The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016439	Streptococcus thermophilus strain CS8, complete genome	1791656	127053	191924	1791656	tRNA,bacteriocin,transposase,integrase	Streptococcus_phage(32.35%)	65	179182:179199	187121:187138
WP_011227130.1|127053_128232_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.9	9.1e-35
WP_011227128.1|129283_130468_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_011225850.1|130489_131401_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	41.4	2.8e-60
WP_059257326.1|133251_134427_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.4	2.6e-34
WP_041827013.1|134617_136798_+	copper-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	32.7	2.4e-65
WP_002947843.1|136918_138094_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.8	1.8e-35
WP_011681063.1|138424_138625_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	89.4	2.9e-26
WP_041827011.1|138895_139105_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	53.1	1.5e-12
WP_080998416.1|139235_139454_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_011225841.1|139404_139641_-	peptide hydrolase	NA	NA	NA	NA	NA
WP_101361296.1|139647_140217_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_011227121.1|140176_140398_-	dipeptidase, truncated	NA	NA	NA	NA	NA
WP_002945081.1|140415_141327_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	64.7	7.1e-104
WP_011227120.1|141323_142298_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	73.5	8.9e-137
WP_011227119.1|142294_143185_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.9	3.3e-05
WP_011227118.1|143165_143936_-	DUF1003 domain-containing protein	NA	NA	NA	NA	NA
WP_011225836.1|144140_144329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002946191.1|145148_145640_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	56.7	1.4e-45
WP_011225834.1|145759_146476_-	7-carboxy-7-deazaguanine synthase QueE	NA	E7DN68	Pneumococcus_phage	48.1	1.8e-62
WP_002950528.1|146468_146912_-	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	55.6	7.9e-40
WP_002946194.1|146911_147565_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.4	2.8e-62
WP_002950526.1|147738_148119_-	RidA family protein	NA	NA	NA	NA	NA
WP_004197260.1|149200_149428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022096456.1|149443_149608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011227117.1|149634_150981_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	31.4	3.3e-57
WP_011227116.1|151017_152199_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_022096455.1|152203_152686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011227114.1|152830_155317_-	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	47.9	6.1e-214
WP_011227113.1|155412_156048_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	60.0	1.0e-72
WP_011225826.1|156151_157108_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011227112.1|157109_158177_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_041827009.1|158169_159708_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.4	1.9e-16
WP_041827008.1|159821_160892_-	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	38.3	2.3e-53
WP_082302298.1|162854_163091_-	hypothetical protein	NA	A0A0H3UZD4	Geobacillus_virus	75.7	4.2e-24
WP_002947585.1|163106_163289_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	57.6	7.4e-13
WP_041827007.1|163304_163895_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002947590.1|164219_165140_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	36.6	3.8e-36
WP_002947597.1|165208_165445_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_087009847.1|165580_167150_+|transposase	IS3-like element ISSth1b family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	50.9	2.0e-53
WP_041827135.1|167220_167931_-	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	29.8	2.0e-05
WP_011225814.1|167938_168262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002950475.1|168339_168639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101361297.1|168642_168975_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_011227107.1|169486_171157_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_002948206.1|171350_172034_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_014608202.1|172026_172572_+	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	35.6	4.4e-24
WP_041827006.1|172599_173172_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_011225808.1|173254_174973_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	83.0	6.4e-271
WP_002950455.1|175112_175988_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_002950451.1|176176_178426_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_011225805.1|178753_179089_-	hypothetical protein	NA	NA	NA	NA	NA
179182:179199	attL	TTTGCTTTCCTTTTTGCT	NA	NA	NA	NA
WP_011227104.1|179204_180371_-|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	69.3	1.9e-154
WP_065429493.1|180450_181299_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041827005.1|181427_181625_+	helix-turn-helix transcriptional regulator	NA	A0A1X9I5U5	Streptococcus_phage	60.0	7.3e-14
WP_148148892.1|181834_182140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014608198.1|182143_182338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011227100.1|182351_182588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014608197.1|182604_182916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011227098.1|182917_183190_+	MerR family transcriptional regulator	NA	A0A1X9I5U9	Streptococcus_phage	50.6	1.4e-18
WP_011227097.1|183204_184065_+	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	62.9	1.3e-102
WP_011227096.1|184054_185557_+	DNA primase	NA	Q9AZI5	Lactococcus_phage	35.7	2.2e-62
WP_011227095.1|185857_186043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011227094.1|186059_186335_+	hypothetical protein	NA	A0A1X9I5U4	Streptococcus_phage	44.0	2.3e-13
WP_011227092.1|187392_189111_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	36.2	2.7e-27
187121:187138	attR	TTTGCTTTCCTTTTTGCT	NA	NA	NA	NA
WP_011227091.1|189287_191924_+	calcium-translocating P-type ATPase, PMCA-type	NA	M1HK51	Paramecium_bursaria_Chlorella_virus	29.2	3.7e-84
>prophage 2
NZ_CP016439	Streptococcus thermophilus strain CS8, complete genome	1791656	196286	205211	1791656		Bacillus_phage(50.0%)	8	NA	NA
WP_011225796.1|196286_197837_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.5	9.2e-43
WP_002885174.1|197845_197977_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_041827002.1|198153_199902_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.7	2.7e-51
WP_011225793.1|199891_201631_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.2	2.6e-46
WP_041827001.1|201663_202275_-	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	41.6	3.5e-22
WP_011225791.1|202276_203254_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_011227085.1|203260_204511_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.1	2.0e-96
WP_011227084.1|204605_205211_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	32.7	1.0e-18
>prophage 3
NZ_CP016439	Streptococcus thermophilus strain CS8, complete genome	1791656	313693	323640	1791656		Streptococcus_phage(85.71%)	9	NA	NA
WP_011225709.1|313693_314371_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	99.6	5.6e-122
WP_011227016.1|314367_315531_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	99.2	5.0e-219
WP_002947233.1|315691_317878_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	99.2	0.0e+00
WP_011225708.1|318375_319680_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	99.5	3.2e-246
WP_002950250.1|319888_320344_+	YueI family protein	NA	W6LLD2	Streptococcus_phage	98.7	1.3e-77
WP_011227015.1|320382_321498_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	99.3	4.4e-156
WP_011225706.1|321512_322277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011225705.1|322382_322580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004197422.1|322638_323640_-	catabolite control protein A	NA	C6ZCU4	Enterobacteria_phage	27.3	3.7e-21
>prophage 4
NZ_CP016439	Streptococcus thermophilus strain CS8, complete genome	1791656	564156	571875	1791656	transposase	Streptococcus_phage(50.0%)	8	NA	NA
WP_041826943.1|564156_565110_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	35.2	1.3e-36
WP_011225518.1|565139_565688_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_002949747.1|565766_566429_-	ComF family protein	NA	NA	NA	NA	NA
WP_011226886.1|566409_567729_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	52.8	7.6e-123
WP_002949745.1|567783_568410_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	60.4	6.7e-69
WP_002947179.1|568511_569438_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	79.2	3.7e-140
WP_002947183.1|570400_571111_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.7	2.2e-15
WP_002947187.1|571110_571875_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	5.2e-15
>prophage 5
NZ_CP016439	Streptococcus thermophilus strain CS8, complete genome	1791656	916540	932113	1791656	tRNA	Streptococcus_phage(30.0%)	15	NA	NA
WP_011226709.1|916540_918163_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	25.3	5.4e-46
WP_011227628.1|918229_919102_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.9	3.7e-33
WP_002952292.1|919529_920552_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_011227627.1|920728_922210_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.3	6.8e-96
WP_002947786.1|922378_923479_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_002947785.1|923481_923859_-	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	68.4	1.7e-22
WP_011227626.1|923936_925187_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	39.6	1.1e-91
WP_011227625.1|925188_926466_+	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	28.3	9.6e-22
WP_011226703.1|926524_927382_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011227624.1|927394_927937_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_002947776.1|927949_928780_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	31.3	4.5e-20
WP_002947774.1|928755_929598_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.2	2.1e-17
WP_011226702.1|929590_930385_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_011226701.1|930688_931243_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XCL7	Enterococcus_phage	42.2	3.1e-25
WP_011226700.1|931483_932113_+	hypothetical protein	NA	Q4Z8Z7	Staphylococcus_phage	46.2	4.7e-22
