assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001676725.1_ASM167672v1	NZ_CP016172	Bordetella flabilis strain AU10664, complete genome	1	60035-60129	1	CRISPRCasFinder	no		csa3,WYL,DinG,DEDDh,cas3	Orphan	CGGCCGCTTTGGCCGCCGTCTTC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,DEDDh,cas3	NA,NA	NA|301aa|up_9|NZ_CP016172.1_50513_51416_+	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|98aa|up_8|NZ_CP016172.1_51495_51789_+	COG3809, COG3809, Uncharacterized protein conserved in bacteria [Function unknown]	NA|311aa|up_7|NZ_CP016172.1_51946_52879_+	PRK12921, PRK12921, oxidoreductase	NA|151aa|up_6|NZ_CP016172.1_52983_53436_+	COG4922, COG4922, Uncharacterized protein conserved in bacteria [Function unknown]	NA|177aa|up_5|NZ_CP016172.1_53500_54031_+	COG3613, COG3613, Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]	NA|239aa|up_4|NZ_CP016172.1_54072_54789_-	PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional	NA|162aa|up_3|NZ_CP016172.1_55180_55666_-	cd10518, SET_SETD1-like, SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins	NA|158aa|up_2|NZ_CP016172.1_55754_56228_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|608aa|up_1|NZ_CP016172.1_56322_58146_+	PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated	NA|478aa|up_0|NZ_CP016172.1_58172_59606_-	cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like	NA|873aa|down_0|NZ_CP016172.1_62643_65262_+	pfam14345, GDYXXLXY, GDYXXLXY protein	NA|295aa|down_1|NZ_CP016172.1_65249_66134_-	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|154aa|down_2|NZ_CP016172.1_66207_66669_-	pfam04361, DUF494, Protein of unknown function (DUF494)	NA|382aa|down_3|NZ_CP016172.1_66932_68078_+	cd06819, PLPDE_III_LS_D-TA, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase	NA|243aa|down_4|NZ_CP016172.1_68186_68915_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|219aa|down_5|NZ_CP016172.1_68895_69552_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|223aa|down_6|NZ_CP016172.1_69548_70217_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|261aa|down_7|NZ_CP016172.1_70223_71006_-	cd01072, PBP2_SMa0082_like, The substrate-binding domain of putatuve amino acid transporter; the type 2 periplasmic binding protein fold	NA|340aa|down_8|NZ_CP016172.1_71330_72350_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|230aa|down_9|NZ_CP016172.1_72598_73288_-	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_001676725.1_ASM167672v1	NZ_CP016172	Bordetella flabilis strain AU10664, complete genome	2	4302162-4302274	2	CRISPRCasFinder	no		csa3,WYL,DinG,DEDDh,cas3	Orphan	CCTTTCGCCCCTTTGGTTCCTTT	23	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,DinG,DEDDh,cas3	NA|113aa|up_9|NZ_CP016172.1_4294697_4295036_+,NA|77aa|up_7|NZ_CP016172.1_4295673_4295904_-,NA|60aa|up_6|NZ_CP016172.1_4296021_4296201_+,NA|122aa|up_3|NZ_CP016172.1_4298571_4298937_+,NA|135aa|up_1|NZ_CP016172.1_4299789_4300194_+,NA	NA|113aa|up_9|NZ_CP016172.1_4294697_4295036_+	NA	NA|203aa|up_8|NZ_CP016172.1_4295038_4295647_+	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb	NA|77aa|up_7|NZ_CP016172.1_4295673_4295904_-	NA	NA|60aa|up_6|NZ_CP016172.1_4296021_4296201_+	NA	NA|158aa|up_5|NZ_CP016172.1_4296197_4296671_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|636aa|up_4|NZ_CP016172.1_4296667_4298575_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|122aa|up_3|NZ_CP016172.1_4298571_4298937_+	NA	NA|168aa|up_2|NZ_CP016172.1_4299296_4299800_+	pfam07799, DUF1643, Protein of unknown function (DUF1643)	NA|135aa|up_1|NZ_CP016172.1_4299789_4300194_+	NA	NA|393aa|up_0|NZ_CP016172.1_4300601_4301780_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|346aa|down_0|NZ_CP016172.1_4303434_4304472_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|551aa|down_1|NZ_CP016172.1_4304525_4306178_+	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|261aa|down_2|NZ_CP016172.1_4306203_4306986_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|579aa|down_3|NZ_CP016172.1_4307082_4308819_-	PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|205aa|down_4|NZ_CP016172.1_4308815_4309430_-	COG1838, FumA, Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]	NA|292aa|down_5|NZ_CP016172.1_4309432_4310308_-	pfam05681, Fumerase, Fumarate hydratase (Fumerase)	NA|313aa|down_6|NZ_CP016172.1_4310394_4311333_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|118aa|down_7|NZ_CP016172.1_4311502_4311856_-	cd03501, SQR_TypeA_SdhC_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol	NA|116aa|down_8|NZ_CP016172.1_4311855_4312203_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|238aa|down_9|NZ_CP016172.1_4312202_4312916_-	COG0479, FrdB, Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
