The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP013595	Rhizobium sp. N741 chromosome, complete genome	4474074	1877413	1884676	4474074	tRNA	uncultured_Mediterranean_phage(100.0%)	9	NA	NA
WP_064810187.1|1877413_1878427_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.1e-24
WP_064810188.1|1878445_1879303_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.2	5.6e-34
WP_064810189.1|1879299_1880004_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.4	9.6e-40
WP_011425113.1|1880186_1880378_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	6.8e-09
WP_064810190.1|1880429_1881044_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_064802115.1|1881040_1881868_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	5.2e-53
WP_064810191.1|1881964_1883248_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.2	1.1e-97
WP_064810192.1|1883252_1884026_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	1.4e-23
WP_064810193.1|1884022_1884676_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.7	6.8e-16
>prophage 2
NZ_CP013595	Rhizobium sp. N741 chromosome, complete genome	4474074	2169412	2178722	4474074	tRNA,transposase	uncultured_Mediterranean_phage(83.33%)	8	NA	NA
WP_064802585.1|2169412_2172202_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	3.9e-76
WP_064809302.1|2172337_2173708_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	38.3	1.7e-80
WP_003539654.1|2174096_2174252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064810391.1|2174786_2175299_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.2	5.3e-24
WP_064810392.1|2175325_2175898_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	54.7	1.3e-42
WP_064802591.1|2175926_2176436_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	9.3e-45
WP_064810393.1|2176508_2177591_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_064810394.1|2177591_2178722_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	52.9	3.1e-101
>prophage 3
NZ_CP013595	Rhizobium sp. N741 chromosome, complete genome	4474074	2678976	2689056	4474074		Rhizobium_phage(16.67%)	11	NA	NA
WP_064815521.1|2678976_2680029_-	non-homologous end-joining DNA ligase	NA	A0A068CDF3	Rhizobium_phage	68.9	1.6e-139
WP_064815515.1|2680716_2681469_+	SOS response-associated peptidase family protein	NA	A0A291AUP1	Sinorhizobium_phage	40.2	4.2e-41
WP_082932202.1|2681473_2681698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_064815513.1|2681694_2682069_+	thermonuclease family protein	NA	G8DH70	Emiliania_huxleyi_virus	47.1	2.8e-22
WP_064815676.1|2682072_2682378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064815511.1|2682533_2682812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064815509.1|2682874_2684734_-	AAA family ATPase	NA	R4TQL5	Phaeocystis_globosa_virus	28.2	5.1e-24
WP_064815507.1|2684935_2685271_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_064810598.1|2685968_2686169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041678677.1|2686451_2687471_+	GlxA family transcriptional regulator	NA	A0A291LAM3	Bordetella_phage	41.6	1.7e-08
WP_064803258.1|2687724_2689056_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.9	4.5e-22
>prophage 4
NZ_CP013595	Rhizobium sp. N741 chromosome, complete genome	4474074	4038975	4049303	4474074		Mycobacterium_phage(28.57%)	9	NA	NA
WP_064811420.1|4038975_4039686_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	47.3	3.3e-48
WP_064805162.1|4039685_4040042_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_064811421.1|4040038_4040767_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	37.8	1.8e-41
WP_064811422.1|4040875_4042099_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	30.3	1.1e-14
WP_064811423.1|4042202_4043177_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	74.8	2.8e-138
WP_064811424.1|4043370_4045539_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	52.1	1.7e-212
WP_064811425.1|4045517_4045931_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_064811426.1|4045944_4046166_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	6.7e-16
WP_064811772.1|4047065_4049303_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.8	6.8e-124
>prophage 1
NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	433134	243078	279621	433134	plate,transposase	Porcine_endogenous_retrovirus(100.0%)	18	NA	NA
WP_064812000.1|243078_244305_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_008536039.1|244268_246155_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004680427.1|246154_246658_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_004680426.1|246744_247278_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004680425.1|247393_248881_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_016737476.1|248883_249438_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004680423.1|249473_250466_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_064812016.1|252164_254444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016737477.1|257000_258356_+|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_008536064.1|258417_259584_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_008536065.1|259583_260873_+	type VI secretion system protein TssL	NA	NA	NA	NA	NA
WP_012489525.1|260882_264488_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_012489526.1|264784_266401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170960111.1|266571_266739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012489527.1|268080_269091_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_064812001.1|272109_272997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011053406.1|276745_277912_+|transposase	IS110-like element ISRel9 family transposase	transposase	NA	NA	NA	NA
WP_064810414.1|278247_279621_-|transposase	ISNCY-like element ISRel26 family transposase	transposase	A1YTJ2	Porcine_endogenous_retrovirus	26.8	1.4e-05
