assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001676705.1_ASM167670v1	NZ_CP016170	Bordetella bronchialis strain AU3182, complete genome	1	840888-840956	1	CRISPRCasFinder	no	cas3	csa3,cas3,WYL,DinG,DEDDh	Unclear	GTATCGACGCCCGGCGTATCGACG	24	0	0	NA	NA	NA	1	1	Unclear	csa3,cas3,WYL,DinG,DEDDh	NA,NA	NA|231aa|up_9|NZ_CP016170.1_831629_832322_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|410aa|up_8|NZ_CP016170.1_832366_833596_+	pfam03069, FmdA_AmdA, Acetamidase/Formamidase family	NA|112aa|up_7|NZ_CP016170.1_833629_833965_+	smart00834, CxxC_CXXC_SSSS, Putative regulatory protein	NA|263aa|up_6|NZ_CP016170.1_834096_834885_+	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]	NA|437aa|up_5|NZ_CP016170.1_834918_836229_+	cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)	NA|323aa|up_4|NZ_CP016170.1_836287_837256_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|317aa|up_3|NZ_CP016170.1_837283_838234_+	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|299aa|up_2|NZ_CP016170.1_838244_839141_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|285aa|up_1|NZ_CP016170.1_839229_840084_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|248aa|up_0|NZ_CP016170.1_840112_840856_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|245aa|down_0|NZ_CP016170.1_841068_841803_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|324aa|down_1|NZ_CP016170.1_842048_843020_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|132aa|down_2|NZ_CP016170.1_843040_843436_+	cd00448, YjgF_YER057c_UK114_family, YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|291aa|down_3|NZ_CP016170.1_843432_844305_+	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM)	NA|293aa|down_4|NZ_CP016170.1_844301_845180_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|261aa|down_5|NZ_CP016170.1_845173_845956_+	TIGR02312, 2-keto-4-pentenoate_hydratase, 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA|367aa|down_6|NZ_CP016170.1_846205_847306_+	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|212aa|down_7|NZ_CP016170.1_847316_847952_+	COG4665, FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|556aa|down_8|NZ_CP016170.1_847953_849621_+	COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|190aa|down_9|NZ_CP016170.1_849747_850317_+	pfam01551, Peptidase_M23, Peptidase family M23
GCF_001676705.1_ASM167670v1	NZ_CP016170	Bordetella bronchialis strain AU3182, complete genome	2	1524364-1524455	2	CRISPRCasFinder	no	DinG	csa3,cas3,WYL,DinG,DEDDh	Type IV-A	CAGCAGAACAACCAGAATCGGCAGCAGAACCAGCA	35	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA,NA	NA|288aa|up_9|NZ_CP016170.1_1510850_1511714_-	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein	NA|433aa|up_8|NZ_CP016170.1_1511685_1512984_-	pfam13379, NMT1_2, NMT1-like family	NA|193aa|up_7|NZ_CP016170.1_1513486_1514065_+	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	NA|486aa|up_6|NZ_CP016170.1_1514083_1515541_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|179aa|up_5|NZ_CP016170.1_1516828_1517365_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|322aa|up_4|NZ_CP016170.1_1517490_1518456_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|61aa|up_3|NZ_CP016170.1_1518504_1518687_-	NF033216, lipo_YgdI_YgdR, YgdI/YgdR family lipoprotein	NA|652aa|up_2|NZ_CP016170.1_1519049_1521005_+	pfam08774, VRR_NUC, VRR-NUC domain	DinG|768aa|up_1|NZ_CP016170.1_1521001_1523305_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|265aa|up_0|NZ_CP016170.1_1523351_1524146_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|661aa|down_0|NZ_CP016170.1_1524603_1526586_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|399aa|down_1|NZ_CP016170.1_1526625_1527822_-	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB	NA|297aa|down_2|NZ_CP016170.1_1527796_1528687_-	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|185aa|down_3|NZ_CP016170.1_1528761_1529316_-	pfam05974, DUF892, Domain of unknown function (DUF892)	NA|264aa|down_4|NZ_CP016170.1_1529740_1530532_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|590aa|down_5|NZ_CP016170.1_1530533_1532303_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|291aa|down_6|NZ_CP016170.1_1533385_1534258_-	cd07742, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|66aa|down_7|NZ_CP016170.1_1534357_1534555_-	pfam12244, DUF3606, Protein of unknown function (DUF3606)	NA|762aa|down_8|NZ_CP016170.1_1534621_1536907_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|210aa|down_9|NZ_CP016170.1_1536971_1537601_-	cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily
GCF_001676705.1_ASM167670v1	NZ_CP016170	Bordetella bronchialis strain AU3182, complete genome	3	3127550-3127679	3	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	ACGAACTGGCTTCCGCAGCTCGCGAATGCTGCCGGC	36	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA,NA	NA|309aa|up_9|NZ_CP016170.1_3116906_3117833_-	pfam11453, DUF2950, Protein of unknown function (DUF2950)	NA|451aa|up_8|NZ_CP016170.1_3117844_3119197_-	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|331aa|up_7|NZ_CP016170.1_3119420_3120413_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|204aa|up_6|NZ_CP016170.1_3120446_3121058_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|417aa|up_5|NZ_CP016170.1_3121072_3122323_-	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family	NA|374aa|up_4|NZ_CP016170.1_3122623_3123745_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|326aa|up_3|NZ_CP016170.1_3123913_3124891_+	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase	NA|207aa|up_2|NZ_CP016170.1_3124917_3125538_+	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases	NA|160aa|up_1|NZ_CP016170.1_3125592_3126072_+	cd00466, DHQase_II, Dehydroquinase (DHQase), type II	NA|320aa|up_0|NZ_CP016170.1_3126083_3127043_+	cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family	NA|274aa|down_0|NZ_CP016170.1_3128292_3129114_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|285aa|down_1|NZ_CP016170.1_3129115_3129970_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|342aa|down_2|NZ_CP016170.1_3130068_3131094_-	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|138aa|down_3|NZ_CP016170.1_3131418_3131832_+	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]	NA|224aa|down_4|NZ_CP016170.1_3131853_3132525_+	pfam06267, DUF1028, Family of unknown function (DUF1028)	NA|326aa|down_5|NZ_CP016170.1_3132618_3133596_+	cd08412, PBP2_PAO1_like, The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily	NA|393aa|down_6|NZ_CP016170.1_3133639_3134818_+	PRK07522, PRK07522, acetylornithine deacetylase; Provisional	NA|115aa|down_7|NZ_CP016170.1_3134979_3135324_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|437aa|down_8|NZ_CP016170.1_3135331_3136642_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|298aa|down_9|NZ_CP016170.1_3136693_3137587_+	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold
GCF_001676705.1_ASM167670v1	NZ_CP016170	Bordetella bronchialis strain AU3182, complete genome	4	5249591-5249701	4	CRISPRCasFinder	no		csa3,cas3,WYL,DinG,DEDDh	Orphan	TCCCCCTTAAGGGGGCGACGCCTGCGGACCGGCGGAGCCG	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DinG,DEDDh	NA|109aa|up_7|NZ_CP016170.1_5240979_5241306_-,NA	NA|517aa|up_9|NZ_CP016170.1_5238397_5239948_+	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases	NA|299aa|up_8|NZ_CP016170.1_5240086_5240983_+	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|109aa|up_7|NZ_CP016170.1_5240979_5241306_-	NA	NA|260aa|up_6|NZ_CP016170.1_5241580_5242360_-	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|482aa|up_5|NZ_CP016170.1_5242661_5244107_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|398aa|up_4|NZ_CP016170.1_5244237_5245431_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|331aa|up_3|NZ_CP016170.1_5245603_5246596_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|209aa|up_2|NZ_CP016170.1_5246627_5247254_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|307aa|up_1|NZ_CP016170.1_5247410_5248331_-	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|350aa|up_0|NZ_CP016170.1_5248498_5249548_+	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase	NA|233aa|down_0|NZ_CP016170.1_5249815_5250514_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|419aa|down_1|NZ_CP016170.1_5250517_5251774_+	PRK07538, PRK07538, hypothetical protein; Provisional	NA|322aa|down_2|NZ_CP016170.1_5251832_5252798_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|213aa|down_3|NZ_CP016170.1_5252864_5253503_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|336aa|down_4|NZ_CP016170.1_5253638_5254646_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|257aa|down_5|NZ_CP016170.1_5254698_5255469_-	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR	NA|325aa|down_6|NZ_CP016170.1_5255498_5256473_-	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)	NA|302aa|down_7|NZ_CP016170.1_5256562_5257468_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|209aa|down_8|NZ_CP016170.1_5257843_5258470_+	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only]	NA|404aa|down_9|NZ_CP016170.1_5259185_5260397_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system
