The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	120284	189934	4120993	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|120284_122942_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|123019_124222_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|124218_124731_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810262.1|124853_125192_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|125567_126518_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|126616_127567_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|127730_129626_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|129738_129906_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|129969_130206_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|130574_131774_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|133289_134240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|134691_135693_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|135865_136723_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|136719_137982_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|138082_138457_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|138505_139717_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|139801_140572_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|140685_141450_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|141565_142702_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|142698_143505_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|145249_146221_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|146377_146890_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|147048_148023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|149023_149818_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|149843_150650_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|150760_151351_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|151361_152540_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|152642_153017_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|153269_154601_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|154667_157898_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|159388_160135_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|160219_160681_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|160718_161777_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|161739_163569_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|163608_164181_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|165605_166517_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|166745_168068_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930730.1|169021_169972_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|170842_171715_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|171792_172932_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|173281_174547_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|174552_175080_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|175084_175903_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|175902_176625_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|176646_176961_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|176957_178127_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|178157_179033_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|179029_180349_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|180421_181618_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|181628_183116_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|185710_186610_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|186747_187713_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|187811_188762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|188805_188997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|188983_189934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	205483	251871	4120993	transposase	uncultured_Mediterranean_phage(20.0%)	42	NA	NA
WP_010930153.1|205483_206500_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|208479_209493_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|209579_210485_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|210641_210986_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|211143_211602_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|211615_213832_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|213828_214890_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|214918_215893_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|215844_216663_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|216675_217284_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|217458_217854_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|217872_219312_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|219340_219688_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|219706_220657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|220643_220805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|221309_222260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|222343_224161_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|224234_224882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|224894_225824_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|225993_226458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|226705_227386_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|227434_229126_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|229141_229693_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|229689_230061_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|230173_231010_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|231020_231545_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|231642_231822_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|231951_232983_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|233056_233413_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|233402_234278_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|234376_235261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|235282_236578_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|237526_238177_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|238264_239785_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|242950_243901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|243999_244950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|245922_246282_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|246269_247706_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|247702_248356_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|248352_249552_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|249649_250924_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|250920_251871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	263075	303764	4120993	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|263075_264026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|264124_265075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|265034_265448_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|265732_266032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|266439_268608_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_124740709.1|269187_269382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|269407_271438_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|271457_271670_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|271947_272487_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|272600_273908_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|273972_275130_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|275313_276213_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|276231_277536_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|277501_278608_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|278695_278932_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|279070_280141_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|280144_281500_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|281526_282687_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|282689_283328_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|283329_284634_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|284674_285970_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|285976_286483_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|286479_287628_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|287655_288081_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|288403_291286_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|291378_292134_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|292899_294249_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|294347_295298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|295396_296347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|296420_296894_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|296919_298128_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|298124_298898_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|298897_299521_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|299686_299947_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|300250_300832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|300898_301153_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|301139_303764_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 4
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	331544	397092	4120993	protease,transposase,tRNA	Lake_Baikal_phage(21.43%)	58	NA	NA
WP_010929577.1|331544_332495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|332481_332640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|332695_333505_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|333629_334580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|334576_335470_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|335594_335789_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|335788_336130_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|336139_338002_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|338131_338644_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|338646_338970_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_010930570.1|339418_340630_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|340647_341160_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|341375_341867_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|342119_344156_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|344233_345436_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|345486_346215_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_005012067.1|347772_348723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|349293_349506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|349523_350255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|350289_350931_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|350923_351640_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|353804_354581_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|354602_355760_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|355756_356188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|356184_356988_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|357001_357457_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|357469_358441_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|358506_359730_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|359957_360908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|361031_363485_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|363673_364978_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|365082_365736_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|365738_367049_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|367227_367806_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|367917_368118_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|368463_369030_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|369113_369317_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|369623_369944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|369985_370267_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|370341_371598_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|371980_372310_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|373880_374702_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|374701_375841_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|375847_376744_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|376740_378666_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|379025_381638_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|381690_383991_-	AAA family ATPase	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|383987_385196_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|385457_385832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|385828_386779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|386877_388872_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|388931_389897_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|389886_392748_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|392750_393257_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|393361_394570_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|394571_395510_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|395671_396145_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|396141_397092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	712735	774083	4120993	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|712735_713686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|713802_714522_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|714694_715681_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|715681_716164_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|716167_717451_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|717447_718386_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|718382_720092_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|720101_721349_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|722959_724249_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|725386_726160_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|726821_727565_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|727639_728380_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|728575_729412_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|729462_730233_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|730282_731335_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|731331_731958_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|731954_733001_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|733167_734184_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|734282_735233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|737973_739263_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|739381_739852_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|739862_741071_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|741217_741682_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|741705_742656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|743640_744414_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|744410_745409_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|745493_746270_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|746425_748093_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|748410_749535_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|749661_750285_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|750281_752183_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|752231_753026_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|753038_754040_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|754036_754543_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|754535_755384_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|755481_756024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|756067_757018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|757173_757500_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|757496_757781_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|757777_758257_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|758253_759882_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|759878_760223_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|760222_763156_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|764314_765265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|765363_765660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|765766_766684_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|766688_767402_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|767415_768387_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|770106_770487_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|770490_771678_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|772116_772839_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|773132_774083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	794874	866028	4120993	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|794874_795825_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|796377_798003_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|798052_799087_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|799089_800436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|800432_801947_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|801937_802948_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|803421_804363_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|804371_805340_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|806879_807848_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|808025_809015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|809061_809820_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|810009_810747_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|810697_810859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|810845_811796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|811980_812763_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|812756_813458_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|813697_814300_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|815484_815640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|815626_816577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|816573_818130_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|818122_818896_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|818954_819905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|819986_821162_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|821175_823233_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|823229_824255_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|824266_825556_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|825578_826676_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|826672_827563_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|827559_829644_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|829675_830845_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|830886_831627_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|831626_832397_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930465.1|833252_834038_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|834064_836149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|836316_838272_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|838595_839096_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|839194_840721_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|840858_841746_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|841760_842714_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|842765_844856_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|844871_845258_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|847951_848755_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|850048_850951_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|851015_851792_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|852113_853163_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|853286_854957_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|854961_855756_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|855854_856805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|856824_857730_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|857807_858506_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|858665_859610_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|859619_861110_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|861106_862174_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|862237_863650_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|863835_865056_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|865077_866028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	950225	1019580	4120993	transposase,tRNA	Planktothrix_phage(33.33%)	60	NA	NA
WP_005012067.1|950225_951176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|951274_952045_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|952041_952713_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|952709_953351_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|953363_954284_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|954444_955605_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|955646_956597_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|957195_957420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|957584_959279_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|959400_959670_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|959785_960184_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|960194_961151_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|961287_961833_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|961853_963803_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|964190_964967_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|964972_965365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|965786_966737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|966733_967831_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|967862_968813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|970594_971836_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|971847_972621_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|972647_973598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|974077_974734_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|974748_976416_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|976418_977048_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930384.1|978497_979310_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|979313_981017_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|981067_982198_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|982384_983461_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|983542_984193_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_023853504.1|984207_985641_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|985894_986713_-	tungsten ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|986709_987414_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|988313_989429_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|989462_989837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812666.1|991028_991262_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|991895_994865_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|994879_995089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|995240_995870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029443766.1|995866_997984_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_010930372.1|997980_998661_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|998657_999218_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|999224_1000322_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_077274082.1|1000458_1001067_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|1001063_1002356_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|1002369_1002912_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|1002921_1003758_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|1003791_1004853_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|1004894_1005947_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|1005962_1006265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1006406_1007357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996304.1|1007343_1007502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065454012.1|1007522_1009229_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|1009225_1010311_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|1010358_1011258_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|1011268_1011913_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|1012934_1016177_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_010930365.1|1016187_1017285_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_003819864.1|1017547_1018531_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_076879624.1|1018629_1019580_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	1073165	1139664	4120993	transposase	uncultured_Caudovirales_phage(40.0%)	55	NA	NA
WP_005012067.1|1073165_1074116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|1074485_1075058_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|1075060_1076071_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|1076063_1076564_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|1076574_1076916_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|1076927_1077719_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|1077735_1078005_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|1078027_1078816_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|1078862_1079879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|1080095_1081538_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|1081716_1083336_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|1083456_1085277_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|1085355_1086888_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|1086921_1088568_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|1088637_1089660_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|1089677_1090811_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|1090813_1091503_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|1091502_1092288_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|1092331_1093096_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|1093134_1094556_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|1094621_1095326_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|1095373_1095793_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|1095805_1096213_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|1096396_1097107_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|1097233_1097524_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|1097541_1098024_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|1102529_1103684_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|1103989_1105006_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|1105252_1106041_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|1106107_1106788_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|1106784_1107555_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|1107653_1108604_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|1108659_1109577_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|1109587_1110766_-	mandelate racemase	NA	NA	NA	NA	NA
WP_010930318.1|1110785_1111781_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|1113369_1113978_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|1113965_1115006_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|1115023_1115986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|1115982_1117176_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|1117172_1117970_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|1117995_1118982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|1119000_1121040_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|1121241_1121922_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|1121935_1122847_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|1122843_1123422_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|1123560_1124466_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1127879_1130480_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|1131435_1132068_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|1132461_1133220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|1133216_1134419_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|1134606_1135557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|1136464_1137610_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|1137629_1138352_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|1138468_1138648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1138713_1139664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	1302226	1367810	4120993	transposase,tRNA	Oenococcus_phage(33.33%)	53	NA	NA
WP_023853639.1|1302226_1303177_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1303275_1304226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|1304428_1305418_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|1305501_1305855_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|1305932_1306541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|1308214_1308793_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|1308817_1309771_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|1309810_1310728_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|1310849_1311776_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|1311783_1312530_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|1312856_1313798_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_003811651.1|1313873_1313996_-	membrane protein	NA	NA	NA	NA	NA
WP_010930224.1|1314024_1315722_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|1316156_1317578_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|1317731_1318511_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930221.1|1318635_1319508_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|1319619_1320744_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|1320789_1321752_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|1321744_1322599_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|1322706_1323117_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|1323113_1324064_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|1324162_1325044_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|1325121_1326501_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|1326539_1327385_-	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1327400_1327745_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|1327747_1328284_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|1328456_1329032_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|1329134_1329872_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|1329939_1331577_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|1331684_1332440_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|1332427_1333390_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|1333491_1334292_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|1334353_1336429_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|1336593_1338969_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|1339049_1340405_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|1341883_1342606_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|1342660_1343644_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1343773_1344724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|1344720_1345623_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|1345710_1346469_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248962.1|1346481_1347630_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|1347670_1349098_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|1349327_1350542_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|1350587_1353458_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|1355868_1356357_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|1356482_1359179_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|1359333_1361616_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|1361780_1362413_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|1362511_1363462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|1363508_1364063_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|1364130_1364976_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|1365045_1366014_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|1366013_1367810_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	1385379	1445273	4120993	holin,transposase,tRNA	Catovirus(22.22%)	50	NA	NA
WP_010930190.1|1385379_1386900_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|1386942_1387245_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|1387241_1387874_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|1387952_1389818_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_010930187.1|1389814_1390630_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930186.1|1390637_1391753_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|1392657_1393536_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|1393535_1394360_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|1394527_1395478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879621.1|1395660_1398540_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003812697.1|1398521_1399298_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|1399390_1400854_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|1400850_1401222_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1401239_1402553_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|1402589_1403048_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1403160_1404111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|1404107_1405121_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|1405260_1406247_+	homoserine kinase	NA	NA	NA	NA	NA
WP_010930177.1|1406290_1407091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1407893_1408844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995509.1|1408830_1408992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809618.1|1408995_1409598_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|1409616_1410249_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930174.1|1410486_1412373_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|1412391_1413234_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|1413230_1414589_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|1414809_1415604_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|1415834_1417328_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|1417563_1419645_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|1419839_1420880_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|1421014_1422031_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|1422052_1422910_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|1422954_1423731_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|1424098_1425049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|1425075_1425540_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|1426746_1429035_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|1429151_1430024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|1430066_1431221_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|1431255_1432086_-	transglycosylase	NA	NA	NA	NA	NA
WP_023853525.1|1432169_1433714_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|1433756_1434116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|1434117_1434531_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|1434571_1434889_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|1434973_1435690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|1435953_1437375_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|1437441_1440189_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|1440521_1441538_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|1441873_1442515_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|1442605_1444042_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|1444199_1445273_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 11
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	1450157	1585316	4120993	transposase,tRNA	uncultured_Caudovirales_phage(10.53%)	118	NA	NA
WP_010931363.1|1450157_1451174_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|1452111_1453539_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|1453535_1454558_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|1454547_1455021_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_023995116.1|1455146_1456049_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|1456045_1457689_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|1457685_1458693_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1459523_1460540_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|1460639_1461272_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|1461280_1461670_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|1461722_1462775_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|1463638_1465345_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|1465418_1465919_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|1465933_1467991_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|1468017_1468311_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|1468412_1469360_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|1469372_1470248_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|1470368_1470929_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|1470963_1471287_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|1471722_1472460_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|1472758_1473709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|1473952_1474216_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|1474289_1474571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1474587_1475448_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|1475444_1475780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|1475833_1476484_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|1478164_1479109_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|1479154_1479472_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|1479474_1480413_-	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|1480590_1481076_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|1481094_1481643_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|1481674_1481827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|1481919_1483053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443834.1|1483090_1483798_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|1483952_1486301_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|1486297_1487236_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|1487261_1488452_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1488448_1489222_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|1489251_1490445_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|1490562_1491573_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|1491590_1493627_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|1493821_1494562_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|1494660_1495611_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|1495653_1496829_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|1497050_1498841_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|1498853_1500515_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|1500527_1503233_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|1503525_1505280_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|1505276_1505903_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|1505899_1506751_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|1506826_1508941_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_023853098.1|1509091_1509742_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|1509887_1510139_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|1510208_1511591_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|1511587_1514767_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|1515574_1516492_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|1516543_1517275_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|1517334_1517907_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|1519415_1520432_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1520569_1521619_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|1521723_1522674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|1522769_1523495_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|1523705_1524086_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|1524391_1525264_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|1525271_1525652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|1525805_1527080_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|1528567_1529476_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|1530273_1531338_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|1533174_1534209_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|1534397_1535039_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|1535121_1536948_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|1537191_1538121_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|1538120_1538870_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|1538941_1539856_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|1539875_1541021_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|1541081_1541993_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_076879566.1|1542073_1543024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|1543122_1543707_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|1543741_1544731_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|1544727_1545669_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|1545665_1546886_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|1546928_1547243_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|1547434_1547794_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_003821510.1|1547795_1549526_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|1549698_1550370_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|1550384_1551713_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|1551709_1552609_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|1552695_1553781_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|1553773_1554907_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930094.1|1557959_1558541_+	OmpA family protein	NA	NA	NA	NA	NA
WP_077274086.1|1558618_1559392_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930092.1|1559388_1560066_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|1560281_1561463_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|1562235_1562418_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|1562447_1563398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740670.1|1563384_1563639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566317.1|1563527_1563920_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|1564196_1565108_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|1565232_1566207_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1566203_1567154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|1567252_1568338_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|1568435_1568846_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|1569461_1571375_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|1571510_1574123_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|1574124_1574859_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|1575022_1576204_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|1576200_1576413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|1576409_1577390_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|1577435_1578263_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930067.1|1578409_1580227_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|1580281_1580665_+	ferredoxin	NA	NA	NA	NA	NA
WP_010930066.1|1580661_1581612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|1581724_1581976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|1582169_1582385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|1582481_1583600_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|1583719_1583932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|1584091_1584313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1584365_1585316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	1698633	1767636	4120993	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|1698633_1699584_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|1699580_1700600_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|1700609_1703318_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|1703465_1704122_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_154219863.1|1704081_1704234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1704220_1705171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930014.1|1705276_1706212_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|1706411_1708106_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|1708140_1709067_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|1709135_1710233_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|1710251_1711115_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|1711126_1711909_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|1711905_1713024_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|1713020_1714553_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|1714593_1715601_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|1715745_1716468_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|1716483_1717506_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|1717822_1718557_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|1718641_1720387_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|1720383_1721136_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|1721180_1722137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|1722225_1722792_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|1722799_1723660_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_010930001.1|1723689_1724433_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
WP_003807497.1|1724449_1725133_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|1725970_1726885_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|1726949_1727858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|1727948_1729373_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|1729374_1730697_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|1730693_1732832_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|1732909_1738030_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|1738130_1738439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|1738508_1739066_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|1739081_1740563_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|1740617_1742471_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|1742733_1744071_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|1744105_1746103_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|1746120_1748169_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|1748299_1749166_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|1749434_1750400_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|1750514_1751663_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|1752087_1752399_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|1752432_1752693_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|1752842_1753976_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|1754046_1755183_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|1755348_1756143_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|1756205_1756649_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|1756764_1757715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068980.1|1757701_1757890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020699729.1|1757837_1758245_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|1758317_1760513_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1760734_1761685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|1761644_1762169_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|1762300_1763272_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|1763391_1765836_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|1765851_1766442_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1766685_1767636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	1783081	1883192	4120993	terminase,protease,transposase,tRNA	uncultured_Caudovirales_phage(10.71%)	109	NA	NA
WP_005012067.1|1783081_1784032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|1784763_1785141_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|1785125_1785827_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|1785970_1786663_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|1786662_1787766_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|1787875_1790248_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|1790244_1791804_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|1791828_1792626_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|1792657_1793803_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|1793907_1795350_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003814416.1|1795352_1796441_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|1798719_1799670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879618.1|1799656_1799875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|1800799_1801357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|1801332_1801683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|1801851_1802646_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|1802642_1803692_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|1803691_1804381_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|1804467_1804965_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|1804996_1806313_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814643.1|1807339_1807798_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|1807797_1808478_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|1808480_1808909_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|1808961_1810692_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|1810757_1811330_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|1811310_1811997_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|1812352_1813024_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010926433.1|1813573_1813855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879540.1|1813851_1814385_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|1814366_1814918_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|1814896_1815139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|1815143_1815956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|1815955_1816219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|1816259_1816457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|1816437_1816854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|1816858_1820815_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|1820807_1821197_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|1821193_1821727_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|1821794_1822154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931434.1|1824800_1825091_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|1825108_1825438_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|1825447_1825966_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|1826220_1826721_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|1826728_1827151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931438.1|1827147_1827546_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|1827542_1827938_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|1827937_1828138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|1828139_1828622_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|1828684_1828936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853024.1|1828945_1829593_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_005012808.1|1829610_1830561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|1830989_1831592_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|1831714_1831957_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|1831962_1833018_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|1833046_1834465_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|1834467_1835745_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931448.1|1835731_1836181_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_005012067.1|1836856_1837807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|1837824_1838046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|1838060_1838759_+	membrane protein	NA	NA	NA	NA	NA
WP_010931450.1|1838751_1839072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|1839551_1840163_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931452.1|1840228_1840441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1840692_1841643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|1841741_1842815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|1842982_1843777_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|1843816_1844341_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|1844333_1846076_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|1846285_1847044_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|1847046_1847754_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|1847770_1848652_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|1848662_1849421_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|1849389_1850145_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|1850214_1851633_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|1851654_1852305_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|1852438_1852774_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_023995786.1|1852714_1852876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1852862_1853813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|1853889_1855710_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|1855714_1856788_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|1856910_1857879_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|1857952_1858864_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|1858882_1859455_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|1859535_1860084_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|1860083_1861673_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|1861742_1861982_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003814219.1|1862022_1863054_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|1863113_1864295_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|1864391_1864844_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|1864853_1866194_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|1866510_1867548_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|1867929_1868289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|1868372_1869314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|1869388_1870339_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|1870632_1871727_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|1871808_1872690_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|1872711_1873551_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|1873626_1875144_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|1875240_1876341_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|1876357_1876780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814195.1|1876802_1877015_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|1877061_1877982_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814191.1|1878245_1878914_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|1878916_1879246_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|1879452_1880886_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|1880897_1881281_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|1881342_1882143_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_154219861.1|1882090_1882255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|1882241_1883192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	2169805	2302731	4120993	transposase,tRNA,integrase	uncultured_Mediterranean_phage(10.34%)	120	2214448:2214465	2259088:2259105
WP_010929956.1|2169805_2170756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|2170752_2171388_-	transporter	NA	NA	NA	NA	NA
WP_003818466.1|2171517_2172417_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|2172512_2173004_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|2173050_2174016_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|2175149_2176391_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|2176504_2177521_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|2177555_2178032_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|2178174_2179083_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|2179196_2180309_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_003818475.1|2180409_2180943_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|2181031_2182282_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|2182383_2182896_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_076879639.1|2182801_2183008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2182994_2183945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|2184010_2184949_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|2184971_2185598_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|2185594_2186251_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|2186247_2186850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807309.1|2186856_2187483_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
WP_010929869.1|2187624_2188194_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|2188264_2189584_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|2189690_2189882_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|2190133_2191423_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|2191577_2192573_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|2192657_2193332_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2193328_2194279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068983.1|2194265_2194448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816336.1|2194440_2195682_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|2195678_2196623_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|2196741_2197692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|2197651_2198581_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|2198634_2198970_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|2199014_2199779_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|2199802_2200543_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248486.1|2200550_2202125_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
WP_010929862.1|2202138_2203116_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929861.1|2203388_2203988_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
WP_155120818.1|2204021_2210924_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|2211370_2211502_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_019248159.1|2211533_2211695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929858.1|2211767_2211974_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|2212978_2213638_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|2213665_2214811_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
2214448:2214465	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|2214951_2215287_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|2215361_2216222_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|2216485_2217187_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|2217356_2217752_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2217861_2218812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|2218822_2219464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|2219630_2219873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|2219971_2220922_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|2220957_2221425_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|2221658_2222036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|2222032_2222215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|2222218_2223205_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|2223201_2223849_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|2223906_2224434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929846.1|2224467_2225655_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_023853043.1|2225644_2226007_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
WP_010929844.1|2225999_2226119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926403.1|2226119_2226320_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|2226316_2227306_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|2228792_2230763_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|2231004_2231403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|2231411_2232335_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2232792_2233743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|2233973_2235665_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|2235713_2235986_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|2235982_2236354_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|2236449_2236584_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|2236989_2238399_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816023.1|2238395_2239511_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929838.1|2239605_2242059_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|2242177_2242969_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|2243088_2244516_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|2244554_2245526_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|2245944_2247108_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|2247195_2248041_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995443.1|2249470_2249611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2249597_2250548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|2251102_2251477_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|2251551_2252610_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|2252633_2253584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|2256465_2257635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|2257735_2259343_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
2259088:2259105	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|2259389_2261411_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|2261439_2261685_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|2261698_2262889_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|2263084_2264050_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|2264072_2265212_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|2265423_2266386_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|2266509_2268534_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|2268730_2270974_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|2271252_2271711_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|2272638_2275260_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|2275323_2277951_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|2278102_2279167_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815975.1|2279163_2279937_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|2279945_2280779_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|2280791_2281571_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|2281605_2283078_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|2283105_2283864_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|2283919_2285770_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|2285863_2286340_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|2286356_2287277_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|2287383_2287884_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|2288257_2288950_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_153302770.1|2289104_2289272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2289258_2290209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|2290205_2293979_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|2294315_2296205_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|2296216_2297110_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_003817654.1|2297135_2298011_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|2298007_2298859_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|2298920_2299601_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_023853185.1|2299604_2299964_+	outer membrane efflux domain protein	NA	NA	NA	NA	NA
WP_019247190.1|2299964_2300924_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|2300944_2301433_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|2301714_2302731_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	2469891	2534801	4120993	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|2469891_2470377_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|2470465_2470603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|2470595_2471576_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|2471842_2472652_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|2472691_2473372_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|2473365_2473824_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|2473835_2474198_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|2474280_2474964_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|2475019_2475328_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|2475346_2475661_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|2475657_2478132_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|2478139_2479531_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|2479527_2479713_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|2479691_2480393_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|2480389_2481211_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|2481191_2482316_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|2482308_2483328_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|2483533_2484568_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|2484668_2485460_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|2485542_2485917_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|2485894_2487304_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|2487296_2488679_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|2489013_2490618_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|2490653_2491667_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|2491677_2492604_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486111.1|2492994_2493945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|2494114_2495341_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|2495540_2496407_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|2496399_2497362_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|2497462_2498413_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2498511_2499462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2499560_2500511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_065454016.1|2500507_2502001_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|2501997_2505105_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|2505101_2508170_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|2508166_2509417_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|2509597_2510359_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|2510391_2511042_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|2511044_2511884_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|2512124_2512868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|2512950_2513298_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|2513395_2514238_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|2514282_2515170_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|2515196_2515385_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|2515482_2516940_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|2516926_2518453_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|2518471_2518939_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|2518938_2519961_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|2520081_2520822_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|2520876_2521977_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|2521978_2523169_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|2523288_2524305_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|2524623_2525295_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010931672.1|2526409_2527057_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|2530908_2531985_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|2531995_2532805_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|2532894_2533668_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|2533687_2533864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|2533850_2534801_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	2570819	2640853	4120993	transposase,tRNA	Natrialba_phage(12.5%)	59	NA	NA
WP_010929569.1|2570819_2572739_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|2572735_2573428_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2573424_2574222_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|2574228_2574990_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|2575033_2575951_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|2577540_2578731_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|2578969_2579350_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|2579359_2579893_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|2579956_2580388_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|2580390_2581089_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|2581331_2581856_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|2581937_2582321_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|2582480_2586593_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|2586592_2590837_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|2590945_2591350_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|2591590_2592766_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|2595171_2596278_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|2597289_2598105_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|2598101_2599052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|2599133_2599469_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|2599493_2599928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|2599960_2601187_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|2601183_2601681_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|2601888_2602797_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|2602982_2603825_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|2603867_2605289_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|2605444_2606395_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|2606391_2607582_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|2607768_2608743_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_003814404.1|2610878_2611418_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|2611421_2612150_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|2612136_2613030_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|2613100_2613496_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|2613505_2614036_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|2614164_2614464_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|2614481_2615432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|2615930_2616566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|2616537_2616774_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|2616901_2617795_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|2618964_2620212_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|2620208_2620823_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|2620958_2621909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|2621951_2623208_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|2624439_2625174_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|2625179_2625770_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|2625794_2626484_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|2626480_2627242_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|2627321_2628221_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|2628314_2629265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|2630065_2631292_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|2631291_2631711_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|2631894_2632836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|2633259_2634096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|2634290_2634872_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|2634884_2635202_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|2635305_2636364_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|2636398_2637670_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|2638299_2639481_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|2639902_2640853_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	2648451	2706925	4120993	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|2648451_2649402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|2649476_2650421_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|2650417_2652292_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|2653639_2654344_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|2654340_2655447_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|2655708_2656302_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|2656298_2657486_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|2657548_2658808_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|2658831_2659920_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|2659927_2661028_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|2661031_2661607_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|2661610_2662663_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|2662793_2663801_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|2663802_2665089_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|2665105_2665261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|2665285_2666089_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|2666085_2666952_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|2667020_2668157_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|2668156_2668996_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|2669928_2670531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|2670560_2671214_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|2671346_2672603_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|2672605_2673550_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|2673625_2673901_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|2673908_2674571_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|2674632_2675634_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|2675648_2676197_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|2676254_2677151_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|2677147_2678209_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|2678244_2679195_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|2680094_2681288_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|2681369_2681999_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|2682060_2682744_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|2682753_2684436_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|2684723_2685071_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|2685161_2685479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|2685761_2686778_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|2686853_2687654_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|2687650_2688526_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|2688536_2689829_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|2689871_2690912_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|2691017_2691839_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|2691939_2692890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|2692988_2693894_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|2693890_2694724_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|2695560_2696571_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|2696567_2696957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929638.1|2697850_2699104_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|2699194_2700895_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|2701321_2701969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|2701967_2703407_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|2703499_2703802_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|2703829_2704708_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2705974_2706925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	2735709	2796220	4120993	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	52	NA	NA
WP_005015810.1|2735709_2736660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|2738103_2739006_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|2738983_2739613_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|2739943_2741326_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|2741359_2741989_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|2742037_2743645_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|2743669_2744353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|2744434_2744911_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|2744951_2745131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2745117_2746068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|2747183_2747711_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|2747802_2748618_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|2748678_2749413_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|2749450_2751529_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|2751778_2752051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|2752149_2753238_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|2753241_2755146_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|2755142_2758817_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|2758877_2759441_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|2759448_2759871_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|2759898_2760318_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|2760346_2760793_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|2760919_2761417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|2761571_2763842_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|2763890_2765123_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|2765221_2766172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|2766217_2766910_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|2766906_2767800_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|2768194_2769295_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|2769376_2769751_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|2769810_2772675_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|2772819_2773560_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|2773629_2774841_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|2774869_2775838_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2776451_2777402_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|2777558_2777882_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|2777986_2779036_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|2779032_2779857_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|2779857_2780154_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|2780179_2780455_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|2780511_2781156_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|2781155_2781842_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|2781971_2782823_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|2782873_2783599_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|2783630_2784980_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|2785091_2786024_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|2786481_2789277_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|2789870_2792813_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|2792884_2793604_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|2793642_2794191_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|2794345_2795245_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|2795269_2796220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	2804152	2857736	4120993	protease,transposase,tRNA	Bacillus_phage(25.0%)	46	NA	NA
WP_005012067.1|2804152_2805103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2805189_2806140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|2806136_2807087_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|2807073_2807247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|2807185_2807983_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|2808932_2809343_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|2810364_2811108_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|2811151_2812195_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|2812365_2814468_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|2815878_2816835_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|2816853_2817345_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|2817341_2818697_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|2818697_2819396_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|2819392_2820094_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|2820346_2821396_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|2821501_2822443_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|2822439_2824329_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|2824415_2825054_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|2825196_2826582_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|2826512_2827049_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|2827200_2828592_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|2828608_2829589_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|2829724_2830708_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929710.1|2833537_2834662_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|2834675_2835656_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2836386_2837337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|2837896_2838442_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|2838525_2840145_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|2840160_2841315_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|2841328_2841454_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|2841450_2843202_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|2843198_2844878_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|2844913_2845489_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|2846631_2846910_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2847953_2848904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|2848890_2849106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|2849181_2849343_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|2849350_2849491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815819.1|2850467_2851079_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|2851237_2852092_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|2852111_2853494_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|2853558_2854200_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|2854339_2854798_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|2854822_2855599_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|2855652_2856789_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|2856785_2857736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	3126119	3185419	4120993	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|3126119_3127070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|3128393_3129170_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|3129204_3130977_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|3130978_3131881_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|3132005_3132365_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|3132396_3133359_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|3133457_3134408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|3134420_3135356_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|3135415_3136255_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|3136251_3137421_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|3137417_3138707_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|3138749_3139124_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|3139229_3139967_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|3139974_3140679_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|3140942_3142463_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|3142518_3143082_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|3143100_3144132_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|3144128_3144917_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|3145092_3146082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3147838_3148789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|3150011_3150914_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|3150915_3151770_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|3151816_3152926_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|3152936_3153455_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|3153484_3154117_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|3154188_3154848_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|3154844_3156065_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|3156333_3157206_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|3157361_3158099_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852728.1|3158101_3159697_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|3159828_3160818_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|3160814_3161525_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|3161620_3162637_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|3162908_3163535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|3163590_3164718_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|3164723_3170441_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814281.1|3170724_3170940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814277.1|3171008_3171953_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|3172141_3173077_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|3173194_3174766_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|3174845_3176054_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|3176551_3177469_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|3179829_3180051_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|3180381_3181398_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|3181482_3181734_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|3181737_3182553_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|3182665_3183544_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|3183655_3185419_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 22
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	3191574	3245315	4120993	transposase	Salmonella_phage(33.33%)	50	NA	NA
WP_010930179.1|3191574_3192525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931358.1|3192593_3193592_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|3193596_3194277_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|3194414_3194807_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|3194914_3195931_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|3196170_3196956_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|3197050_3198460_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3198470_3199271_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|3199291_3200062_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|3200104_3200572_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|3200568_3201519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|3203467_3204346_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|3205272_3208251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080501793.1|3208204_3208618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|3208604_3209555_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|3209551_3210640_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|3210675_3211539_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|3212678_3213068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|3213071_3213854_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_033446332.1|3213887_3214640_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|3214948_3216088_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|3216084_3216876_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|3216872_3217622_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|3217618_3218491_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|3218490_3219492_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|3219488_3220652_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|3220677_3221361_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|3221314_3222649_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|3222641_3223736_+	CoA transferase	NA	NA	NA	NA	NA
WP_153302791.1|3224339_3224516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3224502_3225453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|3227393_3228653_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|3228649_3230188_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|3230184_3231381_-	MFS transporter	NA	NA	NA	NA	NA
WP_029443830.1|3231377_3232769_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|3232765_3233782_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|3233850_3235086_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|3235186_3235981_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3236350_3236758_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|3237175_3237448_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|3237617_3237842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|3238029_3238884_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|3238984_3239287_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_015040527.1|3239313_3239949_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|3239965_3240274_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|3240270_3241986_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|3241988_3242606_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|3242706_3243291_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|3243315_3243960_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|3244364_3245315_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	3294202	3326012	4120993	transposase,protease,integrase,tRNA	Pseudomonas_phage(33.33%)	23	3291501:3291519	3311390:3311408
3291501:3291519	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_029443720.1|3294202_3294850_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|3294846_3295629_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|3295701_3296793_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|3297072_3298200_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|3298541_3299588_+	Fic family protein	NA	NA	NA	NA	NA
WP_100208325.1|3299598_3299739_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_010931303.1|3299735_3302855_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_010931302.1|3302856_3305808_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|3305823_3307035_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_155120819.1|3307071_3307233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3307219_3308170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3308186_3308681_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|3308684_3308942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853401.1|3308966_3310397_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_029443992.1|3310478_3310763_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|3311546_3312497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3311390:3311408	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|3312915_3315480_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|3315524_3317378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3317710_3319282_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3320723_3321674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|3321759_3322500_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|3322726_3323674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3325061_3326012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	3567603	3669995	4120993	transposase,tRNA	Bacillus_virus(27.27%)	96	NA	NA
WP_003813026.1|3567603_3568719_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|3568819_3569638_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|3569735_3570347_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_024000023.1|3570461_3571883_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.3e-109
WP_003813017.1|3571945_3572404_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|3572488_3573184_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|3573245_3573527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|3574089_3574842_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|3574886_3575963_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|3575959_3576910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|3577012_3577675_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|3577769_3577940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|3578292_3579294_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|3579296_3580493_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|3580513_3581317_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|3581397_3581694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|3581724_3582288_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|3582328_3583186_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|3583193_3583943_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|3583964_3584837_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|3584865_3585645_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|3585678_3586476_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486092.1|3587927_3589100_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_003808978.1|3589130_3589523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|3589516_3590377_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|3590380_3591343_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|3592119_3592809_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|3593669_3594620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|3594969_3595839_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|3595909_3596605_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|3596594_3597104_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|3597100_3598321_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|3598268_3599171_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023995373.1|3600057_3601344_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|3601382_3602756_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|3602794_3603496_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|3603794_3604784_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|3604884_3605346_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|3605361_3605910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|3606051_3607527_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|3607632_3608724_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|3608727_3609510_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|3609519_3610308_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|3611433_3611868_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|3611864_3612875_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|3612918_3613845_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|3614131_3614500_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|3614716_3615667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931164.1|3618185_3618878_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|3618950_3620150_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|3620167_3621073_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|3621188_3622118_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|3622143_3623490_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|3623517_3624267_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|3624280_3625063_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|3625255_3626206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879583.1|3626267_3627413_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|3627889_3628726_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|3628795_3629761_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3629757_3630708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740747.1|3630694_3630901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|3631093_3631636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3632671_3633622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|3633863_3634232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|3634277_3635402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|3636536_3637277_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|3637380_3638001_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|3638104_3639055_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|3639051_3641160_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|3641304_3641964_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|3641995_3642460_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|3642735_3642921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|3642972_3643725_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|3643731_3644994_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|3645035_3646274_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|3647351_3648479_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|3648489_3649317_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|3649303_3650170_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|3651536_3651941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3652032_3652983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|3653352_3654264_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|3654278_3654989_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|3654985_3656230_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|3656231_3656666_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|3656694_3657000_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_076879633.1|3656893_3657112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3657098_3658049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|3658105_3659254_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|3659334_3660285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|3660816_3661614_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|3661661_3662315_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|3662271_3663360_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|3663524_3665750_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|3668027_3668924_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_076879632.1|3668812_3669058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3669044_3669995_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	3700380	3771346	4120993	protease,transposase	uncultured_Mediterranean_phage(25.0%)	48	NA	NA
WP_005012808.1|3700380_3701331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3701387_3702500_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|3704883_3705834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|3706424_3707201_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|3707318_3707582_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|3707681_3708686_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|3708886_3710488_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|3710513_3711272_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|3711363_3712020_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|3712110_3712875_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|3712884_3713073_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|3713128_3714172_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|3714168_3714582_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|3714578_3715199_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|3715479_3716430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|3716597_3717989_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_101631021.1|3718093_3718639_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931117.1|3720267_3721473_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|3721572_3722091_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|3722185_3722431_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|3722658_3722973_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931115.1|3728247_3730416_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023995053.1|3730435_3732787_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_003820402.1|3732791_3734111_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931111.1|3735806_3736475_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|3736631_3740453_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|3740783_3741734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|3741755_3742901_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|3743049_3743979_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|3743975_3745064_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|3745060_3745864_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|3745860_3746592_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|3746649_3747939_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|3748035_3748638_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|3753192_3753531_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|3754238_3754505_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|3756211_3757162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|3757158_3758490_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247695.1|3759729_3761751_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|3761743_3762385_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|3762381_3762789_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|3762785_3763586_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|3763660_3764365_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|3764396_3765191_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|3765187_3766138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|3767284_3767719_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|3767801_3770138_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|3770329_3771346_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	3812416	3894549	4120993	transposase,tRNA	Bacillus_virus(28.57%)	60	NA	NA
WP_010929591.1|3812416_3813367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|3813454_3815107_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|3815117_3815906_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|3815905_3816376_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|3816450_3817764_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|3817817_3818423_-	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010927663.1|3818739_3819690_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|3819686_3820637_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879546.1|3820623_3820974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931069.1|3820897_3821926_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|3822005_3823304_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|3823300_3823882_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931066.1|3828480_3836142_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|3836138_3837089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|3838228_3838702_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|3838841_3839462_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|3839597_3840398_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|3840452_3841544_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|3841565_3842009_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|3842037_3842670_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|3842780_3843197_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|3843189_3843882_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|3843988_3844363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|3844439_3845249_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|3845344_3846289_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|3846327_3847299_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|3847389_3847827_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|3847885_3848767_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|3849770_3850631_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|3850663_3852046_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|3852042_3853062_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|3853434_3853929_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|3853936_3854677_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248319.1|3856400_3857210_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
WP_023995127.1|3857314_3859480_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|3860360_3861173_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|3861185_3861494_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|3861611_3863342_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|3863343_3864489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810957.1|3865407_3865875_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|3866010_3867393_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|3867389_3868514_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|3868510_3871147_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|3871562_3872513_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|3876259_3876871_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|3877093_3878554_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|3878650_3880243_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_076879563.1|3880229_3880508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931039.1|3880566_3880854_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|3880855_3882196_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|3882291_3882981_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|3882993_3884424_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|3886148_3886970_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|3886980_3888552_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|3888580_3889558_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|3889584_3890388_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|3890384_3891179_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|3891186_3892422_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|3892414_3892849_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3893598_3894549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP015766	Bordetella pertussis strain VA-15, complete genome	4120993	3898660	3939329	4120993	transposase,tRNA	Salmonella_phage(33.33%)	45	NA	NA
WP_005013747.1|3898660_3899611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|3899651_3900722_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|3900744_3901623_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|3901794_3902766_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|3902928_3903771_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|3903932_3904613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|3904606_3905776_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|3905772_3906804_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|3906847_3908089_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|3908123_3909656_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|3909736_3910360_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|3910390_3911002_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|3911037_3911508_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|3911939_3912944_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|3912980_3914495_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|3914498_3915458_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|3915486_3916290_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|3916291_3917926_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|3918009_3919071_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|3919269_3919539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|3919542_3920067_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|3920482_3921433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994671.1|3921429_3922500_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|3922572_3923211_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|3923505_3923733_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|3923855_3924569_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|3924813_3925764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302789.1|3925750_3925915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931009.1|3925867_3926149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|3926263_3927712_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_155120812.1|3927689_3927836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3927822_3928773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|3928769_3929219_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_023996094.1|3929265_3929427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|3929413_3930364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|3930699_3930897_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|3930912_3931272_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|3931346_3932369_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|3932381_3934799_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010931006.1|3934804_3935146_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_003812822.1|3935204_3935615_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|3936114_3937206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|3937389_3937986_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|3938085_3938268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3938378_3939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
