assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001683435.1_ASM168343v1	NZ_CP016358	Escherichia coli strain K-15KW01 chromosome, complete genome	1	848847-848960	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	Orphan	TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	NA,NA	NA|395aa|up_9|NZ_CP016358.1_827749_828934_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP016358.1_829007_829784_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP016358.1_829788_831438_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|NZ_CP016358.1_831438_835953_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP016358.1_835976_836600_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP016358.1_836596_838285_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP016358.1_838433_841061_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP016358.1_841207_841930_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1253aa|up_1|NZ_CP016358.1_842069_845828_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP016358.1_846509_848795_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP016358.1_848984_850115_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP016358.1_850114_850369_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP016358.1_850422_851073_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP016358.1_851275_852352_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP016358.1_852356_853715_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP016358.1_853987_855616_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP016358.1_855605_856865_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP016358.1_856861_858052_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|320aa|down_8|NZ_CP016358.1_858244_859204_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP016358.1_859216_859402_+	PRK09956, PRK09956, ISNCY family transposase
GCF_001683435.1_ASM168343v1	NZ_CP016358	Escherichia coli strain K-15KW01 chromosome, complete genome	2	2751045-2751246	1	PILER-CR	no		DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	NA,NA	NA|252aa|up_9|NZ_CP016358.1_2742595_2743351_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP016358.1_2743364_2743970_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP016358.1_2743966_2745607_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP016358.1_2745685_2745955_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP016358.1_2745958_2746474_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP016358.1_2746476_2747253_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP016358.1_2747294_2748077_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP016358.1_2748073_2748562_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP016358.1_2748728_2750222_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP016358.1_2750267_2750969_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP016358.1_2751250_2752414_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP016358.1_2752423_2754613_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP016358.1_2754802_2756134_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_CP016358.1_2756133_2756748_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_CP016358.1_2756786_2758238_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_CP016358.1_2758249_2758795_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_CP016358.1_2764383_2764911_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_CP016358.1_2764892_2765477_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_CP016358.1_2765546_2765816_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_CP016358.1_2765892_2766879_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_001683435.1_ASM168343v1	NZ_CP016358	Escherichia coli strain K-15KW01 chromosome, complete genome	3	2811678-2811804	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	Orphan	GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	NA,NA	NA|73aa|up_9|NZ_CP016358.1_2800934_2801153_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|310aa|up_8|NZ_CP016358.1_2801367_2802297_-	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional	NA|212aa|up_7|NZ_CP016358.1_2802293_2802929_-	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit	NA|301aa|up_6|NZ_CP016358.1_2802925_2803828_-	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|1017aa|up_5|NZ_CP016358.1_2803840_2806891_-	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|278aa|up_4|NZ_CP016358.1_2807084_2807918_+	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|228aa|up_3|NZ_CP016358.1_2807946_2808630_+	pfam12889, DUF3829, Protein of unknown function (DUF3829)	NA|465aa|up_2|NZ_CP016358.1_2809050_2810445_+	pfam16966, Porin_8, Porin-like glycoporin RafY	NA|105aa|up_1|NZ_CP016358.1_2810485_2810800_-	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase	NA|275aa|up_0|NZ_CP016358.1_2810809_2811634_-	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	NA|420aa|down_0|NZ_CP016358.1_2811808_2813068_-	PRK01076, PRK01076, L-rhamnose isomerase; Provisional	NA|490aa|down_1|NZ_CP016358.1_2813064_2814534_-	PRK10640, rhaB, rhamnulokinase; Provisional	NA|279aa|down_2|NZ_CP016358.1_2814821_2815658_+	PRK13503, PRK13503, HTH-type transcriptional activator RhaS	NA|313aa|down_3|NZ_CP016358.1_2815641_2816580_+	PRK13500, PRK13500, HTH-type transcriptional activator RhaR	NA|345aa|down_4|NZ_CP016358.1_2816576_2817611_-	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT)	NA|207aa|down_5|NZ_CP016358.1_2817896_2818517_+	PRK10925, PRK10925, superoxide dismutase [Mn]	NA|328aa|down_6|NZ_CP016358.1_2818776_2819760_+	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter	NA|225aa|down_7|NZ_CP016358.1_2819908_2820583_+	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional	NA|458aa|down_8|NZ_CP016358.1_2820754_2822128_-	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|233aa|down_9|NZ_CP016358.1_2822124_2822823_-	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR
GCF_001683435.1_ASM168343v1	NZ_CP016358	Escherichia coli strain K-15KW01 chromosome, complete genome	4	3279469-3279608	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	NA,NA	NA|335aa|up_9|NZ_CP016358.1_3268014_3269019_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NZ_CP016358.1_3269029_3269974_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NZ_CP016358.1_3269984_3271205_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NZ_CP016358.1_3271882_3272335_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP016358.1_3272379_3273384_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP016358.1_3273545_3273962_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP016358.1_3274138_3274642_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP016358.1_3274834_3276022_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP016358.1_3276068_3278924_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP016358.1_3278923_3279367_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP016358.1_3279624_3281136_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP016358.1_3281402_3282503_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP016358.1_3282502_3283585_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP016358.1_3283745_3285248_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP016358.1_3285325_3286324_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP016358.1_3286390_3287710_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP016358.1_3287774_3288539_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP016358.1_3288562_3289594_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP016358.1_3289810_3290374_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP016358.1_3290377_3291397_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_001683435.1_ASM168343v1	NZ_CP016358	Escherichia coli strain K-15KW01 chromosome, complete genome	5	3988600-3988735	4	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGC	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	NA,NA	NA|491aa|up_9|NZ_CP016358.1_3976092_3977565_-	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional	NA|196aa|up_8|NZ_CP016358.1_3977578_3978166_-	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|678aa|up_7|NZ_CP016358.1_3978294_3980328_+	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|363aa|up_6|NZ_CP016358.1_3981203_3982292_+	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|311aa|up_5|NZ_CP016358.1_3982333_3983266_-	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|166aa|up_4|NZ_CP016358.1_3983357_3983855_-	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|202aa|up_3|NZ_CP016358.1_3984112_3984718_+	sd00045, ANK, ankyrin repeats	NA|288aa|up_2|NZ_CP016358.1_3984757_3985621_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|516aa|up_1|NZ_CP016358.1_3985610_3987158_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|473aa|up_0|NZ_CP016358.1_3987157_3988576_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|317aa|down_0|NZ_CP016358.1_3988822_3989773_+	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|461aa|down_1|NZ_CP016358.1_3989782_3991165_+	PRK06846, PRK06846, putative deaminase; Validated	NA|350aa|down_2|NZ_CP016358.1_3991541_3992591_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|225aa|down_3|NZ_CP016358.1_3993472_3994147_-	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|92aa|down_4|NZ_CP016358.1_3994293_3994569_+	PRK09929, PRK09929, hypothetical protein; Provisional	NA|529aa|down_5|NZ_CP016358.1_3994669_3996256_-	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|297aa|down_6|NZ_CP016358.1_3996494_3997385_+	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|390aa|down_7|NZ_CP016358.1_3997544_3998714_+	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|484aa|down_8|NZ_CP016358.1_3998747_4000199_+	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|629aa|down_9|NZ_CP016358.1_4000238_4002125_+	PRK10524, prpE, propionyl-CoA synthetase; Provisional
GCF_001683435.1_ASM168343v1	NZ_CP016358	Escherichia coli strain K-15KW01 chromosome, complete genome	6	4517048-4517195	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,DinG,cas3,csa3,RT,PD-DExK,WYL,cas14j	NA|86aa|up_8|NZ_CP016358.1_4508821_4509079_+,NA|58aa|up_6|NZ_CP016358.1_4509861_4510035_-,NA|94aa|up_3|NZ_CP016358.1_4512785_4513067_+,NA|80aa|up_2|NZ_CP016358.1_4513351_4513591_+,NA	NA|585aa|up_9|NZ_CP016358.1_4506778_4508533_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|86aa|up_8|NZ_CP016358.1_4508821_4509079_+	NA	NA|141aa|up_7|NZ_CP016358.1_4509075_4509498_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|58aa|up_6|NZ_CP016358.1_4509861_4510035_-	NA	NA|638aa|up_5|NZ_CP016358.1_4510127_4512041_+	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|162aa|up_4|NZ_CP016358.1_4512297_4512783_+	pfam07278, DUF1441, Protein of unknown function (DUF1441)	NA|94aa|up_3|NZ_CP016358.1_4512785_4513067_+	NA	NA|80aa|up_2|NZ_CP016358.1_4513351_4513591_+	NA	NA|107aa|up_1|NZ_CP016358.1_4514207_4514528_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP016358.1_4514558_4516835_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP016358.1_4517578_4517797_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP016358.1_4518081_4518786_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP016358.1_4518827_4520549_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP016358.1_4520549_4522316_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP016358.1_4522438_4523404_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP016358.1_4523947_4524442_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1340aa|down_6|NZ_CP016358.1_4524576_4528596_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP016358.1_4528754_4529366_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP016358.1_4529376_4530720_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP016358.1_4530810_4532103_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
