The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	8273	82617	4115775	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|8273_9224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|9220_10411_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|10532_11297_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|11383_12487_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|12678_13695_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|13976_14465_+	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|15808_16489_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|16550_17402_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817654.1|17398_18274_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|18299_19193_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|19204_21094_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|21430_25204_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|25200_26151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302770.1|26137_26305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|26459_27152_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|27525_28026_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|28132_29053_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|29069_29546_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|29639_31490_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|31545_32304_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|32331_33804_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|33838_34618_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|34630_35464_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815975.1|35472_36246_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|36242_37307_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|37458_40086_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|40149_42771_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|43698_44157_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|44435_46679_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|46875_48900_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|49023_49986_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|50197_51337_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|51359_52325_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|52520_53711_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|53724_53970_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|53998_56020_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|56066_57674_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|57774_58944_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|61825_62776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|62799_63858_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|63932_64307_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|64861_65812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995443.1|65798_65939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929833.1|67368_68214_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|68301_69465_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|69883_70855_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|70893_72321_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|72440_73232_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|73350_75804_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_003816023.1|75898_77014_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929554.1|77010_78420_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|78825_78960_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|79055_79427_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|79423_79696_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|79744_81436_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|81666_82617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	386899	448089	4115775	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|386899_387850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|388325_389216_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|389212_390034_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|390232_390724_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|390742_391816_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|391862_392966_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|393041_393662_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|393682_394192_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|394246_394498_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|394561_395695_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|395702_396089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|396085_398605_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|399033_399372_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|399368_399875_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|399936_400737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|400847_401789_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|401882_403418_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|405097_406948_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|406951_407785_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|407784_408726_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|408977_409973_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|410090_412379_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|412685_413594_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|413648_414614_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|414688_416350_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|416346_417132_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|417280_418231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|418929_419313_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|419370_419973_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|419990_420392_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|420525_421419_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|421415_421997_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|422791_423526_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|423566_424616_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|424763_425342_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|425728_426706_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|426799_431194_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|431394_432243_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|432401_433214_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|433269_434220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|434206_434371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|434318_435119_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|435180_435564_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|435575_437009_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|437215_437545_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|437547_438216_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|438479_439400_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|439446_439659_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|439681_440104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|440120_441221_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|441317_442835_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|442910_443750_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|443771_444653_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|444734_445829_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|446122_447073_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|447147_448089_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	453407	499604	4115775	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(17.39%)	52	NA	NA
WP_003814219.1|453407_454439_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|454479_454719_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|454788_456378_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|456377_456926_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|457006_457579_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|457597_458509_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|458582_459551_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|459673_460747_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|460751_462572_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|462648_463599_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|463687_464023_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|464156_464807_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|464828_466247_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|466316_467072_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|467040_467799_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|467809_468691_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|468707_469415_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|469417_470176_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|470385_472128_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|472120_472645_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|472684_473479_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|473646_474720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|474818_475769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|476020_476233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|476298_476910_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|477389_477710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|477702_478401_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|478415_478637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|478654_479605_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|480280_480730_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|480716_481994_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|481996_483415_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|483443_484499_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|484504_484747_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|484869_485472_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|485900_486851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|486868_487516_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|487525_487777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|487839_488322_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|488323_488524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|488523_488919_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|488915_489314_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|489310_489733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|489740_490241_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|490495_491014_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|491023_491353_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|491370_491661_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|491686_494299_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|494308_494668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|494735_495269_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|495265_495655_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|495647_499604_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 5
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	505770	559706	4115775	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|505770_507501_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|507553_507982_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|507984_508665_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|508664_509123_+	protein TolR	NA	NA	NA	NA	NA
WP_065507223.1|509159_510140_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|510156_511473_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|511504_512002_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|512088_512778_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|512777_513827_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|513823_514618_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|514786_515137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|515112_515670_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|516594_516813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|516799_517750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|520028_521117_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|521119_522562_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|522666_523812_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|523843_524641_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|524665_526225_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|526221_528594_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|528703_529807_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|529806_530499_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|530642_531344_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|531328_531706_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|532437_533388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|533374_533518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|533547_534420_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|534760_534979_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|535018_536398_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|536439_537837_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|537876_539529_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|539532_540417_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|540416_541358_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|541436_543056_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|543222_544038_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|544105_544675_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|544675_545626_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|546280_547378_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|547411_548677_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|548834_549785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|550028_550619_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|550634_553079_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|553198_554170_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|554301_554826_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|554785_555736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|555957_558153_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|558225_558633_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|558580_558769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|558755_559706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	682286	750262	4115775	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_065507224.1|682286_683303_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|683499_684483_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|686081_687470_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|687500_688490_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|688600_689833_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|690114_690915_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|690937_693169_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|693956_694403_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|694424_695171_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|695314_696292_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|696925_697537_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|697530_698748_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|698888_699839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|699835_700555_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|700675_702835_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|702925_703195_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|703283_703490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|703488_704016_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|704034_704814_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|704981_705998_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|706070_706562_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|706572_708288_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|709451_710402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|710398_712249_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|712629_713289_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|713376_713529_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|713637_713805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|713816_714497_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|714778_715495_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|715509_716811_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|718955_721844_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|722067_723420_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|723448_723970_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|723966_725421_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|725455_725704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|725809_726685_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|726710_727766_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|727778_728570_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|728602_729973_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|731025_731163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|731149_732100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|732152_732374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|732533_732746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|732865_733984_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|734080_734296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|734489_734741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|734853_735804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|735800_736184_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|736238_738056_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|738202_739030_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|739075_740056_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|740052_740265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|740261_741443_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|741606_742341_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|742342_744955_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|745090_747004_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|747619_748030_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|748127_749213_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|749311_750262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	773440	843707	4115775	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|773440_774391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|774471_775383_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|775443_776589_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|776608_777523_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|777594_778344_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|778343_779273_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|779516_781343_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|781425_782067_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|782256_783291_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|785127_786192_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|786989_787898_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|789385_790660_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|790813_791194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|791201_792074_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|792379_792760_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|792970_793696_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|793791_794742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|794846_795896_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|796033_797050_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|798558_799131_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|799190_799922_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|799973_800891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|801698_804878_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|804874_806257_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|806326_806578_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|806723_807374_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|807524_809639_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|809714_810566_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|810562_811189_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|811185_812940_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|813232_815938_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|815950_817612_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|817624_819415_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|819636_820812_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|820854_821805_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|821903_822644_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|822838_824875_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|824892_825903_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|826020_827214_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|827243_828017_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|828013_829204_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|829229_830168_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|830164_832513_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|832667_833375_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|833412_834546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|834638_834791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|834822_835371_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|835389_835875_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|836052_836991_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|836993_837311_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|837356_838301_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|839981_840632_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|840685_841021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|841017_841878_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|841894_842176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|842249_842513_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|842756_843707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	855925	913307	4115775	transposase,holin,tRNA	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|855925_856942_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|857772_858780_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|858776_860420_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|860416_861319_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|861444_861918_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|861907_862930_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|862926_864354_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|865291_866308_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|866640_867576_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|867625_869506_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|869572_869917_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|870061_871198_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|871194_872268_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|872425_873862_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|873952_874594_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|874929_875946_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|876278_879026_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|879092_880514_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|880777_881494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|881578_881896_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|881936_882350_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|882351_882711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|882753_884298_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|884381_885212_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|885246_886401_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|886443_887316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|887432_889721_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|890927_891392_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|891418_892369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|892736_893513_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|893557_894415_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|894436_895453_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|895587_896628_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|896822_898904_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|899139_900633_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|900863_901658_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|901878_903237_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|903233_904076_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|904094_905981_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|906218_906851_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|906869_907472_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|907475_907637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|907623_908574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|909376_910177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|910220_911207_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|911346_912360_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|912356_913307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	1112329	1177758	4115775	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1112329_1113280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219856.1|1113266_1113404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930283.1|1114048_1114687_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1115576_1116023_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1116104_1116806_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1116806_1117574_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1117570_1118809_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1118808_1119735_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1119837_1120953_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1120968_1121919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740682.1|1121905_1122148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930287.1|1122272_1122854_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1122850_1123684_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1123894_1125208_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1125384_1126266_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1126285_1127137_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1127189_1128278_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1128388_1129516_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1129750_1130362_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|1130460_1131411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|1131509_1132460_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1132681_1133059_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1133206_1133704_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1133700_1134228_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1134361_1135177_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1135189_1136371_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1136418_1137312_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1137438_1137909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1138034_1138862_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1138890_1139667_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_003811307.1|1139663_1139957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1139953_1140418_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_077274085.1|1140429_1141215_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1141240_1141741_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1141823_1143002_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1144629_1144965_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1145152_1146601_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1146658_1147003_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1147109_1147649_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1147741_1148692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068979.1|1148678_1149161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1149430_1149862_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1150043_1150448_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1151684_1152008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1152010_1152898_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1152930_1153356_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1153427_1153781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1154020_1154527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1154565_1155897_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1155956_1156772_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1156768_1157623_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1160685_1163229_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1164595_1166350_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1166346_1168467_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1168471_1170667_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1170663_1174005_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_153302775.1|1176665_1176821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1176807_1177758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	1242356	1297844	4115775	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1242356_1243307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1244508_1244955_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1244947_1246423_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1246419_1247175_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1247167_1248178_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1248167_1249844_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1250156_1250489_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1250502_1250898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1250907_1251234_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1251230_1251557_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1251483_1252506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811825.1|1252502_1252883_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1252900_1253329_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1253336_1254710_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1254850_1255228_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1255490_1256798_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1256858_1257689_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1257685_1258174_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1258215_1259736_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1259779_1260256_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1261059_1263657_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1263686_1264508_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1265234_1265984_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_003811801.1|1266116_1267046_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1267143_1267860_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1267874_1268435_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010926572.1|1268472_1269366_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
WP_010930351.1|1269385_1270243_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1270239_1271439_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1271478_1272813_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1272865_1275202_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1275327_1275891_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1275899_1276991_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1277062_1277518_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1277518_1278313_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1278309_1279491_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1279477_1280083_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1280079_1280853_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1280864_1281692_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1281853_1284217_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1284284_1285004_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1285127_1285553_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1285587_1286538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1286655_1287582_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1287647_1288805_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1288785_1289253_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1289400_1290351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1290367_1290802_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1290791_1291142_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1291338_1292493_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1292489_1293662_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1293709_1294603_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1294648_1295086_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1295145_1295835_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1295844_1296795_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1296893_1297844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	1503009	1572661	4115775	transposase,tRNA	Staphylococcus_phage(16.67%)	56	NA	NA
WP_003818515.1|1503009_1505667_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1505744_1506947_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1506943_1507456_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810262.1|1507578_1507917_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1508292_1509243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069089.1|1509341_1510292_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1510455_1512351_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1512464_1512632_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1512695_1512932_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1513300_1514500_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1516015_1516966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1517417_1518419_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1518591_1519449_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1519445_1520708_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1520808_1521183_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|1521231_1522443_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1522527_1523298_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1523411_1524176_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|1524291_1525428_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1525424_1526231_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1527975_1528947_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1529103_1529616_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1529774_1530749_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1531749_1532544_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1532569_1533376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|1533486_1534077_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1534087_1535266_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1535368_1535743_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1535995_1537327_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1537393_1540624_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1542114_1542861_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1542945_1543407_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1543444_1544503_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1544465_1546295_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1546334_1546907_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|1548331_1549243_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|1549471_1550794_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1551153_1551789_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1551748_1552699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1553569_1554442_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1554519_1555659_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|1556008_1557274_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1557279_1557807_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1557811_1558630_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1558629_1559352_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1559373_1559688_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|1559684_1560854_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1560884_1561760_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1561756_1563076_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1563148_1564345_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1564355_1565843_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1568437_1569337_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1569474_1570440_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1570538_1571489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|1571532_1571724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1571710_1572661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	1584157	1633553	4115775	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1584157_1585108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1586245_1586542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1586716_1588069_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1588211_1589228_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1591207_1592221_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|1592307_1593213_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1593369_1593714_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1593871_1594330_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1594343_1596560_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1596556_1597618_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1597646_1598621_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1598572_1599391_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1599403_1600012_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|1600186_1600582_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1600600_1602040_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1602068_1602416_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1602434_1603385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|1603371_1603533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1604037_1604988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1605071_1606889_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|1606962_1607610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1607622_1608552_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|1608721_1609186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|1609433_1610114_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|1610162_1611854_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|1611869_1612421_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|1612417_1612789_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|1612901_1613738_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|1613748_1614273_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1614370_1614550_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|1614679_1615711_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|1615784_1616141_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|1616130_1617006_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|1617104_1617989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|1618010_1619306_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|1620254_1620905_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|1620992_1622513_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|1622770_1624636_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1625681_1626632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|1627604_1627964_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|1627951_1629388_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|1629384_1630038_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|1630034_1631234_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|1631331_1632606_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|1632602_1633553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	1644757	1685448	4115775	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|1644757_1645708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1645806_1646757_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|1646716_1647130_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|1647414_1647714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|1648123_1650292_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_124740709.1|1650871_1651066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|1651091_1653122_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|1653141_1653354_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|1653631_1654171_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|1654284_1655592_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|1655656_1656814_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|1656997_1657897_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|1657915_1659220_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|1659185_1660292_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|1660379_1660616_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|1660754_1661825_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|1661828_1663184_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|1663210_1664371_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|1664373_1665012_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|1665013_1666318_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|1666358_1667654_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|1667660_1668167_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|1668163_1669312_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|1669339_1669765_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|1670087_1672970_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|1673062_1673818_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|1674583_1675933_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_077069202.1|1676031_1676982_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|1677080_1678031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|1678104_1678578_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|1678603_1679812_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|1679808_1680582_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|1680581_1681205_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|1681370_1681631_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|1681934_1682516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|1682582_1682837_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|1682823_1685448_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 14
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	1713231	1778779	4115775	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	59	NA	NA
WP_010929577.1|1713231_1714182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|1714168_1714327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|1714382_1715192_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|1715316_1716267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|1716263_1717157_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|1717281_1717476_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|1717475_1717817_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|1717826_1719689_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|1719818_1720331_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|1720333_1720657_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|1720658_1721069_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|1721106_1722318_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|1722335_1722848_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|1723063_1723555_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|1723807_1725844_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|1725921_1727124_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|1727174_1727903_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_010929591.1|1729460_1730411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|1730981_1731194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|1731211_1731943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|1731977_1732619_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|1732611_1733328_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|1735492_1736269_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|1736290_1737448_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|1737444_1737876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|1737872_1738676_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|1738689_1739145_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|1739157_1740129_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|1740194_1741418_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|1741645_1742596_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|1742719_1745173_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|1745361_1746666_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|1746770_1747424_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|1747426_1748737_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|1748915_1749494_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|1749605_1749806_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|1750151_1750718_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|1750801_1751005_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|1751311_1751632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|1751673_1751955_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|1752029_1753286_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|1753668_1753998_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|1755567_1756389_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1756388_1757528_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|1757534_1758431_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|1758427_1760353_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|1760712_1763325_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|1763377_1765678_-	AAA family ATPase	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|1765674_1766883_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|1767144_1767519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1767515_1768466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|1768564_1770559_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|1770618_1771584_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|1771573_1774435_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|1774437_1774944_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|1775048_1776257_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|1776258_1777197_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|1777358_1777832_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|1777828_1778779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	2094433	2155781	4115775	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2094433_2095384_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2095500_2096220_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2096392_2097379_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2097379_2097862_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2097865_2099149_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2099145_2100084_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2100080_2101790_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2101799_2103047_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2104657_2105947_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2107084_2107858_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2108519_2109263_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2109337_2110078_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2110273_2111110_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2111160_2111931_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2111980_2113033_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2113029_2113656_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2113652_2114699_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2114865_2115882_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2115980_2116931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2119671_2120961_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2121079_2121550_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2121560_2122769_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2122915_2123380_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2123403_2124354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2125338_2126112_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2126108_2127107_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2127191_2127968_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2128123_2129791_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2130108_2131233_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2131359_2131983_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2131979_2133881_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2133929_2134724_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2134736_2135738_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2135734_2136241_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2136233_2137082_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2137179_2137722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2137765_2138716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2138871_2139198_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2139194_2139479_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2139475_2139955_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2139951_2141580_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2141576_2141921_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2141920_2144854_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2146012_2146963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2147061_2147358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2147464_2148382_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2148386_2149100_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2149113_2150085_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2151804_2152185_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2152188_2153376_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2153814_2154537_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2154830_2155781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	2176572	2247726	4115775	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2176572_2177523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2178075_2179701_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2179750_2180785_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2180787_2182134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2182130_2183645_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2183635_2184646_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2185119_2186061_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2186069_2187038_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2188577_2189546_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2189723_2190713_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2190759_2191518_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2191707_2192445_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2192395_2192557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2192543_2193494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2193678_2194461_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2194454_2195156_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2195395_2195998_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2197182_2197338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2197324_2198275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2198271_2199828_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2199820_2200594_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2200652_2201603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2201684_2202860_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2202873_2204931_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2204927_2205953_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2205964_2207254_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2207276_2208374_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2208370_2209261_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2209257_2211342_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2211373_2212543_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2212584_2213325_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2213324_2214095_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930465.1|2214950_2215736_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2215762_2217847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2218014_2219970_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2220293_2220794_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2220892_2222419_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2222556_2223444_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2223458_2224412_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2224463_2226554_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2226569_2226956_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2229649_2230453_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2231746_2232649_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2232713_2233490_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2233811_2234861_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2234984_2236655_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2236659_2237454_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2237552_2238503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2238522_2239428_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2239505_2240204_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2240363_2241308_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2241317_2242808_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2242804_2243872_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2243935_2245348_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2245533_2246754_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2246775_2247726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	2331926	2394227	4115775	transposase,tRNA	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2331926_2332877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2332975_2333746_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2333742_2334414_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2334410_2335052_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2335064_2335985_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2336145_2337306_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2337347_2338298_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2338896_2339121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2339285_2340980_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2341101_2341371_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2341486_2341885_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2341895_2342852_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2342988_2343534_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2343554_2345504_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2345891_2346668_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2346673_2347066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2347487_2348438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2348434_2349532_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2349563_2350514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2352295_2353537_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2353548_2354322_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2354348_2355299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2355397_2356180_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2356268_2357495_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2358220_2359606_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2359624_2360230_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2360226_2362083_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2362079_2362880_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2362894_2364088_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2364155_2365130_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2365252_2366476_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2366586_2368791_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2369085_2369745_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2369752_2369959_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2370297_2371053_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2371068_2371230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2371323_2371839_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2372111_2372429_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2372616_2372865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2373143_2374499_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2374545_2375925_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2375987_2376620_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2376619_2378980_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2379021_2379981_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2379967_2380654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2380650_2380983_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2381098_2382049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2382045_2384112_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2384111_2384384_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2385078_2385168_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2385167_2386952_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2386975_2389141_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2389151_2389751_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2392572_2393268_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2393276_2394227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	2480344	2521013	4115775	transposase,tRNA	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2480344_2481295_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2481405_2481588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2481687_2482284_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2482467_2483559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2484058_2484469_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2484527_2484869_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2484874_2487292_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2487304_2488327_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2488401_2488761_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2488776_2488974_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2489309_2490260_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2490246_2490408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2490454_2490904_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2490900_2491851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|2491837_2491984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2491961_2493410_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2493524_2493806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2493758_2493923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2493909_2494860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2495104_2495818_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2495940_2496168_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2496462_2497101_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2497173_2498244_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2498240_2499191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2499606_2500131_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2500134_2500404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2500602_2501664_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2501747_2503382_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2503383_2504187_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2504215_2505175_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2505178_2506693_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2506729_2507734_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2508165_2508636_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2508671_2509283_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2509313_2509937_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2510017_2511550_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2511584_2512826_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2512869_2513901_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2513897_2515067_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2515060_2515741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2515902_2516745_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2516907_2517879_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2518050_2518929_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2518951_2520022_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2520062_2521013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	2576478	2649348	4115775	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2576478_2576895_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2577005_2577638_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2577666_2578110_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2578131_2579223_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2579277_2580078_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2580213_2580834_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2580973_2581447_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2582586_2583537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2583533_2591195_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2591435_2595482_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2595794_2596376_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2596372_2597671_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2597750_2598779_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2598702_2599053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2599039_2599990_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2599986_2600937_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2601253_2601859_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2601912_2603226_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2603300_2603771_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2603770_2604559_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2604569_2606222_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2606309_2607260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2608421_2608928_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2608924_2609689_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2609704_2609989_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2610053_2611043_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2611214_2612144_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2612115_2612802_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2612835_2613381_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2613425_2614691_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2614687_2615590_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2616771_2617716_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2617810_2619328_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2619369_2620998_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2621105_2621987_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2625099_2625474_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2625498_2625837_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2625880_2627515_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2627553_2628900_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2629007_2630429_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2630498_2631083_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2631185_2632136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2632270_2633377_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2633387_2634485_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2634629_2635835_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2635841_2636363_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2636359_2636851_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2636847_2637099_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2637079_2637565_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2637700_2641162_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2641158_2642064_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2642073_2642505_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2642751_2643255_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2643266_2644733_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2644807_2645683_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2645679_2646687_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2647154_2647460_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2647550_2648141_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2648331_2649348_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	2652491	2719303	4115775	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_005013747.1|2652491_2653442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2653540_2654491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2654487_2655282_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2655313_2656018_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2656092_2656893_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2656889_2657297_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2657293_2657935_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2657927_2659949_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2661188_2662520_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2662516_2663467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2665173_2665440_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2666147_2666486_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2671040_2671643_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2671739_2673029_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2673086_2673818_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2673814_2674618_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2674614_2675703_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2675699_2676629_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2676777_2677923_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2677944_2678895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2679225_2683047_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2683203_2683872_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2683876_2685550_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2685568_2686888_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2686892_2689244_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2689263_2691432_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2691428_2696618_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2696707_2697022_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2697249_2697495_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2697589_2698108_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2698207_2699413_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2699528_2700926_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2701042_2701621_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2701693_2703085_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2703252_2704203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2704483_2705104_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2705100_2705514_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2705510_2706554_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2706609_2706798_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2706807_2707572_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2707662_2708319_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2708410_2709169_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2709194_2710796_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2710996_2712001_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2712101_2712365_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2712482_2713259_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2713849_2714800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2717183_2718296_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2718352_2719303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	2749689	2843726	4115775	transposase	Bacillus_virus(27.27%)	90	NA	NA
WP_005012067.1|2749689_2750640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2750626_2750872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2750760_2751657_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2753934_2756160_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2756324_2757413_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2757369_2758023_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2758070_2758868_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2759399_2760350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2760430_2761579_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2761635_2762586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2762572_2762791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2762684_2762990_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2763018_2763453_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2763454_2764699_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2764695_2765406_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2765420_2766332_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|2766701_2767652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|2767743_2768148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2768144_2768603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2768609_2769518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2769514_2770381_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2770367_2771195_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2771205_2772333_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2773410_2774649_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2774690_2775953_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2775959_2776712_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2776763_2776949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2777224_2777689_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2777720_2778380_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2778524_2780633_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2780629_2781580_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2781683_2782304_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2782407_2783148_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2784282_2785407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2785452_2785821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2786062_2787013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2788048_2788591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2788783_2788990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2788976_2789927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2789923_2790889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2790958_2791795_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|2792271_2793417_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|2793478_2794429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2794621_2795404_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|2795417_2796167_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|2796194_2797541_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|2797566_2798496_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|2798611_2799517_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|2799534_2800734_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|2800806_2801499_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|2801547_2803974_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|2804018_2804969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|2805185_2805554_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|2805840_2806767_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|2806810_2807821_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|2807817_2808252_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|2809377_2810166_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|2810175_2810958_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|2810961_2812053_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|2812158_2813634_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|2813775_2814324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|2814339_2814801_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|2814901_2815891_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|2816189_2816891_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|2816929_2818303_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|2818341_2819628_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|2820514_2821417_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|2821364_2822585_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|2822581_2823091_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|2823080_2823776_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|2823846_2824716_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929588.1|2825065_2826016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|2826876_2827566_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|2828342_2829305_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|2829308_2830169_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|2830162_2830555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486092.1|2830585_2831758_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_014486094.1|2833209_2834007_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|2834040_2834820_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486096.1|2834848_2835721_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003818698.1|2835742_2836492_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|2836499_2837357_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|2837397_2837961_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|2837991_2838288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|2838368_2839172_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818702.1|2839192_2840389_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247599.1|2840391_2841393_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|2841745_2841916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|2842010_2842673_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2842775_2843726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	2917012	2980846	4115775	transposase,tRNA,protease	Pseudomonas_phage(30.0%)	58	NA	NA
WP_005015810.1|2917012_2917963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|2918108_2919233_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|2919438_2920002_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|2920996_2921479_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|2921636_2922884_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|2923103_2923760_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|2923795_2925025_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_023995983.1|2925147_2925306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2925292_2926243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|2926334_2927750_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|2927755_2928892_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|2928961_2929333_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|2929420_2930167_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|2930203_2931268_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|2931456_2931849_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|2931858_2932287_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|2932582_2933680_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|2934021_2935386_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|2935444_2935996_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|2936009_2936684_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|2937940_2938750_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|2938752_2939589_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|2939603_2940296_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|2940307_2940697_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|2940802_2942191_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|2942307_2943804_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|2944100_2944775_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076879584.1|2944668_2944887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2944873_2945824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|2945820_2948280_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|2948376_2949822_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|2949825_2951013_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|2951081_2951591_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|2951792_2952245_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|2952806_2955869_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|2956174_2959102_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|2959123_2960320_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|2960637_2961165_+	histone	NA	NA	NA	NA	NA
WP_010931237.1|2961303_2961879_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|2961886_2963350_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|2963360_2964488_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814939.1|2964495_2964621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814941.1|2964617_2965745_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|2965770_2966010_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|2966290_2966794_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|2966966_2967908_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|2967919_2969017_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|2969982_2971329_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|2971338_2971788_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|2971877_2972312_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|2972390_2972939_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|2973021_2974392_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|2974402_2974996_+	esterase	NA	NA	NA	NA	NA
WP_014486102.1|2975067_2976951_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|2976988_2977888_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|2977884_2978748_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2978846_2979797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2979895_2980846_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3028990	3043178	4115775	transposase,protease	Erwinia_phage(100.0%)	16	NA	NA
WP_005012808.1|3028990_3029941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995100.1|3029900_3030077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|3030385_3030697_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3030696_3031227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154299518.1|3031235_3031403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3031389_3032340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3032629_3033094_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3033108_3034614_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3034867_3036475_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3036530_3037436_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3037876_3038827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3038925_3039876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3039957_3040539_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3040963_3041269_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3041282_3042617_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3042638_3043178_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 24
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3061601	3113520	4115775	transposase,holin,tRNA	Tupanvirus(16.67%)	43	NA	NA
WP_010931277.1|3061601_3061937_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3061936_3062779_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3062877_3063828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3063892_3064864_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3064927_3065947_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3065948_3067322_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3067599_3068280_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3068292_3070419_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3070415_3071510_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3071524_3072784_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3072803_3074528_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3074766_3075519_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023994812.1|3075527_3075671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|3075657_3076608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3076920_3078399_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3078405_3079515_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3079526_3080207_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3080228_3080984_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3081119_3082004_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3082091_3082673_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931295.1|3082765_3082888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566249.1|3082933_3083233_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_076879609.1|3083384_3083810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003808356.1|3086016_3086520_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3086535_3087486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_085964339.1|3087472_3087670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814148.1|3088013_3088787_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3088919_3089930_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3090081_3091737_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3091791_3092133_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3092146_3093586_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3093718_3094534_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996332.1|3094552_3094741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3094727_3095678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3097065_3098013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3098239_3098980_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3099065_3100016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3101457_3103029_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3103361_3105215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3105259_3107824_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3108242_3109193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3112058_3112553_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_005013747.1|3112569_3113520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3175423	3229164	4115775	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|3175423_3176374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3176778_3177423_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3177447_3178032_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3178132_3178750_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3178752_3180468_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3180464_3180773_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3180789_3181425_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3181451_3181754_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3181854_3182709_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3182896_3183121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3183290_3183563_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3183980_3184388_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3184757_3185552_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3185652_3186888_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3186956_3187973_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3187969_3189361_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3189357_3190554_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3190550_3192089_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3192085_3193345_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3195285_3196236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3196222_3196399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3197002_3198097_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3198089_3199424_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3199377_3200061_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3200086_3201250_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3201246_3202248_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3202247_3203120_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3203116_3203866_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3203862_3204654_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3204650_3205790_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3206098_3206851_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3206884_3207667_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3207670_3208060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3209199_3210063_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3210098_3211187_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3211183_3212134_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3212120_3212534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3212487_3215466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3216392_3217271_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3219219_3220170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3220166_3220634_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3220676_3221447_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3221467_3222268_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3222278_3223688_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3223782_3224568_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3224807_3225824_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3225931_3226324_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3226461_3227142_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3227146_3228145_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3228213_3229164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3235319	3294619	4115775	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3235319_3237083_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3237194_3238073_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3238185_3239001_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3239004_3239256_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3239340_3240357_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3240687_3240909_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3243269_3244187_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3244684_3245893_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3245972_3247544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3247661_3248597_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3248785_3249730_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3249798_3250014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3250297_3256015_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3256020_3257148_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3257203_3257830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3258101_3259118_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3259213_3259924_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3259920_3260910_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3261041_3262637_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3262639_3263377_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3263532_3264405_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3264673_3265894_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3265890_3266550_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3266621_3267254_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3267283_3267802_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3267812_3268922_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3268968_3269823_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3269824_3270727_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3271949_3272900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3274656_3275646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3275821_3276610_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3276606_3277638_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3277656_3278220_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3278275_3279796_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3280059_3280764_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3280771_3281509_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3281614_3281989_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3282031_3283321_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3283317_3284487_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3284483_3285323_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3285382_3286318_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3286330_3287281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3287379_3288342_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3288373_3288733_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3288857_3289760_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3289761_3291534_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3291568_3292345_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3293668_3294619_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3309557	3367630	4115775	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3309557_3310508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3310636_3311770_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3311813_3312719_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3312721_3314422_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3314418_3315339_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3315346_3316324_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3316382_3317417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3319391_3319628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3319754_3320618_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3320706_3321528_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3321607_3322345_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3322341_3323334_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3323447_3324110_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3324154_3325303_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3327626_3328577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3328917_3329868_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3329966_3330917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3331213_3331711_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3331753_3333529_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3333575_3334403_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3334409_3335144_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3336313_3337108_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3337397_3337988_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3338021_3339350_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3339424_3340570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3340681_3341680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3341642_3342077_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3343593_3344478_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3344474_3345680_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3345676_3346537_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3346649_3348440_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3348480_3349146_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3349146_3349455_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3349620_3350907_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3352340_3353291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3355242_3356457_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3356562_3357552_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3357548_3358157_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3358169_3358799_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3358795_3359416_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3359447_3360239_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3361081_3361546_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3361564_3362491_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3362544_3363831_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3364761_3365634_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3365630_3366581_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3366679_3367630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3377430	3448771	4115775	transposase,tRNA	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
WP_010929957.1|3377430_3378705_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3379427_3380378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3380476_3381427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929955.1|3381525_3383901_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929954.1|3383920_3384757_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010929953.1|3384753_3385551_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929952.1|3385547_3387737_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929951.1|3387788_3388775_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929950.1|3388856_3390659_-	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929949.1|3390916_3393034_+	crotonase	NA	NA	NA	NA	NA
WP_076879537.1|3393030_3394248_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929947.1|3394269_3394758_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929946.1|3394907_3396740_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929945.1|3396937_3397918_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929944.1|3397974_3398994_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815697.1|3399057_3399951_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929943.1|3400349_3401129_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929942.1|3401128_3403270_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929941.1|3403417_3404362_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929940.1|3404445_3405429_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003815690.1|3405793_3407068_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA	NA
WP_010929939.1|3407098_3407527_+	RidA family protein	NA	NA	NA	NA	NA
WP_003815682.1|3407537_3408212_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929938.1|3408204_3409377_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_010929937.1|3409509_3410529_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929936.1|3410709_3411900_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|3411913_3413044_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929934.1|3413087_3414809_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_003815672.1|3414927_3415890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815671.1|3415996_3416968_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247835.1|3417586_3418255_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815668.1|3418251_3418659_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010929577.1|3418655_3419606_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3422050_3422785_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3423194_3423374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3423564_3424878_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3424893_3426405_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3426401_3427607_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3427802_3428780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|3428872_3429367_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|3429496_3430555_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|3430551_3432171_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_077274092.1|3432130_3432439_-	GtrA family protein	NA	NA	NA	NA	NA
WP_010929784.1|3432358_3433462_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|3433458_3433914_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|3433919_3434843_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|3434932_3435592_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|3435588_3436503_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|3436591_3437542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879611.1|3437620_3438598_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|3439058_3439658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807867.1|3439726_3440719_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486054.1|3440768_3442358_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_014486053.1|3442398_3443295_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486052.1|3443291_3444998_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_003819219.1|3445102_3446344_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486051.1|3446340_3447111_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_014486050.1|3447159_3447861_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486049.1|3447787_3448771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3518593	3634264	4115775	transposase,tRNA,protease	Bacillus_phage(12.5%)	104	NA	NA
WP_005013747.1|3518593_3519544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302769.1|3519530_3519680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814960.1|3519666_3520395_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_023852939.1|3520401_3521670_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3521666_3522500_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3522536_3523277_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3523396_3524572_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3524568_3525522_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3525535_3525937_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_019248876.1|3525929_3526607_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3526622_3526787_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3526903_3527752_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3527748_3528402_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3528418_3529702_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3529941_3531567_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3531660_3532062_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3532086_3532521_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3532522_3534172_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3534212_3535382_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3535384_3536248_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3539611_3540316_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3540309_3541104_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3541100_3542066_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3542069_3542990_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3543086_3544250_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3544472_3545363_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3545366_3545870_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3545912_3546911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3546907_3547858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3547946_3548234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154299516.1|3548280_3548439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3548425_3549376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3549435_3549996_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3551498_3552380_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3552493_3553696_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3553824_3555684_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3555761_3556571_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3556641_3557643_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3557674_3558535_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3558734_3559739_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3559735_3561322_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3561330_3562257_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3562279_3562906_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3563004_3563955_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3563951_3565088_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3565141_3565918_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3565942_3566401_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3566540_3567182_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3567246_3568629_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3568648_3569503_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3569661_3570273_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3570282_3570732_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3571250_3571391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3571398_3571560_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077068974.1|3571635_3571851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3571837_3572788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3573831_3574110_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_085964336.1|3575252_3575828_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929715.1|3575863_3577543_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3577539_3579291_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3579287_3579413_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3579426_3580581_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010929713.1|3580596_3582216_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3582299_3582845_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3583404_3584355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3585085_3586066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3586079_3587204_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3587211_3588966_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3589072_3589972_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3590036_3591020_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3591155_3592136_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3592152_3593544_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3593695_3594232_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3594162_3595548_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3595690_3596329_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3596415_3598305_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3598301_3599243_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3599348_3600398_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3600650_3601352_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3601348_3602047_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3602047_3603403_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3603399_3603891_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3603909_3604866_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3606276_3608379_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3608549_3609593_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3609636_3610380_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3611401_3611812_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3612761_3613559_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_153302767.1|3613497_3613671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930742.1|3613657_3614608_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3614604_3615555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3615641_3616592_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3616706_3617708_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3617798_3618365_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3618683_3620597_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_065507228.1|3620638_3622069_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3622181_3623594_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3623610_3624306_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3624525_3625476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3625500_3626400_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3626554_3627103_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3627141_3627861_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3627932_3630875_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|3631468_3634264_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 30
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3674677	3742502	4115775	transposase,tRNA	Bacillus_phage(22.22%)	60	NA	NA
WP_010929591.1|3674677_3675628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068973.1|3675614_3675794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|3675834_3676311_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|3676392_3677076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|3677100_3678708_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|3678756_3679386_-	LysE family transporter	NA	NA	NA	NA	NA
WP_029443820.1|3679419_3680802_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_003815889.1|3681132_3681762_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|3681739_3682642_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|3684085_3685036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|3685594_3687157_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|3687153_3687789_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|3688017_3689040_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|3689205_3689982_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|3690145_3690844_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|3690855_3692166_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|3692221_3692899_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|3692895_3694293_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|3694398_3694860_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929651.1|3694943_3696164_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929650.1|3696215_3697091_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|3697192_3697624_+	VOC family protein	NA	NA	NA	NA	NA
WP_065507229.1|3697648_3698377_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|3698373_3699354_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|3700120_3700903_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446330.1|3701069_3701993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|3702064_3702823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|3702841_3703285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|3703305_3704118_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|3704123_3705056_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|3705039_3706263_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|3706350_3707133_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|3707185_3711148_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|3711894_3713403_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_153302766.1|3713691_3713835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3713821_3714772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|3716038_3716917_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|3716944_3717247_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|3717339_3718779_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|3718777_3719425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|3719851_3721552_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|3721642_3722896_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|3723789_3724179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929637.1|3724175_3725186_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|3726022_3726856_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|3726852_3727758_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_005012067.1|3727856_3728807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|3728907_3729729_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|3729834_3730875_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|3730917_3732210_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|3732220_3733096_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|3733092_3733893_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|3733968_3734985_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|3735267_3735585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|3735675_3736023_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|3736310_3737993_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|3738002_3738686_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|3738747_3739377_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|3739458_3740652_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|3741551_3742502_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3770325	3807315	4115775	transposase	Sphingobium_phage(33.33%)	33	NA	NA
WP_041166334.1|3770325_3771270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3771344_3772295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|3772291_3773701_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_076879597.1|3773899_3774649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807805.1|3774650_3774902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|3774990_3775572_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|3775603_3776224_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|3776385_3778293_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|3779485_3779800_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|3779893_3780844_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|3781265_3782447_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|3783076_3784348_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|3784382_3785441_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019248465.1|3785544_3785862_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|3785874_3786456_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929598.1|3786650_3787487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929597.1|3787910_3788852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929596.1|3789035_3789455_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|3789454_3790681_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_005012808.1|3791481_3792432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929594.1|3792525_3793425_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|3793504_3794266_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|3794262_3794952_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|3794976_3795567_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|3795572_3796307_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_029443813.1|3797538_3798795_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929591.1|3798837_3799788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|3799923_3800538_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|3800534_3801782_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003815255.1|3804000_3804894_-	membrane protein	NA	NA	NA	NA	NA
WP_003815265.1|3805021_3805258_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815267.1|3805229_3805865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|3806364_3807315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP015768	Bordetella pertussis strain VA-62, complete genome	4115775	3861644	3928807	4115775	transposase,tRNA	Planktothrix_phage(37.5%)	59	NA	NA
WP_010931687.1|3861644_3862997_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_003816050.1|3863113_3864700_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931686.1|3864719_3865694_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931685.1|3865690_3866611_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931684.1|3866637_3867639_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	8.9e-15
WP_019248556.1|3867635_3868652_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_019248557.1|3868709_3869909_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003816037.1|3870038_3870962_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931682.1|3871005_3872049_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931681.1|3872050_3872866_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.4	6.1e-30
WP_010927255.1|3872862_3873744_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929556.1|3873804_3875253_-	catalase	NA	A0A2K9L0T1	Tupanvirus	40.8	3.2e-106
WP_153302799.1|3875236_3875389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3875375_3876326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853477.1|3876872_3878111_-	CoA transferase	NA	NA	NA	NA	NA
WP_003819309.1|3878192_3878972_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931679.1|3878968_3879976_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003808010.1|3880149_3880836_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853488.1|3880916_3881678_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_010931677.1|3881674_3882499_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931676.1|3882500_3883469_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931675.1|3883491_3884904_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931674.1|3884943_3886098_-	CoA transferase	NA	NA	NA	NA	NA
WP_077274100.1|3886087_3887110_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930363.1|3886998_3887949_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996063.1|3887935_3888112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815086.1|3888131_3888905_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003815084.1|3888994_3889804_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931673.1|3889814_3890891_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_010931672.1|3894742_3895390_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010927126.1|3895601_3896510_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003815073.1|3896506_3897178_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_003815070.1|3897496_3898513_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815068.1|3898632_3899823_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815066.1|3899824_3900925_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815064.1|3900979_3901720_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_010931671.1|3901840_3902863_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815061.1|3902862_3903330_+	membrane protein	NA	NA	NA	NA	NA
WP_010931670.1|3903348_3904875_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_010931669.1|3904861_3906319_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_003815055.1|3906416_3906605_+	DUF3460 family protein	NA	NA	NA	NA	NA
WP_003815053.1|3906631_3907519_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815051.1|3907563_3908406_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815049.1|3908503_3908851_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815047.1|3908933_3909677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820519.1|3909917_3910757_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_019247320.1|3910759_3911410_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003815038.1|3911442_3912204_+	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931666.1|3912384_3913635_+	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010931665.1|3913631_3916700_+	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003815032.1|3916696_3919804_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_023994937.1|3919800_3921294_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010929577.1|3921290_3922241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3922339_3923290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3923388_3924339_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815027.1|3924439_3925402_-	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010931663.1|3925394_3926261_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_010931662.1|3926460_3927687_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931661.1|3927856_3928807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
