The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	0	70035	4110002	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45112_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64066_64384_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	77633	136107	4110002	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79599_81474_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82821_83526_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83522_84629_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84890_85484_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85480_86668_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86730_87990_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88013_89102_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89109_90210_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90213_90789_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90792_91845_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96202_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97338_98178_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99110_99713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101787_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102807_103083_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103090_103753_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	164892	225403	4110002	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169126_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174134_174314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|181332_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|195400_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|207169_208219_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|208215_209040_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	233335	286923	4110002	transposase,tRNA,protease	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236256_236430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|274099_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	390856	448365	4110002	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391793_391961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|400017_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401026_401170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403583_404825_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411329_412307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_077274092.1|417488_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	589370	650561	4110002	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590796_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|611449_612445_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|618818_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622997_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|636678_636843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638047_639481_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|640019_640688_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646243_647125_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	655879	702076	4110002	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(17.39%)	53	NA	NA
WP_003814219.1|655879_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995786.1|666057_666219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|678492_678705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|679861_680182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|680174_680873_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|680887_681109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|682752_683202_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|683188_684466_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|689340_689988_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690795_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	708242	763220	4110002	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|712621_713938_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713969_714467_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714553_715243_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715242_716292_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716288_717083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717251_717602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717577_718135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|719059_719278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|719264_720215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|722493_723582_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723584_725027_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725131_726277_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726308_727106_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727130_728690_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728686_731059_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731168_732272_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732271_732964_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733107_733809_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733793_734171_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734902_735853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|735839_735983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|736012_736885_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737225_737444_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737483_738863_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738904_740302_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740341_741994_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741997_742882_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742881_743823_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743901_745521_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745687_746503_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746570_747140_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747140_748091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748745_749843_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749876_751142_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005012067.1|751299_752250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|752348_753299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757815_758340_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758299_759250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759471_761667_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761739_762147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|762094_762283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	885809	953785	4110002	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|885809_886826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894460_896692_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902411_903362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903358_904078_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904198_906358_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906448_906718_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906806_907013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907011_907539_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907557_908337_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908504_909521_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909593_910085_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910095_911811_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912974_913925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|913921_915772_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|916899_917052_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|917160_917328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929332_930208_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930233_931289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|934548_934686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|934672_935623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938376_939327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|939761_941579_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	976963	1047230	4110002	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976963_977914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977994_978906_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978966_980112_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980131_981046_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981117_981867_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981866_982796_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983039_984866_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984948_985590_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985779_986814_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988650_989715_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990512_991421_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992908_994183_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994336_994717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994724_995597_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995902_996283_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996493_997219_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997314_998265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998369_999419_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999556_1000573_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002081_1002654_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002713_1003445_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003496_1004414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005221_1008401_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008397_1009780_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009849_1010101_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1010246_1010897_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011047_1013162_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013237_1014089_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014085_1014712_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014708_1016463_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016755_1019461_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019473_1021135_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021147_1022938_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023159_1024335_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024377_1025328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025426_1026167_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026361_1028398_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028415_1029426_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029543_1030737_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030766_1031540_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031536_1032727_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032752_1033691_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033687_1036036_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1036190_1036898_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036935_1038069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038161_1038314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038345_1038894_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038912_1039398_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039575_1040514_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040516_1040834_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040879_1041824_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043504_1044155_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044208_1044544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044540_1045401_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045417_1045699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045772_1046036_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046279_1047230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1059448	1117879	4110002	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1059448_1060465_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061295_1062303_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062299_1063943_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1063939_1064842_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064967_1065441_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065430_1066453_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066449_1067877_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068814_1069831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070163_1071099_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071148_1073029_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073095_1073440_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073584_1074721_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074717_1075791_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075948_1077385_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077475_1078117_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078452_1079469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077068988.1|1081345_1081525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081511_1082462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083664_1085086_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085349_1086066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086150_1086468_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086508_1086922_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086923_1087283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087325_1088870_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088953_1089784_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1089818_1090973_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091015_1091888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092004_1094293_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095499_1095964_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095990_1096941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097308_1098085_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098129_1098987_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099008_1100025_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100159_1101200_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101394_1103476_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103711_1105205_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105435_1106230_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106450_1107809_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107805_1108648_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108666_1110553_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1110790_1111423_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111441_1112044_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1112047_1112209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1112195_1113146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1113948_1114749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1114792_1115779_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115918_1116932_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116928_1117879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1153230	1218802	4110002	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153230_1155027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155026_1155995_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156064_1156910_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156977_1157532_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157578_1158529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158627_1159260_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159424_1161707_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161861_1164558_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164683_1165172_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167582_1170453_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170498_1171713_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171942_1173370_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1173410_1174559_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174571_1175330_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175417_1176320_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176316_1177267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177396_1178380_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178434_1179157_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180635_1181991_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182071_1184447_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184611_1186687_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186748_1187549_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187650_1188613_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188600_1189356_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189463_1191101_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191168_1191906_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192008_1192584_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192756_1193293_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1193295_1193640_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193655_1194501_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194539_1195919_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195996_1196878_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196976_1197927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197923_1198334_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198441_1199296_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199288_1200251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200296_1201421_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1201532_1202405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202529_1203309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203462_1204884_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205318_1207016_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1207044_1207167_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1207242_1208184_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208510_1209257_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209264_1210191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210312_1211230_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211269_1212223_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212247_1212826_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214499_1215108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215185_1215539_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215622_1216612_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216814_1217765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217851_1218802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1270677	1327888	4110002	transposase	Klosneuvirus(16.67%)	52	NA	NA
WP_010931070.1|1270677_1271628_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275374_1275986_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276208_1277669_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277765_1279358_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_076879563.1|1279344_1279623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931039.1|1279681_1279969_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279970_1281311_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281406_1282096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282108_1283539_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285263_1286085_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286095_1287667_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287695_1288673_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288699_1289503_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289499_1290294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290301_1291537_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291529_1291964_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292713_1293664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294285_1296013_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296124_1297483_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076879564.1|1297603_1297789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297775_1298726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298766_1299837_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299859_1300738_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300909_1301881_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302043_1302886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303047_1303728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303721_1304891_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304887_1305919_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305962_1307204_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307238_1308771_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308851_1309475_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309505_1310117_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310152_1310623_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311054_1312059_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312095_1313610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313613_1314573_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314601_1315405_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315406_1317041_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317124_1318186_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318384_1318654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318657_1319182_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_077086338.1|1319597_1320548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994671.1|1320544_1321615_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321687_1322326_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322620_1322848_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322970_1323684_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323928_1324879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302789.1|1324865_1325030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931009.1|1324982_1325264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325378_1326827_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_153302788.1|1326810_1326951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1326937_1327888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1418121	1470274	4110002	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418121_1419072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219858.1|1419058_1419226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419238_1419592_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419604_1419967_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420008_1420434_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420636_1421893_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422091_1423072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423221_1424463_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424561_1425512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425520_1426216_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429037_1429637_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429647_1431813_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431836_1433621_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433620_1433710_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434404_1434677_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434676_1436743_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436739_1437690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437788_1438739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438854_1439187_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439183_1439870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439856_1440816_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440857_1443218_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443217_1443850_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814028.1|1443912_1445292_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445338_1446694_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814025.1|1446972_1447221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447408_1447726_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447998_1448514_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448607_1448769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448784_1449540_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449878_1450085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450092_1450752_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451046_1453251_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453361_1454585_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454707_1455682_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455749_1456943_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456957_1457758_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457754_1459611_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459607_1460213_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460231_1461617_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462342_1463569_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463657_1464440_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464538_1465489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465515_1466289_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466300_1467542_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1469323_1470274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1517005	1583334	4110002	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1517005_1517956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517962_1519075_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1519761_1520964_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1521167_1523828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1523840_1527245_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_023995689.1|1527912_1530138_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1530184_1530511_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1530561_1531170_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_023852714.1|1531268_1532219_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532288_1533053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1533049_1533649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1533752_1534598_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534663_1535290_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535286_1536237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1536223_1536412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1536335_1537457_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537437_1538439_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538544_1540056_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540052_1541357_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541468_1542029_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542296_1542851_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543306_1543522_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543776_1546374_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546370_1547558_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1548216_1548831_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1548919_1550047_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550058_1550964_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1551714_1551870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1551856_1552807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552988_1553741_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553809_1554469_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554465_1555194_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555206_1557486_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557510_1557714_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1557755_1558403_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1558523_1559441_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559437_1560151_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560388_1561159_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561163_1561763_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562007_1563498_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563556_1563841_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1563837_1563966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1563978_1564134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1564406_1565333_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565469_1566210_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566376_1567753_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567934_1568840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570491_1572294_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1572411_1573062_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573160_1574111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574132_1575353_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575538_1576951_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1577014_1578082_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1578078_1579569_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579578_1580523_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580682_1581381_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581458_1582364_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582383_1583334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1619283	1674874	4110002	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1619283_1620234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620292_1621066_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621058_1622615_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622611_1623562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1623548_1623704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1624888_1625491_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625730_1626432_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626425_1627208_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627392_1628343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1628329_1628491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1628441_1629179_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629368_1630127_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630173_1631163_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631340_1632309_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633848_1634817_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634825_1635767_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636240_1637251_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637241_1638756_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638752_1640099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1640101_1641136_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641185_1642811_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643363_1644314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644418_1645366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645419_1647234_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647226_1647901_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648030_1651105_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651118_1651418_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651732_1652356_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1652599_1653469_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653446_1654391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1654476_1655448_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1655515_1656289_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656285_1657482_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657512_1658463_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658684_1659374_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659438_1660194_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660245_1661238_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661247_1662201_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662316_1663279_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664680_1665109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665105_1666056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1666349_1667072_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667510_1668698_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1668701_1669082_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670801_1671773_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671786_1672500_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672504_1673422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673528_1673825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1673923_1674874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1834725	1903101	4110002	transposase,tRNA,protease	Klosneuvirus(22.22%)	59	NA	NA
WP_010929577.1|1834725_1835676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836949_1838167_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839223_1840126_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840202_1841075_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841205_1841574_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841631_1842678_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842873_1844130_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844134_1845472_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845621_1846578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846680_1847613_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847728_1848049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1848050_1848401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848448_1850023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1850075_1851020_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1851037_1851868_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1851860_1853495_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853491_1854847_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1855753_1857331_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857334_1858609_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858706_1859081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860796_1861930_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861967_1862573_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862569_1863388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863459_1866084_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1866070_1866325_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866391_1866973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867276_1867537_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867702_1868326_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_065521066.1|1868325_1869099_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1869095_1870304_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870329_1870803_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870876_1871827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871925_1873275_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874040_1874796_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874888_1877771_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878093_1878519_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878546_1879695_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879691_1880198_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880204_1881500_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1881540_1882845_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882846_1883485_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883487_1884648_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884674_1886030_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886033_1887104_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887242_1887479_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887566_1888673_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888638_1889943_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889961_1890861_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1891044_1892202_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930785.1|1892266_1893574_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1893687_1894227_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1894504_1894717_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1894736_1896767_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1896792_1896987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|1897566_1899735_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_003816708.1|1900144_1900444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1900728_1901142_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1901101_1902052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902150_1903101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1914305	1963701	4110002	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1914305_1915256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915252_1916527_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1916624_1917824_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917820_1918474_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918470_1919907_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919894_1920254_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1921226_1922177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923222_1925088_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925345_1926866_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926953_1927604_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928552_1929848_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929869_1930754_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930852_1931728_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931717_1932074_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|1932147_1933179_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933308_1933488_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933585_1934110_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934120_1934957_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935069_1935441_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935437_1935989_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936004_1937696_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937744_1938425_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938672_1939137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939306_1940236_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940248_1940896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940969_1942787_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942870_1943821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|1944325_1944487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1944473_1945424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1945442_1945790_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1945818_1947258_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1947276_1947672_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1947846_1948455_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1948467_1949286_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1949237_1950212_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1950240_1951302_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1951298_1953515_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1953528_1953987_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1954144_1954489_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1954645_1955551_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1955637_1956651_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1958630_1959647_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1959789_1961142_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1961316_1961613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1962750_1963701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	1975197	2039566	4110002	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|1975197_1976148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|1976134_1976326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|1976369_1977320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977418_1978384_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978521_1979421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982015_1983503_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983513_1984710_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984782_1986102_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986098_1986974_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|1987004_1988174_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988170_1988485_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988506_1989229_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989228_1990047_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990051_1990579_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|1990584_1991850_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992199_1993339_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993416_1994289_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995159_1996110_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996069_1996705_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997064_1998387_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|1998615_1999527_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2000951_2001524_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001563_2003393_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003355_2004414_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004451_2004913_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004997_2005744_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007234_2010465_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010531_2011863_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012115_2012490_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012592_2013771_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013781_2014372_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014482_2015289_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2015314_2016109_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017109_2018084_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018242_2018755_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018911_2019883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021627_2022434_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2022430_2023567_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023682_2024447_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024560_2025331_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2025415_2026627_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026675_2027050_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027150_2028413_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028409_2029267_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029439_2030441_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030892_2031843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033358_2034558_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034926_2035163_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035226_2035394_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035507_2037403_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037566_2038517_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038615_2039566_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	2171093	2220746	4110002	transposase,tRNA	Synechococcus_phage(14.29%)	45	NA	NA
WP_005012067.1|2171093_2172044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172142_2174137_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174196_2175162_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175151_2178013_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178015_2178522_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178626_2179835_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179836_2180775_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180936_2181410_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181406_2182357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879558.1|2182343_2182523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566334.1|2182467_2182908_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183036_2184266_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184304_2185126_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185179_2186331_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186422_2186911_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_010930534.1|2189437_2192011_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192081_2194655_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194920_2195121_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195152_2195314_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195371_2195710_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195858_2196809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274081.1|2196907_2197627_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_029443816.1|2197703_2198252_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198233_2200249_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200431_2201181_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201193_2202057_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202060_2203476_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203609_2204338_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204476_2204677_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204852_2205251_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205274_2206675_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206793_2207546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207834_2208512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208538_2209318_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209314_2210199_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_077274094.1|2210216_2210906_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_010930526.1|2210980_2211739_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211864_2212512_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212779_2213796_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213893_2214934_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215068_2216361_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217720_2218104_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218121_2218709_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218746_2219697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219795_2220746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	2480590	2538834	4110002	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2480590_2481541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2482020_2482677_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2482691_2484359_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2484361_2484991_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2485202_2486297_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2486441_2487254_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2487257_2488961_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2489011_2490142_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2490328_2491405_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2491486_2492137_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_023853504.1|2492151_2493585_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2493838_2494657_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2494653_2495358_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2496257_2497373_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2497406_2497781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2497803_2498961_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2498973_2499207_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2499841_2502811_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2502825_2503035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2503186_2503816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029443766.1|2503812_2505930_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|2505926_2506607_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2506603_2507164_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2507170_2508268_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_077274082.1|2508405_2509014_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2509010_2510303_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2510316_2510859_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2510868_2511705_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2511738_2512800_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2512841_2513894_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2513909_2514212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2514353_2515304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996304.1|2515290_2515449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2515482_2517177_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2517173_2518259_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2518306_2519206_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2519216_2519861_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2520882_2524125_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_010930365.1|2524135_2525233_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_003819864.1|2525495_2526479_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_076879624.1|2526577_2527528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2527626_2528577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2528586_2529276_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2529335_2529773_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2529818_2530712_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2530759_2531932_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2531928_2533083_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2533279_2533630_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2533619_2534054_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2534070_2535021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2535168_2535636_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2535616_2536774_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2536839_2537766_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2537883_2538834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	2581112	2645599	4110002	transposase	uncultured_Caudovirales_phage(40.0%)	53	NA	NA
WP_005012067.1|2581112_2582063_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2582432_2583005_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2583007_2584018_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2584010_2584511_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2584521_2584863_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2584874_2585666_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2585682_2585952_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2585974_2586763_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2586809_2587826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2588042_2589485_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2589663_2591283_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2591403_2593224_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2593302_2594835_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2594868_2596515_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2596584_2597607_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2597624_2598758_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2598760_2599450_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2599449_2600235_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2600278_2601043_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2601081_2602503_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2602568_2603273_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2603320_2603740_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2603752_2604160_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2604343_2605054_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2605180_2605471_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2605488_2605971_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2610476_2611631_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2611936_2612953_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2613199_2613988_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2614054_2614735_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2614731_2615502_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2615600_2616551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2616606_2617524_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2617534_2618713_-	mandelate racemase	NA	NA	NA	NA	NA
WP_010930318.1|2618732_2619728_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2621316_2621925_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2621912_2622953_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2622970_2623933_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2623929_2625123_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2625119_2625917_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2625942_2626929_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2626947_2628987_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2629188_2629869_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2629882_2630794_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2630790_2631369_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2631507_2632413_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2632420_2635840_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2635827_2638428_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2639383_2640016_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2640409_2641168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2641164_2642367_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2642554_2643505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2644648_2645599_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	2673714	2712175	4110002	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2673714_2674665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2674763_2675714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2675812_2676763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2676855_2677395_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2677501_2677846_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2677903_2679352_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2679539_2679875_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2681502_2682681_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2682763_2683264_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_077274085.1|2683289_2684075_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2684086_2684551_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003811307.1|2684547_2684841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2684837_2685614_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2685642_2686470_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2686595_2687066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2687192_2688086_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2688133_2689315_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2689327_2690143_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2690276_2690804_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2690800_2691298_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2691445_2691823_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2692044_2692995_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2693093_2693705_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2693939_2695067_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2695177_2696266_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2696318_2697170_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2697189_2698071_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2698247_2699561_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2699771_2700605_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2700601_2701183_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_124740682.1|2701307_2701550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2701536_2702487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2702502_2703618_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2703720_2704647_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2704646_2705885_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2705881_2706649_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2706649_2707351_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2707432_2707879_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2708768_2709407_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2710175_2711126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2711224_2712175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	2811302	2865819	4110002	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	49	NA	NA
WP_023853639.1|2811302_2812253_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_086936807.1|2812239_2812434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931071.1|2812581_2813187_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2813240_2814554_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2814628_2815099_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2815098_2815887_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2815897_2817550_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2817637_2818588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2819749_2820256_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2820252_2821017_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2821032_2821317_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2821381_2822371_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2822542_2823472_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2823443_2824130_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2824163_2824709_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2824753_2826019_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2826015_2826918_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2828099_2829044_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2829138_2830656_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2830697_2832326_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2832433_2833315_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2836427_2836802_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2836826_2837165_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2837208_2838843_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2838881_2840228_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2840335_2841757_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2841826_2842411_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2842513_2843464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843598_2844705_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844715_2845813_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845957_2847163_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2847169_2847691_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2847687_2848179_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2848175_2848427_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2848407_2848893_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2849028_2852490_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2852486_2853392_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2853401_2853833_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2854079_2854583_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2854594_2856061_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2856135_2857011_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2857007_2858015_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858482_2858788_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858878_2859469_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859659_2860676_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860867_2863204_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2863286_2863721_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2863819_2864770_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864868_2865819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	2873844	2930630	4110002	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2873844_2874795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2876501_2876768_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2877475_2877814_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2882367_2882970_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2883066_2884356_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2884413_2885145_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2885141_2885945_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2885941_2887030_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2887026_2887956_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2888104_2889250_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2889271_2890222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2890552_2894374_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894530_2895199_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2895203_2896877_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896895_2898215_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2898219_2900571_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2900590_2902759_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2902755_2907945_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2908034_2908349_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908576_2908822_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908916_2909435_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909534_2910740_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910855_2912253_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2912369_2912948_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2913020_2914412_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914579_2915530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915810_2916431_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2916427_2916841_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916837_2917881_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917936_2918125_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2918134_2918899_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918989_2919646_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919737_2920496_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920521_2922123_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2922323_2923328_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2923428_2923692_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923809_2924586_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2925176_2926127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928510_2929623_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929679_2930630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	2961016	3004707	4110002	transposase	Planktothrix_phage(33.33%)	42	NA	NA
WP_005012067.1|2961016_2961967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2961953_2962199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2962087_2962984_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2965261_2967487_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967651_2968740_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968696_2969350_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2969397_2970195_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970726_2971677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2971757_2972906_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972962_2973913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2973899_2974118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2974011_2974317_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2974345_2974780_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974781_2976026_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2976022_2976733_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976747_2977659_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2978021_2978426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2978422_2978881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2978887_2979796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2979792_2980659_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980645_2981473_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981483_2982611_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983688_2984927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984968_2986231_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2986237_2986990_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2987041_2987227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987502_2987967_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987998_2988658_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988802_2990911_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990907_2991858_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991961_2992582_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2992685_2993426_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994560_2995685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995730_2996099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996340_2997291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2998326_2998869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2999061_2999268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2999254_3000205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3000201_3001167_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3001236_3002073_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|3002549_3003695_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003756_3004707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	3384653	3438394	4110002	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|3384653_3385604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386008_3386653_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386677_3387262_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387362_3387980_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387982_3389698_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389694_3390003_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3390019_3390655_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390681_3390984_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391084_3391939_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392126_3392351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392520_3392793_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393210_3393618_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393987_3394782_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394882_3396118_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396186_3397203_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3397199_3398591_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398587_3399784_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399780_3401319_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401315_3402575_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404515_3405466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3405452_3405629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3406232_3407327_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407319_3408654_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408607_3409291_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3409316_3410480_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3410476_3411478_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411477_3412350_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412346_3413096_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413092_3413884_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413880_3415020_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3415328_3416081_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416114_3416897_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416900_3417290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3418429_3419293_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3419328_3420417_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3420413_3421364_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3421350_3421764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3421717_3424696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425622_3426501_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3428449_3429400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429396_3429864_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429906_3430677_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430697_3431498_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431508_3432918_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433012_3433798_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434037_3435054_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435161_3435554_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435691_3436372_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3436376_3437375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3437443_3438394_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	3444549	3503847	4110002	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3444549_3446313_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3446424_3447303_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447415_3448231_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448234_3448486_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448570_3449587_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449917_3450139_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452499_3453417_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453914_3455123_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455202_3456774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456891_3457827_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458015_3458960_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3459028_3459244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3459527_3465245_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465250_3466378_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3466433_3467060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467331_3468348_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3468443_3469154_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469150_3470140_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3470271_3471867_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471869_3472607_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472762_3473635_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3473903_3475124_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475120_3475780_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475851_3476484_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476513_3477032_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477042_3478152_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478198_3479053_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479054_3479957_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481179_3482130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483884_3484874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485049_3485838_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485834_3486866_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486884_3487448_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487503_3489024_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489287_3489992_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3489999_3490737_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490842_3491217_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491259_3492549_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492545_3493715_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493711_3494551_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494610_3495546_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495558_3496509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496607_3497570_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497601_3497961_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498085_3498988_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498989_3500762_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500796_3501573_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502896_3503847_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	3518785	3576858	4110002	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518785_3519736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519864_3520998_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521041_3521947_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521949_3523650_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523646_3524567_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524574_3525552_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525610_3526645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528619_3528856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3528982_3529846_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529934_3530756_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530835_3531573_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3531569_3532562_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3532675_3533338_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533382_3534531_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536854_3537805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538145_3539096_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539194_3540145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3540441_3540939_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540981_3542757_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3542803_3543631_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543637_3544372_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545541_3546336_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546625_3547216_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547249_3548578_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548652_3549798_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549909_3550908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550870_3551305_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552821_3553706_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553702_3554908_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554904_3555765_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555877_3557668_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3557708_3558374_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3558374_3558683_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558848_3560135_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3561568_3562519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564470_3565685_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565790_3566780_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566776_3567385_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567397_3568027_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568023_3568644_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568675_3569467_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3570309_3570774_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3570792_3571719_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571772_3573059_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573989_3574862_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574858_3575809_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575907_3576858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP015760	Bordetella pertussis strain VA-175, complete genome	4110002	4009070	4073982	4110002	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009070_4009556_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009644_4009782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009774_4010755_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011021_4011831_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011870_4012551_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012544_4013003_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013014_4013377_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013459_4014143_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014198_4014507_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014525_4014840_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014836_4017311_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017318_4018710_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018706_4018892_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018870_4019572_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019568_4020390_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020370_4021495_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021487_4022507_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4022712_4023747_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023847_4024639_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024721_4025096_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025073_4026483_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026475_4027858_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028192_4029797_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4029832_4030846_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030856_4031783_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032173_4033124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033293_4034520_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034719_4035586_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035578_4036541_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036641_4037592_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037690_4038641_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038739_4039690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039686_4041180_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041176_4044284_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044280_4047349_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047345_4048596_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4048776_4049538_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4049570_4050221_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4050223_4051063_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051303_4052047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052129_4052477_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052574_4053417_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053461_4054349_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054375_4054564_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054661_4056119_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056105_4057632_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057650_4058118_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058117_4059140_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059260_4060001_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060055_4061156_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061157_4062348_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062467_4063484_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063802_4064474_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064470_4065379_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065590_4066238_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4070089_4071166_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071176_4071986_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4072075_4072849_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4072868_4073045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073031_4073982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
