assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001676785.2_ASM167678v2	NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	1	181513-181614	1	CRISPRCasFinder	no		csa3,WYL,DinG,cas4,RT	Orphan	AAAAGGCCTTAAATGCCGGACGTGATGC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas4,RT	NA,NA|168aa|down_0|NZ_CP015910.2_181844_182348_-,NA|214aa|down_2|NZ_CP015910.2_183527_184169_+,NA|388aa|down_7|NZ_CP015910.2_188296_189460_-	NA|615aa|up_9|NZ_CP015910.2_164900_166745_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|615aa|up_8|NZ_CP015910.2_166788_168633_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|346aa|up_7|NZ_CP015910.2_169025_170063_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|755aa|up_6|NZ_CP015910.2_170077_172342_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|409aa|up_5|NZ_CP015910.2_172832_174059_+	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|468aa|up_4|NZ_CP015910.2_174400_175804_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|801aa|up_3|NZ_CP015910.2_176323_178726_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|78aa|up_2|NZ_CP015910.2_178971_179205_+	PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed	NA|353aa|up_1|NZ_CP015910.2_179204_180263_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|245aa|up_0|NZ_CP015910.2_180259_180994_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|168aa|down_0|NZ_CP015910.2_181844_182348_-	NA	NA|295aa|down_1|NZ_CP015910.2_182501_183386_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|214aa|down_2|NZ_CP015910.2_183527_184169_+	NA	NA|207aa|down_3|NZ_CP015910.2_184226_184847_-	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|334aa|down_4|NZ_CP015910.2_184858_185860_-	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|195aa|down_5|NZ_CP015910.2_185934_186519_-	COG1329, COG1329, Transcriptional regulators, similar to M	NA|466aa|down_6|NZ_CP015910.2_186772_188170_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|388aa|down_7|NZ_CP015910.2_188296_189460_-	NA	NA|242aa|down_8|NZ_CP015910.2_190249_190975_-	pfam14025, DUF4241, Protein of unknown function (DUF4241)	NA|594aa|down_9|NZ_CP015910.2_191065_192847_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_001676785.2_ASM167678v2	NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	2	235008-235110	2	CRISPRCasFinder	no		csa3,WYL,DinG,cas4,RT	Orphan	GAAGTATATGAATCAGTAAAATATT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas4,RT	NA|103aa|up_8|NZ_CP015910.2_225136_225445_+,NA|173aa|up_6|NZ_CP015910.2_227751_228270_+,NA|192aa|up_5|NZ_CP015910.2_228432_229008_-,NA|158aa|up_2|NZ_CP015910.2_232297_232771_-,NA|125aa|up_1|NZ_CP015910.2_232922_233297_+,NA|275aa|up_0|NZ_CP015910.2_233368_234193_-,NA|142aa|down_5|NZ_CP015910.2_241343_241769_+,NA|365aa|down_8|NZ_CP015910.2_244498_245593_+	NA|225aa|up_9|NZ_CP015910.2_224356_225031_+	pfam13411, MerR_1, MerR HTH family regulatory protein	NA|103aa|up_8|NZ_CP015910.2_225136_225445_+	NA	NA|664aa|up_7|NZ_CP015910.2_225676_227668_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|173aa|up_6|NZ_CP015910.2_227751_228270_+	NA	NA|192aa|up_5|NZ_CP015910.2_228432_229008_-	NA	NA|96aa|up_4|NZ_CP015910.2_229022_229310_-	pfam06291, Lambda_Bor, Bor protein	NA|804aa|up_3|NZ_CP015910.2_229586_231998_+	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|158aa|up_2|NZ_CP015910.2_232297_232771_-	NA	NA|125aa|up_1|NZ_CP015910.2_232922_233297_+	NA	NA|275aa|up_0|NZ_CP015910.2_233368_234193_-	NA	NA|394aa|down_0|NZ_CP015910.2_237344_238526_-	cd00249, AGE, AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid	NA|291aa|down_1|NZ_CP015910.2_238708_239581_+	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|236aa|down_2|NZ_CP015910.2_239723_240431_+	pfam12787, EcsC, EcsC protein family	NA|129aa|down_3|NZ_CP015910.2_240449_240836_+	pfam06803, DUF1232, Protein of unknown function (DUF1232)	NA|136aa|down_4|NZ_CP015910.2_240859_241267_+	PHA00684, PHA00684, hypothetical protein	NA|142aa|down_5|NZ_CP015910.2_241343_241769_+	NA	NA|265aa|down_6|NZ_CP015910.2_241946_242741_-	PRK09618, flgD, flagellar hook assembly protein FlgD	NA|536aa|down_7|NZ_CP015910.2_242791_244399_-	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|365aa|down_8|NZ_CP015910.2_244498_245593_+	NA	NA|90aa|down_9|NZ_CP015910.2_245596_245866_+	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
GCF_001676785.2_ASM167678v2	NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	3	319999-320241	1	CRT	no		csa3,WYL,DinG,cas4,RT	Orphan	GCTCTTCTTTCTTTTCAGCTTTTTCAG	27	4	4	320026-320055|320083-320100|320128-320157|320185-320214	NZ_CP015910.2_320242-320271|NZ_CP015910.2_320254-320271|NZ_CP015910.2_320242-320271|NZ_CP015910.2_320242-320271	NA	4	4	Orphan	csa3,WYL,DinG,cas4,RT	NA|758aa|up_5|NZ_CP015910.2_312161_314435_+,NA|208aa|up_3|NZ_CP015910.2_315212_315836_+,NA|247aa|down_0|NZ_CP015910.2_320354_321095_-,NA|225aa|down_3|NZ_CP015910.2_327118_327793_+	NA|149aa|up_9|NZ_CP015910.2_307562_308009_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|319aa|up_8|NZ_CP015910.2_308399_309356_+	cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases	NA|328aa|up_7|NZ_CP015910.2_309727_310711_-	PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional	NA|311aa|up_6|NZ_CP015910.2_311203_312136_+	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|758aa|up_5|NZ_CP015910.2_312161_314435_+	NA	NA|123aa|up_4|NZ_CP015910.2_314681_315050_-	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|208aa|up_3|NZ_CP015910.2_315212_315836_+	NA	NA|484aa|up_2|NZ_CP015910.2_315911_317363_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|126aa|up_1|NZ_CP015910.2_317449_317827_-	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|607aa|up_0|NZ_CP015910.2_317839_319660_-	pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G	NA|247aa|down_0|NZ_CP015910.2_320354_321095_-	NA	NA|244aa|down_1|NZ_CP015910.2_323506_324238_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|901aa|down_2|NZ_CP015910.2_324250_326953_-	TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain	NA|225aa|down_3|NZ_CP015910.2_327118_327793_+	NA	NA|188aa|down_4|NZ_CP015910.2_327817_328381_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|144aa|down_5|NZ_CP015910.2_328487_328919_-	pfam11396, PepSY_like, Putative beta-lactamase-inhibitor-like, PepSY-like	NA|333aa|down_6|NZ_CP015910.2_329203_330202_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|327aa|down_7|NZ_CP015910.2_330294_331275_+	pfam05448, AXE1, Acetyl xylan esterase (AXE1)	NA|488aa|down_8|NZ_CP015910.2_331406_332870_+	pfam04326, AlbA_2, Putative DNA-binding domain	NA|311aa|down_9|NZ_CP015910.2_332962_333895_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_001676785.2_ASM167678v2	NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	4	430401-430497	3	CRISPRCasFinder	no		csa3,WYL,DinG,cas4,RT	Orphan	CAATTTTTATTAGCAACAATATAAAA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas4,RT	NA,NA|147aa|down_3|NZ_CP015910.2_433688_434129_-	NA|243aa|up_9|NZ_CP015910.2_421876_422605_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|112aa|up_8|NZ_CP015910.2_422900_423236_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|304aa|up_7|NZ_CP015910.2_423397_424309_+	pfam00119, ATP-synt_A, ATP synthase A chain	NA|74aa|up_6|NZ_CP015910.2_424345_424567_+	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c	NA|168aa|up_5|NZ_CP015910.2_424602_425106_+	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b	NA|183aa|up_4|NZ_CP015910.2_425142_425691_+	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|214aa|up_3|NZ_CP015910.2_425716_426358_+	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|500aa|up_2|NZ_CP015910.2_426384_427884_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|293aa|up_1|NZ_CP015910.2_427946_428825_+	pfam00231, ATP-synt, ATP synthase	NA|251aa|up_0|NZ_CP015910.2_429455_430208_+	sd00045, ANK, ankyrin repeats	NA|255aa|down_0|NZ_CP015910.2_430555_431320_+	sd00045, ANK, ankyrin repeats	NA|254aa|down_1|NZ_CP015910.2_431547_432309_+	sd00045, ANK, ankyrin repeats	NA|237aa|down_2|NZ_CP015910.2_432542_433253_+	sd00045, ANK, ankyrin repeats	NA|147aa|down_3|NZ_CP015910.2_433688_434129_-	NA	NA|184aa|down_4|NZ_CP015910.2_434134_434686_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|303aa|down_5|NZ_CP015910.2_434838_435747_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|393aa|down_6|NZ_CP015910.2_435953_437132_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|720aa|down_7|NZ_CP015910.2_437415_439575_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|600aa|down_8|NZ_CP015910.2_439734_441534_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|180aa|down_9|NZ_CP015910.2_441588_442128_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain
GCF_001676785.2_ASM167678v2	NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	5	852628-852727	4	CRISPRCasFinder	no		csa3,WYL,DinG,cas4,RT	Orphan	TTAATAAAAATATATCATTATAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas4,RT	NA|201aa|up_5|NZ_CP015910.2_845503_846106_-,NA|68aa|down_7|NZ_CP015910.2_862026_862230_-	NA|128aa|up_9|NZ_CP015910.2_840369_840753_+	pfam10135, Rod-binding, Rod binding protein	NA|148aa|up_8|NZ_CP015910.2_840789_841233_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|447aa|up_7|NZ_CP015910.2_841339_842680_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|921aa|up_6|NZ_CP015910.2_842735_845498_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|201aa|up_5|NZ_CP015910.2_845503_846106_-	NA	NA|446aa|up_4|NZ_CP015910.2_846102_847440_-	pfam13175, AAA_15, AAA ATPase domain	NA|316aa|up_3|NZ_CP015910.2_847494_848442_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|717aa|up_2|NZ_CP015910.2_848387_850538_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|425aa|up_1|NZ_CP015910.2_850580_851855_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|238aa|up_0|NZ_CP015910.2_851851_852565_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP015910.2_856235_857354_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|330aa|down_1|NZ_CP015910.2_857383_858373_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|217aa|down_2|NZ_CP015910.2_858438_859089_+	pfam00302, CAT, Chloramphenicol acetyltransferase	NA|414aa|down_3|NZ_CP015910.2_859216_860458_+	NF033164, lipo_LipL46, lipoprotein LipL46	NA|182aa|down_4|NZ_CP015910.2_860468_861014_+	pfam02677, DUF208, Uncharacterized BCR, COG1636	NA|120aa|down_5|NZ_CP015910.2_861023_861383_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|63aa|down_6|NZ_CP015910.2_861589_861778_-	pfam14070, YjfB_motility, Putative motility protein	NA|68aa|down_7|NZ_CP015910.2_862026_862230_-	NA	NA|563aa|down_8|NZ_CP015910.2_862484_864173_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|202aa|down_9|NZ_CP015910.2_864365_864971_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
GCF_001676785.2_ASM167678v2	NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	6	1826123-1826746	5	CRISPRCasFinder	no		csa3,WYL,DinG,cas4,RT	Orphan	CCAATTATTTAAAGGCTGATTAAA	24	0	0	NA	NA	NA	8	8	Orphan	csa3,WYL,DinG,cas4,RT	NA|184aa|up_8|NZ_CP015910.2_1811358_1811910_+,NA|343aa|up_3|NZ_CP015910.2_1817978_1819007_-,NA|62aa|down_2|NZ_CP015910.2_1833189_1833375_+,NA|70aa|down_3|NZ_CP015910.2_1833485_1833695_-,NA|183aa|down_4|NZ_CP015910.2_1834414_1834963_-,NA|88aa|down_5|NZ_CP015910.2_1834974_1835238_-,NA|276aa|down_6|NZ_CP015910.2_1835238_1836066_-,NA|113aa|down_8|NZ_CP015910.2_1836757_1837096_-	NA|391aa|up_9|NZ_CP015910.2_1810159_1811332_+	sd00006, TPR, Tetratricopeptide repeat	NA|184aa|up_8|NZ_CP015910.2_1811358_1811910_+	NA	NA|301aa|up_7|NZ_CP015910.2_1811912_1812815_-	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|635aa|up_6|NZ_CP015910.2_1812832_1814737_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|542aa|up_5|NZ_CP015910.2_1815137_1816763_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|332aa|up_4|NZ_CP015910.2_1816859_1817855_-	cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains	NA|343aa|up_3|NZ_CP015910.2_1817978_1819007_-	NA	NA|231aa|up_2|NZ_CP015910.2_1819194_1819887_+	sd00006, TPR, Tetratricopeptide repeat	NA|565aa|up_1|NZ_CP015910.2_1819924_1821619_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|864aa|up_0|NZ_CP015910.2_1821689_1824281_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|798aa|down_0|NZ_CP015910.2_1827374_1829768_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|372aa|down_1|NZ_CP015910.2_1831658_1832774_-	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|62aa|down_2|NZ_CP015910.2_1833189_1833375_+	NA	NA|70aa|down_3|NZ_CP015910.2_1833485_1833695_-	NA	NA|183aa|down_4|NZ_CP015910.2_1834414_1834963_-	NA	NA|88aa|down_5|NZ_CP015910.2_1834974_1835238_-	NA	NA|276aa|down_6|NZ_CP015910.2_1835238_1836066_-	NA	NA|201aa|down_7|NZ_CP015910.2_1836058_1836661_-	COG3179, COG3179, Predicted chitinase [General function prediction only]	NA|113aa|down_8|NZ_CP015910.2_1836757_1837096_-	NA	NA|130aa|down_9|NZ_CP015910.2_1837169_1837559_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family
GCF_001676785.2_ASM167678v2	NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	7	2389739-2390071	6	CRISPRCasFinder	no		csa3,WYL,DinG,cas4,RT	Orphan	AAAGCTGAGGCAGATGCAAAAGCT	24	0	0	NA	NA	NA	5	5	Orphan	csa3,WYL,DinG,cas4,RT	NA|72aa|up_9|NZ_CP015910.2_2378972_2379188_+,NA|178aa|up_6|NZ_CP015910.2_2381716_2382250_-,NA|207aa|up_0|NZ_CP015910.2_2388489_2389110_+,NA|110aa|down_2|NZ_CP015910.2_2394660_2394990_-	NA|72aa|up_9|NZ_CP015910.2_2378972_2379188_+	NA	NA|104aa|up_8|NZ_CP015910.2_2379431_2379743_+	COG3937, COG3937, Uncharacterized conserved protein [Function unknown]	NA|560aa|up_7|NZ_CP015910.2_2379849_2381529_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|178aa|up_6|NZ_CP015910.2_2381716_2382250_-	NA	NA|267aa|up_5|NZ_CP015910.2_2382409_2383210_+	pfam16258, DUF4912, Domain of unknown function (DUF4912)	NA|582aa|up_4|NZ_CP015910.2_2383283_2385029_-	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA|64aa|up_3|NZ_CP015910.2_2385060_2385252_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|305aa|up_2|NZ_CP015910.2_2385649_2386564_+	cd00954, NAL, N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL)	NA|467aa|up_1|NZ_CP015910.2_2386808_2388209_+	PRK12831, PRK12831, putative oxidoreductase; Provisional	NA|207aa|up_0|NZ_CP015910.2_2388489_2389110_+	NA	NA|188aa|down_0|NZ_CP015910.2_2391363_2391927_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|829aa|down_1|NZ_CP015910.2_2392020_2394507_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|110aa|down_2|NZ_CP015910.2_2394660_2394990_-	NA	NA|191aa|down_3|NZ_CP015910.2_2394986_2395559_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|615aa|down_4|NZ_CP015910.2_2395639_2397484_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|441aa|down_5|NZ_CP015910.2_2397500_2398823_-	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO	NA|456aa|down_6|NZ_CP015910.2_2398888_2400256_-	pfam13413, HTH_25, Helix-turn-helix domain	NA|241aa|down_7|NZ_CP015910.2_2400270_2400993_-	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]	NA|79aa|down_8|NZ_CP015910.2_2401305_2401542_+	pfam11950, DUF3467, Protein of unknown function (DUF3467)	NA|124aa|down_9|NZ_CP015910.2_2401567_2401939_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation
GCF_001676785.2_ASM167678v2	NZ_CP015910	Brachyspira hyodysenteriae ATCC 27164 strain B-78 chromosome, complete genome	8	2823325-2823442	7	CRISPRCasFinder	no		csa3,WYL,DinG,cas4,RT	Orphan	AATAAAGATCCTCTAAATCCTTATTATTC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,cas4,RT	NA|107aa|up_7|NZ_CP015910.2_2812647_2812968_+,NA|142aa|down_6|NZ_CP015910.2_2832205_2832631_+,NA|180aa|down_7|NZ_CP015910.2_2832718_2833258_-	NA|262aa|up_9|NZ_CP015910.2_2811418_2812204_+	cd09085, Mth212-like_AP-endo, Methanothermobacter thermautotrophicus Mth212-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|111aa|up_8|NZ_CP015910.2_2812300_2812633_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|107aa|up_7|NZ_CP015910.2_2812647_2812968_+	NA	NA|713aa|up_6|NZ_CP015910.2_2812976_2815115_+	sd00006, TPR, Tetratricopeptide repeat	NA|70aa|up_5|NZ_CP015910.2_2815172_2815382_+	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain	NA|290aa|up_4|NZ_CP015910.2_2816711_2817581_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|373aa|up_3|NZ_CP015910.2_2817611_2818730_+	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|387aa|up_2|NZ_CP015910.2_2819060_2820221_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|393aa|up_1|NZ_CP015910.2_2820591_2821770_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|362aa|up_0|NZ_CP015910.2_2821974_2823060_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|389aa|down_0|NZ_CP015910.2_2823592_2824759_+	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein	NA|720aa|down_1|NZ_CP015910.2_2824936_2827096_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|393aa|down_2|NZ_CP015910.2_2827260_2828439_+	TIGR00990, Mitochondrial_import_receptor_subunit_TOM70, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)	NA|169aa|down_3|NZ_CP015910.2_2828832_2829339_-	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|269aa|down_4|NZ_CP015910.2_2829451_2830258_-	cd08770, DAP_dppA_3, Peptidase M55, D-aminopeptidase dipeptide-binding protein family	NA|402aa|down_5|NZ_CP015910.2_2830671_2831877_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|142aa|down_6|NZ_CP015910.2_2832205_2832631_+	NA	NA|180aa|down_7|NZ_CP015910.2_2832718_2833258_-	NA	NA|329aa|down_8|NZ_CP015910.2_2833413_2834400_+	cd19089, AKR_AKR14A1_2, AKR14A family of aldo-keto reductase (AKR)	NA|460aa|down_9|NZ_CP015910.2_2835006_2836386_+	PRK11715, PRK11715, cell envelope integrity protein CreD
