assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001677475.1_ASM167747v1	NZ_CP015229	Escherichia coli strain 06-00048 chromosome, complete genome	1	427532-427627	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Orphan	CACAGCACGAATTGCTAAAGCGG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,RT	NA|102aa|up_4|NZ_CP015229.1_423921_424227_-,NA|184aa|up_3|NZ_CP015229.1_424527_425079_+,NA|81aa|up_2|NZ_CP015229.1_425801_426044_-,NA|61aa|up_0|NZ_CP015229.1_427163_427346_-,NA|157aa|down_0|NZ_CP015229.1_428629_429100_+,NA|51aa|down_1|NZ_CP015229.1_429222_429375_+,NA|75aa|down_3|NZ_CP015229.1_430545_430770_-,NA|201aa|down_4|NZ_CP015229.1_430805_431408_-,NA|165aa|down_6|NZ_CP015229.1_433476_433971_+,NA|97aa|down_9|NZ_CP015229.1_437730_438021_+	NA|529aa|up_9|NZ_CP015229.1_415708_417295_-	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|297aa|up_8|NZ_CP015229.1_417533_418424_+	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|390aa|up_7|NZ_CP015229.1_418468_419638_+	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|484aa|up_6|NZ_CP015229.1_419671_421123_+	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|629aa|up_5|NZ_CP015229.1_421162_423049_+	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|102aa|up_4|NZ_CP015229.1_423921_424227_-	NA	NA|184aa|up_3|NZ_CP015229.1_424527_425079_+	NA	NA|81aa|up_2|NZ_CP015229.1_425801_426044_-	NA	NA|329aa|up_1|NZ_CP015229.1_426059_427046_-	pfam14362, DUF4407, Domain of unknown function (DUF4407)	NA|61aa|up_0|NZ_CP015229.1_427163_427346_-	NA	NA|157aa|down_0|NZ_CP015229.1_428629_429100_+	NA	NA|51aa|down_1|NZ_CP015229.1_429222_429375_+	NA	NA|281aa|down_2|NZ_CP015229.1_429462_430305_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|75aa|down_3|NZ_CP015229.1_430545_430770_-	NA	NA|201aa|down_4|NZ_CP015229.1_430805_431408_-	NA	NA|636aa|down_5|NZ_CP015229.1_431496_433404_+	pfam05876, Terminase_GpA, Phage terminase large subunit (GpA)	NA|165aa|down_6|NZ_CP015229.1_433476_433971_+	NA	NA|504aa|down_7|NZ_CP015229.1_433981_435493_+	pfam05136, Phage_portal_2, Phage portal protein, lambda family	NA|667aa|down_8|NZ_CP015229.1_435538_437539_+	pfam05065, Phage_capsid, Phage capsid family	NA|97aa|down_9|NZ_CP015229.1_437730_438021_+	NA
GCF_001677475.1_ASM167747v1	NZ_CP015229	Escherichia coli strain 06-00048 chromosome, complete genome	2	2160480-2160610	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Orphan	CCGGGTTAACCCAATCGGCTTCAGGCTGCTGCGGTTGGTGT	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,RT	NA|108aa|up_9|NZ_CP015229.1_2155253_2155577_-,NA|119aa|up_8|NZ_CP015229.1_2155672_2156029_-,NA|101aa|up_7|NZ_CP015229.1_2156030_2156333_-,NA|104aa|up_6|NZ_CP015229.1_2156333_2156645_-,NA|85aa|up_5|NZ_CP015229.1_2156637_2156892_-,NA|91aa|down_3|NZ_CP015229.1_2162599_2162872_+,NA|238aa|down_4|NZ_CP015229.1_2162875_2163589_+,NA|119aa|down_5|NZ_CP015229.1_2163620_2163977_+,NA|129aa|down_7|NZ_CP015229.1_2164615_2165002_+	NA|108aa|up_9|NZ_CP015229.1_2155253_2155577_-	NA	NA|119aa|up_8|NZ_CP015229.1_2155672_2156029_-	NA	NA|101aa|up_7|NZ_CP015229.1_2156030_2156333_-	NA	NA|104aa|up_6|NZ_CP015229.1_2156333_2156645_-	NA	NA|85aa|up_5|NZ_CP015229.1_2156637_2156892_-	NA	NA|163aa|up_4|NZ_CP015229.1_2156884_2157373_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|139aa|up_3|NZ_CP015229.1_2157369_2157786_-	pfam06163, DUF977, Bacterial protein of unknown function (DUF977)	NA|257aa|up_2|NZ_CP015229.1_2157801_2158572_-	pfam07789, DUF1627, Protein of unknown function (DUF1627)	NA|247aa|up_1|NZ_CP015229.1_2158597_2159338_-	PRK12377, PRK12377, putative replication protein; Provisional	NA|361aa|up_0|NZ_CP015229.1_2159344_2160427_-	PRK02854, PRK02854, primosomal protein DnaT	NA|99aa|down_0|NZ_CP015229.1_2160680_2160977_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|76aa|down_1|NZ_CP015229.1_2161120_2161348_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|257aa|down_2|NZ_CP015229.1_2161432_2162203_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|91aa|down_3|NZ_CP015229.1_2162599_2162872_+	NA	NA|238aa|down_4|NZ_CP015229.1_2162875_2163589_+	NA	NA|119aa|down_5|NZ_CP015229.1_2163620_2163977_+	NA	NA|74aa|down_6|NZ_CP015229.1_2164308_2164530_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|129aa|down_7|NZ_CP015229.1_2164615_2165002_+	NA	NA|690aa|down_8|NZ_CP015229.1_2165109_2167179_+	PRK09709, PRK09709, exodeoxyribonuclease VIII	NA|99aa|down_9|NZ_CP015229.1_2167175_2167472_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam
GCF_001677475.1_ASM167747v1	NZ_CP015229	Escherichia coli strain 06-00048 chromosome, complete genome	3	2723902-2724035	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,RT	NA|237aa|up_9|NZ_CP015229.1_2713062_2713773_-,NA	NA|237aa|up_9|NZ_CP015229.1_2713062_2713773_-	NA	NA|415aa|up_8|NZ_CP015229.1_2713769_2715014_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|181aa|up_7|NZ_CP015229.1_2715031_2715574_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|293aa|up_6|NZ_CP015229.1_2715578_2716457_-	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional	NA|300aa|up_5|NZ_CP015229.1_2716514_2717414_-	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|362aa|up_4|NZ_CP015229.1_2717413_2718499_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_3|NZ_CP015229.1_2718870_2719764_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_2|NZ_CP015229.1_2719938_2721333_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP015229.1_2721343_2722564_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP015229.1_2722560_2723841_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP015229.1_2724116_2725595_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP015229.1_2725596_2726991_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP015229.1_2727126_2728497_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP015229.1_2728689_2730126_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP015229.1_2730128_2731352_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP015229.1_2731348_2731828_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP015229.1_2731830_2732796_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP015229.1_2732798_2733920_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP015229.1_2733946_2734495_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP015229.1_2734510_2735257_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_001677475.1_ASM167747v1	NZ_CP015229	Escherichia coli strain 06-00048 chromosome, complete genome	4	3512817-3513516	1,1,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,10,10	11	TypeI-E	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,RT	NA,NA	NA|254aa|up_9|NZ_CP015229.1_3504690_3505452_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP015229.1_3505432_3506482_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP015229.1_3506478_3506958_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP015229.1_3506957_3507668_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP015229.1_3507686_3507998_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP015229.1_3508191_3508515_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP015229.1_3508564_3509170_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP015229.1_3509169_3510597_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP015229.1_3510598_3511507_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP015229.1_3511758_3512796_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP015229.1_3513612_3513906_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP015229.1_3513902_3514826_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP015229.1_3514822_3515473_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP015229.1_3515454_3516201_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP015229.1_3516211_3517267_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP015229.1_3517281_3517818_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP015229.1_3517814_3519377_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP015229.1_3519806_3522506_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|245aa|down_8|NZ_CP015229.1_3523117_3523852_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP015229.1_3523925_3525638_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_001677475.1_ASM167747v1	NZ_CP015229	Escherichia coli strain 06-00048 chromosome, complete genome	5	3538965-3539786	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Unclear	CGGTTTATCCCCGCTCGCGCGGGGAACTC,CGGTTTATCCCCGCTCGCGCGGGGAACTC,CGGTTTATCCCCGCTCGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,13,12	13	Unclear	DEDDh,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4,RT	NA,NA	NA|424aa|up_9|NZ_CP015229.1_3528195_3529467_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP015229.1_3529457_3529718_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP015229.1_3529734_3530310_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP015229.1_3530463_3531324_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP015229.1_3531320_3532100_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP015229.1_3532077_3533487_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP015229.1_3533508_3534963_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP015229.1_3535032_3535818_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP015229.1_3536136_3537414_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP015229.1_3537440_3538919_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP015229.1_3540125_3540797_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|285aa|down_1|NZ_CP015229.1_3541090_3541945_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP015229.1_3542004_3543303_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP015229.1_3543390_3545028_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP015229.1_3545255_3546047_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP015229.1_3546117_3546453_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP015229.1_3546452_3546701_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP015229.1_3546778_3549013_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP015229.1_3549060_3550362_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP015229.1_3550418_3553175_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
