assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001685415.1_ASM168541v1	NZ_CP014989	Serinicoccus hydrothermalis strain JLT9 chromosome, complete genome	1	1704980-1705200	1	PILER-CR	no		cas4,WYL,DEDDh,DinG,cas3,csa3	Orphan	CCGGACCAGGGCTGGACCGACCAGGGCACCGC	32	0	0	NA	NA	NA	3	3	Orphan	cas4,WYL,DEDDh,DinG,cas3,csa3	NA,NA|466aa|down_5|NZ_CP014989.1_1709653_1711051_-,NA|141aa|down_6|NZ_CP014989.1_1711155_1711578_-	NA|155aa|up_9|NZ_CP014989.1_1693965_1694430_-	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|436aa|up_8|NZ_CP014989.1_1694494_1695802_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|326aa|up_7|NZ_CP014989.1_1695873_1696851_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|136aa|up_6|NZ_CP014989.1_1697072_1697480_-	pfam11349, DUF3151, Protein of unknown function (DUF3151)	NA|343aa|up_5|NZ_CP014989.1_1697476_1698505_-	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|532aa|up_4|NZ_CP014989.1_1698617_1700213_+	COG2308, COG2308, Uncharacterized conserved protein [Function unknown]	NA|312aa|up_3|NZ_CP014989.1_1700206_1701142_+	pfam04168, Alpha-E, A predicted alpha-helical domain with a conserved ER motif	NA|281aa|up_2|NZ_CP014989.1_1701141_1701984_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|268aa|up_1|NZ_CP014989.1_1701996_1702800_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|247aa|up_0|NZ_CP014989.1_1702804_1703545_-	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|183aa|down_0|NZ_CP014989.1_1705658_1706207_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|443aa|down_1|NZ_CP014989.1_1706247_1707576_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|262aa|down_2|NZ_CP014989.1_1707572_1708358_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|267aa|down_3|NZ_CP014989.1_1708396_1709197_-	PRK01060, PRK01060, endonuclease IV; Provisional	NA|137aa|down_4|NZ_CP014989.1_1709242_1709653_+	COG3427, COG3427, Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]	NA|466aa|down_5|NZ_CP014989.1_1709653_1711051_-	NA	NA|141aa|down_6|NZ_CP014989.1_1711155_1711578_-	NA	NA|266aa|down_7|NZ_CP014989.1_1711759_1712557_+	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|381aa|down_8|NZ_CP014989.1_1712657_1713800_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|194aa|down_9|NZ_CP014989.1_1713880_1714462_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein
GCF_001685415.1_ASM168541v1	NZ_CP014989	Serinicoccus hydrothermalis strain JLT9 chromosome, complete genome	2	2133600-2133689	1	CRISPRCasFinder	no	DEDDh	cas4,WYL,DEDDh,DinG,cas3,csa3	Unclear	TGTCGAGATGCAGCCAATCTTGCGCAGCGACC	32	1	1	2133632-2133657	NZ_CP014989.1_2190472-2190497	NA	1	1	Orphan	cas4,WYL,DEDDh,DinG,cas3,csa3	NA|325aa|up_2|NZ_CP014989.1_2128120_2129095_-,NA|233aa|down_1|NZ_CP014989.1_2134739_2135438_-,NA|199aa|down_3|NZ_CP014989.1_2136330_2136927_-,NA|127aa|down_8|NZ_CP014989.1_2143177_2143558_+,NA|105aa|down_9|NZ_CP014989.1_2143554_2143869_+	NA|215aa|up_9|NZ_CP014989.1_2120890_2121535_-	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|969aa|up_8|NZ_CP014989.1_2121728_2124635_+	PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|141aa|up_7|NZ_CP014989.1_2124631_2125054_+	PRK07946, PRK07946, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|507aa|up_6|NZ_CP014989.1_2125083_2126604_+	PRK12665, PRK12665, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|202aa|up_5|NZ_CP014989.1_2126600_2127206_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|108aa|up_4|NZ_CP014989.1_2127202_2127526_+	PRK07948, PRK07948, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|113aa|up_3|NZ_CP014989.1_2127522_2127861_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|325aa|up_2|NZ_CP014989.1_2128120_2129095_-	NA	NA|432aa|up_1|NZ_CP014989.1_2129287_2130583_-	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|886aa|up_0|NZ_CP014989.1_2130928_2133586_+	PRK07773, PRK07773, replicative DNA helicase; Validated	NA|288aa|down_0|NZ_CP014989.1_2133807_2134671_+	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC	NA|233aa|down_1|NZ_CP014989.1_2134739_2135438_-	NA	DEDDh|282aa|down_2|NZ_CP014989.1_2135478_2136324_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|199aa|down_3|NZ_CP014989.1_2136330_2136927_-	NA	NA|270aa|down_4|NZ_CP014989.1_2137713_2138523_+	NF033179, TnsA_like_Actin, TnsA-like heteromeric transposase endonuclease subunit	NA|734aa|down_5|NZ_CP014989.1_2138519_2140721_+	pfam00665, rve, Integrase core domain	NA|350aa|down_6|NZ_CP014989.1_2140722_2141772_+	pfam05621, TniB, Bacterial TniB protein	NA|471aa|down_7|NZ_CP014989.1_2141768_2143181_+	pfam06527, TniQ, TniQ	NA|127aa|down_8|NZ_CP014989.1_2143177_2143558_+	NA	NA|105aa|down_9|NZ_CP014989.1_2143554_2143869_+	NA
GCF_001685415.1_ASM168541v1	NZ_CP014989	Serinicoccus hydrothermalis strain JLT9 chromosome, complete genome	3	2427883-2428008	2	CRISPRCasFinder	no	csa3	cas4,WYL,DEDDh,DinG,cas3,csa3	Type I-A	CCCGGGGAGGATCGGTGCAGGCG	23	0	0	NA	NA	NA	2	2	Orphan	cas4,WYL,DEDDh,DinG,cas3,csa3	NA|606aa|up_9|NZ_CP014989.1_2412268_2414086_+,NA|125aa|down_1|NZ_CP014989.1_2428790_2429165_+,NA|137aa|down_9|NZ_CP014989.1_2437919_2438330_+	NA|606aa|up_9|NZ_CP014989.1_2412268_2414086_+	NA	NA|108aa|up_8|NZ_CP014989.1_2414107_2414431_+	pfam01527, HTH_Tnp_1, Transposase	NA|340aa|up_7|NZ_CP014989.1_2414385_2415405_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|877aa|up_6|NZ_CP014989.1_2415425_2418056_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|500aa|up_5|NZ_CP014989.1_2418957_2420457_+	COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]	NA|811aa|up_4|NZ_CP014989.1_2420453_2422886_+	COG4631, XdhB, Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]	NA|276aa|up_3|NZ_CP014989.1_2422887_2423715_+	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC	NA|453aa|up_2|NZ_CP014989.1_2423711_2425070_+	PRK09228, PRK09228, guanine deaminase; Provisional	NA|436aa|up_1|NZ_CP014989.1_2425293_2426601_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|405aa|up_0|NZ_CP014989.1_2426654_2427869_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|256aa|down_0|NZ_CP014989.1_2428026_2428794_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|125aa|down_1|NZ_CP014989.1_2428790_2429165_+	NA	NA|504aa|down_2|NZ_CP014989.1_2429168_2430680_+	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|271aa|down_3|NZ_CP014989.1_2430682_2431495_-	pfam13624, SurA_N_3, SurA N-terminal domain	NA|657aa|down_4|NZ_CP014989.1_2431732_2433703_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|159aa|down_5|NZ_CP014989.1_2433754_2434231_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|144aa|down_6|NZ_CP014989.1_2435228_2435660_-	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|423aa|down_7|NZ_CP014989.1_2435764_2437033_-	pfam01566, Nramp, Natural resistance-associated macrophage protein	NA|275aa|down_8|NZ_CP014989.1_2437098_2437923_+	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|137aa|down_9|NZ_CP014989.1_2437919_2438330_+	NA
GCF_001685415.1_ASM168541v1	NZ_CP014989	Serinicoccus hydrothermalis strain JLT9 chromosome, complete genome	4	2479382-2479481	3	CRISPRCasFinder	no		cas4,WYL,DEDDh,DinG,cas3,csa3	Orphan	GACGGAGGAAGCGTGGGGCAGGGA	24	0	0	NA	NA	NA	1	1	Orphan	cas4,WYL,DEDDh,DinG,cas3,csa3	NA|152aa|up_9|NZ_CP014989.1_2469524_2469980_-,NA|227aa|up_3|NZ_CP014989.1_2475193_2475874_-,NA|210aa|down_3|NZ_CP014989.1_2483129_2483759_+	NA|152aa|up_9|NZ_CP014989.1_2469524_2469980_-	NA	NA|282aa|up_8|NZ_CP014989.1_2470221_2471067_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|362aa|up_7|NZ_CP014989.1_2471063_2472149_-	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]	NA|350aa|up_6|NZ_CP014989.1_2472145_2473195_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|359aa|up_5|NZ_CP014989.1_2473191_2474268_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|277aa|up_4|NZ_CP014989.1_2474390_2475221_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|227aa|up_3|NZ_CP014989.1_2475193_2475874_-	NA	NA|426aa|up_2|NZ_CP014989.1_2475880_2477158_-	PRK08639, PRK08639, threonine dehydratase; Validated	NA|340aa|up_1|NZ_CP014989.1_2477201_2478221_-	TIGR02483, ATP-dependent_6-phosphofructokinase_1, phosphofructokinase	NA|204aa|up_0|NZ_CP014989.1_2478410_2479022_+	pfam02632, BioY, BioY family	NA|312aa|down_0|NZ_CP014989.1_2479518_2480454_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|141aa|down_1|NZ_CP014989.1_2480562_2480985_-	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)	NA|638aa|down_2|NZ_CP014989.1_2481053_2482967_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|210aa|down_3|NZ_CP014989.1_2483129_2483759_+	NA	NA|194aa|down_4|NZ_CP014989.1_2483776_2484358_+	cd05829, Sortase_F, Sortase domain found in the class F family of sortases	NA|416aa|down_5|NZ_CP014989.1_2484422_2485670_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|455aa|down_6|NZ_CP014989.1_2485730_2487095_+	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase	NA|172aa|down_7|NZ_CP014989.1_2487147_2487663_+	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|531aa|down_8|NZ_CP014989.1_2487719_2489312_+	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]	NA|122aa|down_9|NZ_CP014989.1_2489311_2489677_+	pfam13826, DUF4188, Domain of unknown function (DUF4188)
GCF_001685415.1_ASM168541v1	NZ_CP014989	Serinicoccus hydrothermalis strain JLT9 chromosome, complete genome	5	2492447-2492628	4	CRISPRCasFinder	no		cas4,WYL,DEDDh,DinG,cas3,csa3	Orphan	ACGGGCTTGACCGGGGAGGATCGGTGCACCTGCACCGATCCT	42	0	0	NA	NA	NA	1	1	Orphan	cas4,WYL,DEDDh,DinG,cas3,csa3	NA|210aa|up_7|NZ_CP014989.1_2483129_2483759_+,NA|79aa|down_3|NZ_CP014989.1_2497829_2498066_-	NA|141aa|up_9|NZ_CP014989.1_2480562_2480985_-	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)	NA|638aa|up_8|NZ_CP014989.1_2481053_2482967_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|210aa|up_7|NZ_CP014989.1_2483129_2483759_+	NA	NA|194aa|up_6|NZ_CP014989.1_2483776_2484358_+	cd05829, Sortase_F, Sortase domain found in the class F family of sortases	NA|416aa|up_5|NZ_CP014989.1_2484422_2485670_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|455aa|up_4|NZ_CP014989.1_2485730_2487095_+	PRK12853, PRK12853, glucose-6-phosphate dehydrogenase	NA|172aa|up_3|NZ_CP014989.1_2487147_2487663_+	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|531aa|up_2|NZ_CP014989.1_2487719_2489312_+	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]	NA|122aa|up_1|NZ_CP014989.1_2489311_2489677_+	pfam13826, DUF4188, Domain of unknown function (DUF4188)	NA|921aa|up_0|NZ_CP014989.1_2489663_2492426_+	PRK07877, PRK07877, Rv1355c family protein	NA|1097aa|down_0|NZ_CP014989.1_2492654_2495945_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|157aa|down_1|NZ_CP014989.1_2496058_2496529_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|422aa|down_2|NZ_CP014989.1_2496535_2497801_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|79aa|down_3|NZ_CP014989.1_2497829_2498066_-	NA	NA|689aa|down_4|NZ_CP014989.1_2498146_2500213_-	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|138aa|down_5|NZ_CP014989.1_2500456_2500870_-	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs	NA|79aa|down_6|NZ_CP014989.1_2500866_2501103_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|504aa|down_7|NZ_CP014989.1_2501208_2502720_+	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]	NA|208aa|down_8|NZ_CP014989.1_2502729_2503353_+	pfam14014, DUF4230, Protein of unknown function (DUF4230)	NA|341aa|down_9|NZ_CP014989.1_2503416_2504439_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter
GCF_001685415.1_ASM168541v1	NZ_CP014989	Serinicoccus hydrothermalis strain JLT9 chromosome, complete genome	6	2586168-2586266	5	CRISPRCasFinder	no		cas4,WYL,DEDDh,DinG,cas3,csa3	Orphan	CTCGAATCGTCGCCATGGCGAACAAA	26	0	0	NA	NA	NA	1	1	Orphan	cas4,WYL,DEDDh,DinG,cas3,csa3	NA,NA	NA|267aa|up_9|NZ_CP014989.1_2575627_2576428_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|456aa|up_8|NZ_CP014989.1_2576501_2577869_-	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]	NA|189aa|up_7|NZ_CP014989.1_2578027_2578594_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|281aa|up_6|NZ_CP014989.1_2578645_2579488_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|123aa|up_5|NZ_CP014989.1_2579542_2579911_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|131aa|up_4|NZ_CP014989.1_2580008_2580401_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|up_3|NZ_CP014989.1_2580384_2581641_+	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|862aa|up_2|NZ_CP014989.1_2581817_2584403_+	COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]	NA|257aa|up_1|NZ_CP014989.1_2584399_2585170_+	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|326aa|up_0|NZ_CP014989.1_2585166_2586144_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|311aa|down_0|NZ_CP014989.1_2586355_2587288_-	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase	NA|621aa|down_1|NZ_CP014989.1_2587328_2589191_+	pfam04122, CW_binding_2, Putative cell wall binding repeat 2	NA|462aa|down_2|NZ_CP014989.1_2589227_2590613_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|342aa|down_3|NZ_CP014989.1_2590609_2591635_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|380aa|down_4|NZ_CP014989.1_2591634_2592774_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|165aa|down_5|NZ_CP014989.1_2592883_2593378_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|217aa|down_6|NZ_CP014989.1_2593414_2594065_-	PRK10958, PRK10958, leucine export protein LeuE; Provisional	NA|131aa|down_7|NZ_CP014989.1_2594121_2594514_-	cd09854, PIN_VapC-like, VapC-like PIN domains of VapC and Smg6 ribonucleases, ribosome assembly factor NOB1, rRNA-processing protein Fcf1, Archaeoglobus fulgidus AF0591 protein, and homologs	NA|88aa|down_8|NZ_CP014989.1_2594510_2594774_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|311aa|down_9|NZ_CP014989.1_2594937_2595870_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases
