257330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818226.1|2257410_2257905_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.8	4.7e-25
WP_004671914.1|2257963_2258536_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.2	7.5e-43
WP_004671916.1|2258564_2259074_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	1.2e-44
>prophage 5
NZ_CP013527	Rhizobium phaseoli strain R723 chromosome, complete genome	4458723	3227902	3289107	4458723	transposase,tRNA,holin,protease	Bacillus_phage(25.0%)	58	NA	NA
WP_064818722.1|3227902_3228634_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_004680128.1|3229097_3229409_-|protease	ATP-dependent Clp protease adapter ClpS	protease	NA	NA	NA	NA
WP_010031314.1|3229738_3230842_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_064818723.1|3230861_3231950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818724.1|3232148_3232637_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_064818725.1|3232633_3233101_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_004680123.1|3233124_3233667_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	42.9	7.1e-35
WP_004680117.1|3233930_3234815_-	cytochrome c1	NA	NA	NA	NA	NA
WP_004680115.1|3234840_3236121_-	cytochrome b N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012484665.1|3236135_3236714_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_064818726.1|3237000_3237933_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_064818727.1|3237888_3239802_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.2	3.0e-27
WP_012484668.1|3239963_3240194_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_064819458.1|3240286_3242143_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.7	3.2e-34
WP_064819459.1|3242527_3242989_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_064818728.1|3243184_3244831_+	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_004680100.1|3244834_3245092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818729.1|3245271_3246180_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_004680097.1|3246283_3246547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004680095.1|3246659_3246845_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_064818730.1|3246917_3248195_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A1B0V011	Roseobacter_phage	42.2	3.3e-46
WP_016733721.1|3248191_3248842_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_064818731.1|3248838_3249462_-	DUF1285 domain-containing protein	NA	NA	NA	NA	NA
WP_064818732.1|3249620_3250631_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_016733724.1|3250644_3251565_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_064818733.1|3251561_3254378_+	DUF4159 domain-containing protein	NA	NA	NA	NA	NA
WP_004671543.1|3254379_3256452_+	membrane protein	NA	NA	NA	NA	NA
WP_064818734.1|3256456_3256873_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_081279400.1|3256867_3257437_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_064817439.1|3258244_3259363_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_064818735.1|3259507_3260494_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010005628.1|3260500_3260980_-	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_037113980.1|3261050_3261959_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_004671557.1|3262116_3262677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004671559.1|3262862_3263372_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_037140570.1|3263373_3264216_+	anti-sigma factor	NA	NA	NA	NA	NA
WP_064818736.1|3264401_3266126_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_064818737.1|3266470_3267670_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_004671567.1|3267860_3268445_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	37.9	7.4e-30
WP_064818738.1|3268673_3269453_+	DUF2076 domain-containing protein	NA	NA	NA	NA	NA
WP_004671571.1|3269590_3270055_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	48.8	2.5e-28
WP_064818739.1|3270054_3270969_-	CDF family cation efflux transporter EmfA	NA	NA	NA	NA	NA
WP_064818740.1|3271151_3271829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037113986.1|3271843_3272083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818741.1|3272203_3274393_-	anthranilate synthase	NA	NA	NA	NA	NA
WP_064818742.1|3274660_3276919_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_064818743.1|3277170_3278154_+	extensin family protein	NA	NA	NA	NA	NA
WP_081279374.1|3278241_3278469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004671584.1|3278447_3280127_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_004671586.1|3280282_3280813_+	TIGR00645 family protein	NA	NA	NA	NA	NA
WP_064818744.1|3280809_3281778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818745.1|3282085_3282811_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_037140592.1|3282934_3284065_-	DUF2333 family protein	NA	NA	NA	NA	NA
WP_064818746.1|3284199_3285273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004678102.1|3285343_3285946_-	thymidine kinase	NA	A0A0K2FHC3	Enterobacter_phage	55.8	1.6e-51
WP_064818747.1|3286181_3287138_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_004678106.1|3287212_3288058_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_012484702.1|3288054_3289107_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	31.8	9.6e-20
>prophage 6
NZ_CP013527	Rhizobium phaseoli strain R723 chromosome, complete genome	4458723	3999669	4010063	4458723		Mycobacterium_phage(25.0%)	9	NA	NA
WP_016737530.1|3999669_4000380_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	48.7	2.7e-50
WP_004677374.1|4000379_4000736_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_064819071.1|4000732_4001461_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.6	2.4e-41
WP_064819072.1|4001556_4002801_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	30.4	1.4e-14
WP_064819073.1|4002903_4003878_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	75.1	5.6e-139
WP_064819074.1|4004073_4006278_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	51.5	1.2e-210
WP_064819075.1|4006256_4006661_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A249Y1D6	Staphylococcus_phage	34.8	4.7e-07
WP_010068756.1|4006677_4006899_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	1.8e-16
WP_064819077.1|4007804_4010063_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	36.8	1.4e-124
>prophage 1
NZ_CP013530	Rhizobium phaseoli strain R723 plasmid pRphaR723c, complete sequence	429574	227228	268025	429574	plate,transposase	Lactococcus_phage(50.0%)	19	NA	NA
WP_008536038.1|227228_228455_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_008536039.1|228418_230305_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004680427.1|230304_230808_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_004680426.1|230894_231428_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004680425.1|231543_233031_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_016737476.1|233033_233588_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004680423.1|233623_234616_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_064820044.1|236314_238594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016737477.1|241150_242506_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_016737478.1|242567_243734_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_008536065.1|243733_245023_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_012489525.1|245032_248638_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_012489526.1|248934_250551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170960111.1|250721_250889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012489527.1|252230_253241_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_008536079.1|256259_257147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064818141.1|258507_259242_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	36.0	5.9e-32
WP_077994580.1|259241_260741_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	24.6	2.6e-10
WP_064820024.1|266603_268025_-|transposase	ISNCY-like element ISRel10 family transposase	transposase	NA	NA	NA	NA
