assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001678885.1_ASM167888v1	NZ_CP011069	Streptococcus pyogenes strain STAB09014, complete genome	1	366500-366609	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	ATCAGGATTTAGAAGGTACAGAACAGACAGAT	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|151aa|up_5|NZ_CP011069.1_359800_360253_+,NA|158aa|up_4|NZ_CP011069.1_362267_362741_+,NA|84aa|up_3|NZ_CP011069.1_362993_363245_+,NA|167aa|up_2|NZ_CP011069.1_363617_364118_-,NA|46aa|up_0|NZ_CP011069.1_365285_365423_-,NA|84aa|down_6|NZ_CP011069.1_373124_373376_+,NA|114aa|down_8|NZ_CP011069.1_374241_374583_+	NA|338aa|up_9|NZ_CP011069.1_354734_355748_+	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional	NA|163aa|up_8|NZ_CP011069.1_355751_356240_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|727aa|up_7|NZ_CP011069.1_356206_358387_+	PRK07187, PRK07187, ribonucleoside-diphosphate reductase subunit alpha	NA|251aa|up_6|NZ_CP011069.1_358591_359344_-	cd00233, VIP2, VIP2; A family of actin-ADP-ribosylating toxin	NA|151aa|up_5|NZ_CP011069.1_359800_360253_+	NA	NA|158aa|up_4|NZ_CP011069.1_362267_362741_+	NA	NA|84aa|up_3|NZ_CP011069.1_362993_363245_+	NA	NA|167aa|up_2|NZ_CP011069.1_363617_364118_-	NA	NA|233aa|up_1|NZ_CP011069.1_364385_365084_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|46aa|up_0|NZ_CP011069.1_365285_365423_-	NA	NA|79aa|down_0|NZ_CP011069.1_367352_367589_+	pfam11195, DUF2829, Protein of unknown function (DUF2829)	NA|233aa|down_1|NZ_CP011069.1_367581_368280_+	PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|320aa|down_2|NZ_CP011069.1_368355_369315_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|446aa|down_3|NZ_CP011069.1_369647_370985_+	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters	NA|461aa|down_4|NZ_CP011069.1_371157_372540_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|185aa|down_5|NZ_CP011069.1_372570_373125_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|84aa|down_6|NZ_CP011069.1_373124_373376_+	NA	NA|232aa|down_7|NZ_CP011069.1_373395_374091_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|114aa|down_8|NZ_CP011069.1_374241_374583_+	NA	NA|216aa|down_9|NZ_CP011069.1_374681_375329_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]
GCF_001678885.1_ASM167888v1	NZ_CP011069	Streptococcus pyogenes strain STAB09014, complete genome	2	777187-777486	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	3,4,4	4	TypeII-A,TypeII-C,TypeII-B	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NZ_CP011069.1_766681_767323_+,NA|35aa|down_1|NZ_CP011069.1_778778_778883_+	NA|452aa|up_9|NZ_CP011069.1_765202_766558_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP011069.1_766681_767323_+	NA	NA|377aa|up_7|NZ_CP011069.1_767385_768516_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP011069.1_768525_769278_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP011069.1_769277_770042_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP011069.1_770041_770674_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP011069.1_771118_775225_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP011069.1_775224_776094_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP011069.1_776090_776432_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP011069.1_776421_777084_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|380aa|down_0|NZ_CP011069.1_777634_778774_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|35aa|down_1|NZ_CP011069.1_778778_778883_+	NA	NA|611aa|down_2|NZ_CP011069.1_778942_780775_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|300aa|down_3|NZ_CP011069.1_781261_782161_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_4|NZ_CP011069.1_782346_782784_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_5|NZ_CP011069.1_782913_783933_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_6|NZ_CP011069.1_784139_784565_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_7|NZ_CP011069.1_784583_785075_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_8|NZ_CP011069.1_785091_785901_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_9|NZ_CP011069.1_785897_786725_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
GCF_001678885.1_ASM167888v1	NZ_CP011069	Streptococcus pyogenes strain STAB09014, complete genome	3	1236964-1237061	3	CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type I-C, Type I-U?,Type I-U	TTTCAATCCACTCACCCATGAAGGGTGAGACT	32	0	0	NA	NA	I-C	1	1	TypeI-C,TypeI-U?,TypeI-U	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|105aa|up_6|NZ_CP011069.1_1228303_1228618_-,NA|188aa|down_8|NZ_CP011069.1_1248031_1248595_-	NA|360aa|up_9|NZ_CP011069.1_1222967_1224047_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_8|NZ_CP011069.1_1224119_1225853_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_7|NZ_CP011069.1_1225849_1226590_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|105aa|up_6|NZ_CP011069.1_1228303_1228618_-	NA	NA|405aa|up_5|NZ_CP011069.1_1228619_1229834_-	pfam18454, Mtd_N, Major tropism determinant N-terminal domain	NA|111aa|up_4|NZ_CP011069.1_1232783_1233116_-	pfam10665, Minor_capsid_1, Minor capsid protein	NA|92aa|up_3|NZ_CP011069.1_1233374_1233650_-	TIGR01542, minor_structural_protein_gp61, phage portal protein, putative, A118 family	NA|369aa|up_2|NZ_CP011069.1_1234307_1235414_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP011069.1_1235456_1236080_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP011069.1_1236092_1236803_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP011069.1_1237208_1237502_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_CP011069.1_1237512_1238538_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP011069.1_1238534_1239209_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_CP011069.1_1239210_1240059_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_CP011069.1_1240063_1241959_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NZ_CP011069.1_1241958_1242687_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_CP011069.1_1242819_1245228_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_CP011069.1_1245381_1248030_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_CP011069.1_1248031_1248595_-	NA	NA|67aa|down_9|NZ_CP011069.1_1248591_1248792_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCF_001678885.1_ASM167888v1	NZ_CP011069	Streptococcus pyogenes strain STAB09014, complete genome	4	1820436-1820532	4	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AAAAACCCAATTTTTTTTCGTCTTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|58aa|up_9|NZ_CP011069.1_1815541_1815715_-,NA|538aa|up_8|NZ_CP011069.1_1816001_1817615_-,NA|174aa|up_7|NZ_CP011069.1_1817604_1818126_-,NA|123aa|up_6|NZ_CP011069.1_1818135_1818504_-,NA|64aa|up_5|NZ_CP011069.1_1818412_1818604_-,NA|111aa|up_4|NZ_CP011069.1_1818603_1818936_-,NA|61aa|up_3|NZ_CP011069.1_1818947_1819130_-,NA|90aa|up_2|NZ_CP011069.1_1819350_1819620_-,NA	NA|58aa|up_9|NZ_CP011069.1_1815541_1815715_-	NA	NA|538aa|up_8|NZ_CP011069.1_1816001_1817615_-	NA	NA|174aa|up_7|NZ_CP011069.1_1817604_1818126_-	NA	NA|123aa|up_6|NZ_CP011069.1_1818135_1818504_-	NA	NA|64aa|up_5|NZ_CP011069.1_1818412_1818604_-	NA	NA|111aa|up_4|NZ_CP011069.1_1818603_1818936_-	NA	NA|61aa|up_3|NZ_CP011069.1_1818947_1819130_-	NA	NA|90aa|up_2|NZ_CP011069.1_1819350_1819620_-	NA	NA|189aa|up_1|NZ_CP011069.1_1819649_1820216_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|63aa|up_0|NZ_CP011069.1_1820231_1820420_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|148aa|down_0|NZ_CP011069.1_1820588_1821032_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|388aa|down_1|NZ_CP011069.1_1821211_1822375_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|204aa|down_2|NZ_CP011069.1_1822531_1823143_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|91aa|down_3|NZ_CP011069.1_1823872_1824145_-	COG4466, Veg, Uncharacterized protein conserved in bacteria [Function unknown]	NA|456aa|down_4|NZ_CP011069.1_1824161_1825529_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|down_5|NZ_CP011069.1_1825558_1826011_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|659aa|down_6|NZ_CP011069.1_1826007_1827984_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|633aa|down_7|NZ_CP011069.1_1828073_1829972_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|106aa|down_8|NZ_CP011069.1_1830095_1830413_-	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|374aa|down_9|NZ_CP011069.1_1831188_1832310_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed
