The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	30905	98730	4116920	tRNA,transposase	Bacillus_phage(22.22%)	60	NA	NA
WP_010929591.1|30905_31856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068973.1|31842_32022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|32062_32539_+	bacterioferritin	NA	NA	NA	NA	NA
WP_010929663.1|32620_33304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815895.1|33328_34936_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929661.1|34984_35614_-	LysE family transporter	NA	NA	NA	NA	NA
WP_029443820.1|35647_37030_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_003815889.1|37360_37990_+	LemA family protein	NA	NA	NA	NA	NA
WP_010929659.1|37967_38870_+	YgcG family protein	NA	NA	NA	NA	NA
WP_005015810.1|40313_41264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929658.1|41822_43385_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_023853232.1|43381_44017_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|44245_45268_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|45433_46210_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|46373_47072_+	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|47083_48394_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|48449_49127_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929653.1|49123_50521_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|50626_51088_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929651.1|51171_52392_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929650.1|52443_53319_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|53420_53852_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|53876_54605_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|54601_55582_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_003815135.1|56348_57131_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446330.1|57297_58221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|58292_59051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|59069_59513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|59533_60346_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|60351_61284_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|61267_62491_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|62578_63361_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247146.1|63413_67376_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|68122_69631_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_153302766.1|69919_70063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|70049_71000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929512.1|72266_73145_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815905.1|73172_73475_-	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_023853393.1|73567_75007_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_010929640.1|75005_75653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929639.1|76079_77780_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929638.1|77870_79124_-	amidase	NA	NA	NA	NA	NA
WP_019247800.1|80017_80407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929637.1|80403_81414_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003815918.1|82250_83084_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014905488.1|83080_83986_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_010929591.1|84084_85035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929635.1|85135_85957_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|86062_87103_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929633.1|87145_88438_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|88448_89324_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|89320_90121_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931363.1|90196_91213_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|91495_91813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|91903_92251_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|92538_94221_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|94230_94914_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|94975_95605_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|95686_96880_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929626.1|97779_98730_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	126553	162494	4116920	transposase	Sphingobium_phage(33.33%)	33	NA	NA
WP_041166334.1|126553_127498_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|127572_128523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929607.1|128519_129929_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_076879597.1|130127_130877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807805.1|130878_131130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|131218_131800_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_010929605.1|131831_132452_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010929604.1|132613_134521_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_003816713.1|135713_136028_-	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|136121_137072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929603.1|137493_138675_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247832.1|139304_140576_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_029443770.1|140610_141669_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019248465.1|141772_142090_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010929599.1|142102_142684_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929598.1|142878_143715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929597.1|144138_145080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929596.1|145263_145683_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929595.1|145682_146909_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929584.1|147709_148660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929594.1|148753_149653_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|149732_150494_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|150490_151180_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|151204_151795_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|151800_152535_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_029443813.1|153766_155023_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_005012067.1|155065_156016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|156151_156766_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|156762_158010_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003815255.1|159179_160073_-	membrane protein	NA	NA	NA	NA	NA
WP_003815265.1|160200_160437_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815267.1|160408_161044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|161543_162494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	216823	283986	4116920	tRNA,transposase	Planktothrix_phage(37.5%)	59	NA	NA
WP_010931687.1|216823_218176_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_003816050.1|218292_219879_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931686.1|219898_220873_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931685.1|220869_221790_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931684.1|221816_222818_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	8.9e-15
WP_019248556.1|222814_223831_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_019248557.1|223888_225088_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003816037.1|225217_226141_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931682.1|226184_227228_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931681.1|227229_228045_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.4	6.1e-30
WP_010927255.1|228041_228923_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929556.1|228983_230432_-	catalase	NA	A0A2K9L0T1	Tupanvirus	40.8	3.2e-106
WP_153302799.1|230415_230568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|230554_231505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853477.1|232051_233290_-	CoA transferase	NA	NA	NA	NA	NA
WP_003819309.1|233371_234151_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931679.1|234147_235155_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003808010.1|235328_236015_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853488.1|236095_236857_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_010931677.1|236853_237678_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931676.1|237679_238648_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931675.1|238670_240083_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931674.1|240122_241277_-	CoA transferase	NA	NA	NA	NA	NA
WP_077274100.1|241266_242289_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929577.1|242177_243128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996063.1|243114_243291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815086.1|243310_244084_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003815084.1|244173_244983_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931673.1|244993_246070_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_010931672.1|249921_250569_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010927126.1|250780_251689_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003815073.1|251685_252357_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_003815070.1|252675_253692_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815068.1|253811_255002_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815066.1|255003_256104_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815064.1|256158_256899_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_010931671.1|257019_258042_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815061.1|258041_258509_+	membrane protein	NA	NA	NA	NA	NA
WP_010931670.1|258527_260054_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_010931669.1|260040_261498_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_003815055.1|261595_261784_+	DUF3460 family protein	NA	NA	NA	NA	NA
WP_003815053.1|261810_262698_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815051.1|262742_263585_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815049.1|263682_264030_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815047.1|264112_264856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820519.1|265096_265936_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_019247320.1|265938_266589_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003815038.1|266621_267383_+	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931666.1|267563_268814_+	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010931665.1|268810_271879_+	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003815032.1|271875_274983_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_023994937.1|274979_276473_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010929577.1|276469_277420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|277518_278469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|278567_279518_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815027.1|279618_280581_-	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010931663.1|280573_281440_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_010931662.1|281639_282866_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_014486111.1|283035_283986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	468797	543141	4116920	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|468797_469748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|469744_470935_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|471056_471821_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|471907_473011_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|473202_474219_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|474500_474989_+	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|476332_477013_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|477074_477926_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817654.1|477922_478798_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|478823_479717_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|479728_481618_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|481954_485728_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|485724_486675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302770.1|486661_486829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|486983_487676_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|488049_488550_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|488656_489577_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|489593_490070_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|490163_492014_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|492069_492828_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|492855_494328_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|494362_495142_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|495154_495988_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815975.1|495996_496770_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|496766_497831_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|497982_500610_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|500673_503295_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|504222_504681_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|504959_507203_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|507399_509424_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|509547_510510_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|510721_511861_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|511883_512849_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|513044_514235_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|514248_514494_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|514522_516544_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|516590_518198_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|518298_519468_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|522349_523300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|523323_524382_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|524456_524831_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|525385_526336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995443.1|526322_526463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929833.1|527892_528738_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|528825_529989_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|530407_531379_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|531417_532845_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|532964_533756_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|533874_536328_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_003816023.1|536422_537538_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929554.1|537534_538944_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|539349_539484_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|539579_539951_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|539947_540220_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|540268_541960_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|542190_543141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	687325	734174	4116920	transposase	Streptococcus_phage(25.0%)	40	NA	NA
WP_005013747.1|687325_688276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|688374_689325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|689456_689855_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|690265_690736_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|690824_691169_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|691268_692669_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|694457_694976_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|695086_695842_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|696037_697270_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|697262_698048_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|698114_699086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|699096_700074_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|700199_701372_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|701398_702427_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|702492_703686_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|705467_706418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|706516_707467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|707565_708471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|708646_708850_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|709360_709801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029443819.1|709830_710466_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929798.1|710575_712216_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|712212_713676_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|713706_717093_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|717234_717639_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|717782_718769_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|718755_719037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|719782_721015_-	dehydratase	NA	NA	NA	NA	NA
WP_077274093.1|721014_721488_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|721640_722603_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|722580_723834_-	CoA transferase	NA	NA	NA	NA	NA
WP_023995938.1|723777_723969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|723955_724906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003821340.1|724902_725565_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_010929831.1|725572_726532_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_010929830.1|726688_727360_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_023853155.1|727362_728328_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247670.1|728835_731964_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_010929827.1|732039_733107_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|733223_734174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	848472	962226	4116920	tRNA,terminase,protease,transposase,tail	uncultured_Caudovirales_phage(14.29%)	114	NA	NA
WP_005013747.1|848472_849423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|849898_850789_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|850785_851607_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|851805_852297_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|852315_853389_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|853435_854539_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|854614_855235_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|855255_855765_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|855819_856071_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|856134_857268_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|857275_857662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|857658_860178_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|860606_860945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|860941_861448_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|861509_862310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|862420_863362_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|863455_864991_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|866670_868521_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|868524_869358_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|869357_870299_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|870550_871546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|871663_873952_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|874258_875167_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|875221_876187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|876261_877923_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|877919_878705_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|878853_879804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|880502_880886_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|880943_881546_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|881563_881965_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|882098_882992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|882988_883570_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|884364_885099_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|885139_886189_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|886336_886915_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|887301_888279_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|888372_892767_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|892967_893816_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|893974_894787_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|894842_895793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|895779_895944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|895891_896692_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|896753_897137_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|897148_898582_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|898788_899118_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|899120_899789_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|900052_900973_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|901019_901232_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|901254_901677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|901693_902794_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|902890_904408_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|904483_905323_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|905344_906226_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|906307_907402_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|907695_908646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|908720_909662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|909760_910711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|910794_911154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|911535_912573_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|912889_914230_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|914239_914692_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|914788_915970_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_003814219.1|916029_917061_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|917101_917341_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|917410_919000_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|918999_919548_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|919628_920201_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|920219_921131_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|921204_922173_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|922295_923369_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|923373_925194_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|925270_926221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|926309_926645_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|926778_927429_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|927450_928869_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|928938_929694_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|929662_930421_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|930431_931313_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|931329_932037_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|932039_932798_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|933007_934750_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|934742_935267_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|935306_936101_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|936268_937342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|937440_938391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|938642_938855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|938920_939532_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|940011_940332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|940324_941023_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|941037_941259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|941276_942227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|942902_943352_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|943338_944616_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|944618_946037_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|946065_947121_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|947126_947369_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|947491_948094_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|948522_949473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|949490_950138_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|950147_950399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|950461_950944_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|950945_951146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|951145_951541_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|951537_951936_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|951932_952355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|952362_952863_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|953117_953636_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|953645_953975_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|953992_954283_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|954308_956921_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|956930_957290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|957357_957891_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|957887_958277_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|958269_962226_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	968392	1022322	4116920	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|968392_970123_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|970175_970604_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|970606_971287_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|971286_971745_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|971781_972756_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|972772_974089_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|974120_974618_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|974704_975394_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|975393_976443_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|976439_977234_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|977402_977753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|977728_978286_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|979210_979429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|979415_980366_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|982644_983733_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|983735_985178_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|985282_986428_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|986459_987257_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|987281_988841_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|988837_991210_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|991319_992423_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|992422_993115_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|993258_993960_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|993944_994322_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|995053_996004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|995990_996134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|996163_997036_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|997376_997595_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|997634_999014_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|999055_1000453_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|1000492_1002145_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|1002148_1003033_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|1003032_1003974_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|1004052_1005672_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|1005838_1006654_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|1006721_1007291_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1007291_1008242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|1008896_1009994_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|1010027_1011293_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|1011450_1012401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|1012644_1013235_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|1013250_1015695_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|1015814_1016786_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|1016917_1017442_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|1017401_1018352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|1018573_1020769_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|1020841_1021249_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|1021196_1021385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1021371_1022322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	1144911	1212887	4116920	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|1144911_1145928_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|1146124_1147108_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|1148706_1150095_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|1150125_1151115_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|1151225_1152458_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|1152739_1153540_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|1153562_1155794_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|1156581_1157028_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|1157049_1157796_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|1157939_1158917_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|1159550_1160162_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|1160155_1161373_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|1161513_1162464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|1162460_1163180_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|1163300_1165460_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|1165550_1165820_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|1165908_1166115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|1166113_1166641_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|1166659_1167439_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|1167606_1168623_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|1168695_1169187_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|1169197_1170913_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|1172076_1173027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|1173023_1174874_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|1175254_1175914_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|1176001_1176154_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|1176262_1176430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|1176441_1177122_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|1177403_1178120_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|1178134_1179436_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|1181580_1184469_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|1184692_1186045_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|1186073_1186595_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|1186591_1188046_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|1188080_1188329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|1188434_1189310_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|1189335_1190391_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|1190403_1191195_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|1191227_1192598_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|1193650_1193788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1193774_1194725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|1194777_1194999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|1195158_1195371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|1195490_1196609_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|1196705_1196921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|1197114_1197366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|1197478_1198429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|1198425_1198809_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|1198863_1200681_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|1200827_1201655_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|1201700_1202681_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|1202677_1202890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|1202886_1204068_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|1204231_1204966_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|1204967_1207580_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|1207715_1209629_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|1210244_1210655_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|1210752_1211838_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|1211936_1212887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	1236065	1306332	4116920	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|1236065_1237016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|1237096_1238008_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|1238068_1239214_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|1239233_1240148_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|1240219_1240969_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|1240968_1241898_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|1242141_1243968_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|1244050_1244692_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|1244881_1245916_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|1247752_1248817_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|1249614_1250523_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|1252010_1253285_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|1253438_1253819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|1253826_1254699_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|1255004_1255385_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|1255595_1256321_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1256416_1257367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1257471_1258521_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1258658_1259675_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1261183_1261756_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1261815_1262547_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1262598_1263516_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1264323_1267503_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1267499_1268882_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1268951_1269203_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1269348_1269999_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1270149_1272264_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1272339_1273191_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1273187_1273814_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1273810_1275565_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1275857_1278563_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1278575_1280237_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1280249_1282040_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1282261_1283437_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1283479_1284430_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1284528_1285269_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1285463_1287500_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1287517_1288528_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1288645_1289839_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1289868_1290642_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1290638_1291829_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1291854_1292793_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1292789_1295138_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1295292_1296000_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1296037_1297171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1297263_1297416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1297447_1297996_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1298014_1298500_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1298677_1299616_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1299618_1299936_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1299981_1300926_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1302606_1303257_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1303310_1303646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1303642_1304503_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1304519_1304801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1304874_1305138_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1305381_1306332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	1318550	1375932	4116920	holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1318550_1319567_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1320397_1321405_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1321401_1323045_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1323041_1323944_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1324069_1324543_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1324532_1325555_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1325551_1326979_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1327916_1328933_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1329265_1330201_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1330250_1332131_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1332197_1332542_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1332686_1333823_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1333819_1334893_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1335050_1336487_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1336577_1337219_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930525.1|1337554_1338571_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1338903_1341651_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1341717_1343139_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1343402_1344119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1344203_1344521_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1344561_1344975_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1344976_1345336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1345378_1346923_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1347006_1347837_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1347871_1349026_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1349068_1349941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1350057_1352346_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1353552_1354017_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1354043_1354994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1355361_1356138_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1356182_1357040_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1357061_1358078_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1358212_1359253_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1359447_1361529_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1361764_1363258_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1363488_1364283_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1364503_1365862_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1365858_1366701_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1366719_1368606_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1368843_1369476_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1369494_1370097_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1370100_1370262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1370248_1371199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1372001_1372802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1372845_1373832_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1373971_1374985_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1374981_1375932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	1411283	1476870	4116920	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1411283_1413080_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1413079_1414048_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1414117_1414963_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1415030_1415585_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1415631_1416582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1416680_1417313_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1417479_1419762_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1419916_1422613_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1422738_1423227_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1425637_1428508_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1428553_1429768_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1429997_1431425_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1431465_1432614_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1432626_1433385_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1433472_1434375_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1434371_1435322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1435451_1436435_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1436489_1437212_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1438691_1440047_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1440127_1442503_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1442667_1444743_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1444804_1445605_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1445706_1446669_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1446656_1447412_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1447519_1449157_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1449224_1449962_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1450064_1450640_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1450812_1451349_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1451351_1451696_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1451711_1452557_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1452595_1453975_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1454052_1454934_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1455032_1455983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1455979_1456390_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1456497_1457352_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1457344_1458307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1458352_1459477_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1459588_1460461_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1460585_1461365_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1461518_1462940_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1463374_1465072_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1465100_1465223_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1465298_1466240_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1466566_1467313_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1467320_1468247_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1468368_1469286_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1469325_1470279_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1470303_1470882_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1472555_1473164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1473241_1473595_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1473678_1474668_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1474870_1475821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1475919_1476870_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	1576006	1644494	4116920	transposase	Planktothrix_phage(33.33%)	60	NA	NA
WP_005012808.1|1576006_1576957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219856.1|1576943_1577081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930283.1|1577725_1578364_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1579253_1579700_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1579781_1580483_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1580483_1581251_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1581247_1582486_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1582485_1583412_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1583514_1584630_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1584645_1585596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740682.1|1585582_1585825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930287.1|1585949_1586531_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1586527_1587361_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1587571_1588885_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1589061_1589943_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1589962_1590814_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1590866_1591955_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1592065_1593193_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1593427_1594039_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1594137_1595088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1595309_1595687_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1595834_1596332_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1596328_1596856_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1596989_1597805_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1597817_1598999_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1599046_1599940_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1600066_1600537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1600662_1601490_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1601518_1602295_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_003811307.1|1602291_1602585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1602581_1603046_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_077274085.1|1603057_1603843_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1603868_1604369_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1604451_1605630_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1607257_1607593_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1607780_1609229_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1609286_1609631_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1609737_1610277_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1610369_1611320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068979.1|1611306_1611789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1612058_1612490_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1612671_1613076_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1614312_1614636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1614638_1615526_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1615558_1615984_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1616055_1616409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1616648_1617155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1617193_1618525_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1618584_1619400_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1619396_1620251_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1623313_1625857_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1627223_1628978_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1628974_1631095_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1631099_1633295_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1633291_1636633_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1639436_1640387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1640452_1640632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1640748_1641471_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1641490_1642636_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1643543_1644494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	1704985	1760473	4116920	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1704985_1705936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1707137_1707584_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1707576_1709052_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1709048_1709804_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1709796_1710807_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1710796_1712473_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1712785_1713118_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1713131_1713527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1713536_1713863_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1713859_1714186_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1714112_1715135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811825.1|1715131_1715512_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1715529_1715958_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1715965_1717339_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1717479_1717857_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1718119_1719427_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1719487_1720318_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1720314_1720803_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1720844_1722365_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1722408_1722885_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1723688_1726286_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1726315_1727137_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1727863_1728613_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_003811801.1|1728745_1729675_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1729772_1730489_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1730503_1731064_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010926572.1|1731101_1731995_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	2.0e-18
WP_010930351.1|1732014_1732872_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1732868_1734068_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1734107_1735442_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1735494_1737831_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1737956_1738520_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1738528_1739620_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1739691_1740147_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1740147_1740942_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1740938_1742120_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1742106_1742712_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1742708_1743482_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1743493_1744321_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1744482_1746846_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1746913_1747633_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1747756_1748182_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1748216_1749167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1749284_1750211_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1750276_1751434_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1751414_1751882_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1752029_1752980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1752996_1753431_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1753420_1753771_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1753967_1755122_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1755118_1756291_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1756338_1757232_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1757277_1757715_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1757774_1758464_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1758473_1759424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1759522_1760473_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	2053043	2101058	4116920	tRNA,transposase	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|2053043_2053994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2054092_2056693_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2056799_2057804_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2057912_2059253_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2059293_2060322_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2060517_2061063_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2061059_2061620_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2061718_2062669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2062706_2063294_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2063311_2063695_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2065054_2066347_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2066481_2067522_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010931363.1|2067619_2068636_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2068903_2069551_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2069676_2070435_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|2070509_2071199_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|2071216_2072101_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2072097_2072877_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|2072903_2073581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2073869_2074622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2074740_2076141_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2076164_2076563_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2076738_2076939_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2077077_2077806_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2077939_2079355_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2079358_2080222_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2080234_2080984_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2081166_2083182_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|2083163_2083712_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|2083788_2084508_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|2084606_2085557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2085655_2086606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2086754_2087093_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2087150_2087312_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2087343_2087544_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2087809_2090383_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|2090453_2093027_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2095553_2096042_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2096133_2097285_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2097338_2098160_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2098198_2099428_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2099556_2099997_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|2099941_2100121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2100107_2101058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	2162620	2221890	4116920	tRNA,protease,transposase	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|2162620_2163571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2163695_2164505_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|2164560_2164719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2164705_2165656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2166929_2168147_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2169203_2170106_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2170182_2171055_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2171185_2171554_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2171611_2172658_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2172853_2174110_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2174114_2175452_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2175601_2176558_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2176660_2177593_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2177708_2178029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|2178030_2178381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2178428_2180003_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2180055_2181000_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2181017_2181848_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2181840_2183475_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2183471_2184827_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2185733_2187311_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2187314_2188589_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2188686_2189061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2190776_2191910_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2191947_2192553_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2192549_2193368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2193439_2196064_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2196050_2196305_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2196371_2196953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2197256_2197517_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2197682_2198306_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2198305_2199079_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2199075_2200284_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2200309_2200783_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2200856_2201807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2201905_2202856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2202954_2204304_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2205069_2205825_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2205917_2208800_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2209122_2209548_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2209575_2210724_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2210720_2211227_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2211233_2212529_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|2212569_2213874_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2213875_2214514_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2214516_2215677_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2215703_2217059_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2217062_2218133_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2218271_2218508_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2218595_2219702_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2219667_2220972_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2220990_2221890_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	2232130	2276453	4116920	transposase	Staphylococcus_phage(25.0%)	46	NA	NA
WP_005013747.1|2232130_2233081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2233179_2234130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|2234116_2234317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|2234329_2235415_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2235430_2236192_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|2236188_2237112_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|2237210_2237735_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2237743_2238487_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2238582_2238822_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2238835_2238988_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2239073_2240564_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2240655_2241594_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2241590_2241767_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2241769_2242432_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2244053_2244197_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2244193_2245168_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|2245204_2245348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2245334_2246285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2246281_2247556_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|2247653_2248853_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2248849_2249503_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2249499_2250936_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2250923_2251283_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|2252255_2253206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2254251_2256117_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2256374_2257895_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2257982_2258633_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2259581_2260877_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2260898_2261783_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2261881_2262757_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2262746_2263103_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2263176_2264208_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2264337_2264517_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2264614_2265139_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2265149_2265986_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2266098_2266470_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2266466_2267018_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2267033_2268725_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2268773_2269454_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2269701_2270166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2270335_2271265_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2271277_2271925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2271998_2273816_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2273899_2274850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2275354_2275516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2275502_2276453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	2306226	2370595	4116920	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2306226_2307177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2307163_2307355_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2307398_2308349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2308447_2309413_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2309550_2310450_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2313044_2314532_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2314542_2315739_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2315811_2317131_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2317127_2318003_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2318033_2319203_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2319199_2319514_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2319535_2320258_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2320257_2321076_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2321080_2321608_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2321613_2322879_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2323228_2324368_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2324445_2325318_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2326188_2327139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2327098_2327734_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2328093_2329416_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2329644_2330556_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2331980_2332553_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2332592_2334422_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2334384_2335443_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2335480_2335942_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2336026_2336773_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2338263_2341494_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2341560_2342892_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2343144_2343519_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2343621_2344800_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2344810_2345401_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2345511_2346318_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2346343_2347138_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2348138_2349113_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2349271_2349784_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2349940_2350912_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2352656_2353463_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2353459_2354596_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2354711_2355476_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2355589_2356360_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2356444_2357656_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2357704_2358079_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2358179_2359442_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2359438_2360296_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2360468_2361470_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2361921_2362872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2364387_2365587_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2365955_2366192_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2366255_2366423_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2366536_2368432_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2368595_2369546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2369644_2370595_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	2557063	2618411	4116920	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2557063_2558014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2558130_2558850_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2559022_2560009_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2560009_2560492_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2560495_2561779_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2561775_2562714_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2562710_2564420_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2564429_2565677_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2567287_2568577_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2569714_2570488_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2571149_2571893_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2571967_2572708_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2572903_2573740_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2573790_2574561_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2574610_2575663_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2575659_2576286_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2576282_2577329_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2577495_2578512_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2578610_2579561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2582301_2583591_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2583709_2584180_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2584190_2585399_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2585545_2586010_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2586033_2586984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2587968_2588742_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2588738_2589737_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2589821_2590598_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2590753_2592421_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2592738_2593863_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2593989_2594613_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2594609_2596511_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2596559_2597354_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2597366_2598368_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2598364_2598871_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_065518122.1|2598863_2599712_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2599809_2600352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2600395_2601346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2601501_2601828_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2601824_2602109_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2602105_2602585_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2602581_2604210_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2604206_2604551_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2604550_2607484_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2608642_2609593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2609691_2609988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2610094_2611012_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2611016_2611730_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2611743_2612715_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2614434_2614815_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2614818_2616006_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2616444_2617167_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2617460_2618411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	2639202	2710356	4116920	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2639202_2640153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2640705_2642331_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2642380_2643415_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2643417_2644764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2644760_2646275_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2646265_2647276_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2647749_2648691_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2648699_2649668_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2651207_2652176_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2652353_2653343_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2653389_2654148_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2654337_2655075_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2655025_2655187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2655173_2656124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2656308_2657091_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2657084_2657786_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2658025_2658628_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2659812_2659968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2659954_2660905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2660901_2662458_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2662450_2663224_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2663282_2664233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2664314_2665490_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2665503_2667561_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2667557_2668583_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2668594_2669884_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2669906_2671004_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2671000_2671891_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2671887_2673972_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2674003_2675173_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2675214_2675955_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2675954_2676725_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930465.1|2677580_2678366_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2678392_2680477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2680644_2682600_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2682923_2683424_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2683522_2685049_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2685186_2686074_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2686088_2687042_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2687093_2689184_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2689199_2689586_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2692279_2693083_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2694376_2695279_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2695343_2696120_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2696441_2697491_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2697614_2699285_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2699289_2700084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2700182_2701133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2701152_2702058_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2702135_2702834_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2702993_2703938_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2703947_2705438_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2705434_2706502_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2706565_2707978_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2708163_2709384_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2709405_2710356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	2795605	2846777	4116920	tRNA,transposase	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2795605_2796556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2796654_2797425_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2797421_2798093_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2798089_2798731_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2798743_2799664_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2799824_2800985_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2801026_2801977_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2802575_2802800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2802964_2804659_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2804780_2805050_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2805165_2805564_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2805574_2806531_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2806667_2807213_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2807233_2809183_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2809570_2810347_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2810352_2810745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2811166_2812117_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2812113_2813211_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2813242_2814193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2815974_2817216_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2817227_2818001_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2818027_2818978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2819076_2819859_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2819947_2821174_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2821899_2823285_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2823303_2823909_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2823905_2825762_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2825758_2826559_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2826573_2827767_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2827834_2828809_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2828931_2830155_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2830265_2832470_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2832764_2833424_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2833431_2833638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2833976_2834732_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2834747_2834909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2835002_2835518_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2835790_2836108_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2836295_2836544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2836822_2838178_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2838224_2839604_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2839666_2840299_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2840298_2842659_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2842700_2843660_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2843646_2844333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2844329_2844662_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2844777_2845728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2845826_2846777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	2945072	2985741	4116920	tRNA,transposase	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2945072_2946023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2946133_2946316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2946415_2947012_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2947195_2948287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2948786_2949197_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2949255_2949597_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2949602_2952020_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2952032_2953055_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2953129_2953489_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2953504_2953702_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2954037_2954988_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2954974_2955136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2955182_2955632_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2955628_2956579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120812.1|2956565_2956712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2956689_2958138_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2958252_2958534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2958486_2958651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2958637_2959588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2959832_2960546_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2960668_2960896_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2961190_2961829_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2961901_2962972_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2962968_2963919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2964334_2964859_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2964862_2965132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2965330_2966392_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2966475_2968110_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2968111_2968915_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2968943_2969903_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2969906_2971421_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2971457_2972462_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2972893_2973364_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2973399_2974011_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2974041_2974665_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2974745_2976278_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2976312_2977554_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2977597_2978629_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2978625_2979795_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2979788_2980469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2980630_2981473_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2981635_2982607_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2982778_2983657_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2983679_2984750_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2984790_2985741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	3041206	3114076	4116920	tRNA,transposase	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|3041206_3041623_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|3041733_3042366_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|3042394_3042838_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|3042859_3043951_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|3044005_3044806_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|3044941_3045562_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|3045701_3046175_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3047314_3048265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|3048261_3055923_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|3056163_3060210_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|3060522_3061104_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|3061100_3062399_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|3062478_3063507_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|3063430_3063781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|3063767_3064718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3064714_3065665_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|3065981_3066587_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|3066640_3067954_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|3068028_3068499_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|3068498_3069287_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|3069297_3070950_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|3071037_3071988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|3073149_3073656_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|3073652_3074417_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|3074432_3074717_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|3074781_3075771_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|3075942_3076872_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|3076843_3077530_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|3077563_3078109_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|3078153_3079419_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|3079415_3080318_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|3081499_3082444_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|3082538_3084056_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|3084097_3085726_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|3085833_3086715_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|3089827_3090202_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|3090226_3090565_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|3090608_3092243_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|3092281_3093628_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|3093735_3095157_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|3095226_3095811_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|3095913_3096864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|3096998_3098105_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|3098115_3099213_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|3099357_3100563_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|3100569_3101091_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|3101087_3101579_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|3101575_3101827_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|3101807_3102293_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|3102428_3105890_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|3105886_3106792_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|3106801_3107233_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|3107479_3107983_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|3107994_3109461_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|3109535_3110411_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|3110407_3111415_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|3111882_3112188_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|3112278_3112869_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|3113059_3114076_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	3117219	3184030	4116920	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|3117219_3118170_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3118268_3119219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|3119215_3120010_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|3120041_3120746_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|3120820_3121621_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|3121617_3122025_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|3122021_3122663_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|3122655_3124677_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|3125916_3127248_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|3127244_3128195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|3129901_3130168_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|3130875_3131214_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|3135767_3136370_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|3136466_3137756_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|3137813_3138545_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|3138541_3139345_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|3139341_3140430_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|3140426_3141356_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|3141504_3142650_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|3142671_3143622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|3143952_3147774_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|3147930_3148599_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|3148603_3150277_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|3150295_3151615_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|3151619_3153971_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|3153990_3156159_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|3156155_3161345_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|3161434_3161749_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|3161976_3162222_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|3162316_3162835_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|3162934_3164140_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|3164255_3165653_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|3165769_3166348_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|3166420_3167812_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|3167979_3168930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|3169210_3169831_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|3169827_3170241_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|3170237_3171281_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|3171336_3171525_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|3171534_3172299_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|3172389_3173046_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3173137_3173896_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3173921_3175523_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3175723_3176728_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3176828_3177092_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|3177209_3177986_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3178576_3179527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3181910_3183023_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|3183079_3184030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	3214416	3308441	4116920	transposase	Bacillus_virus(27.27%)	90	NA	NA
WP_005012067.1|3214416_3215367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|3215353_3215599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|3215487_3216384_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3218661_3220887_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3221051_3222140_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3222096_3222750_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3222797_3223595_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3224114_3225065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|3225145_3226294_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3226350_3227301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|3227287_3227506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|3227399_3227705_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3227733_3228168_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3228169_3229414_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3229410_3230121_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3230135_3231047_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929584.1|3231416_3232367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|3232458_3232863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3232859_3233318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|3233324_3234233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|3234229_3235096_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3235082_3235910_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3235920_3237048_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|3238125_3239364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3239405_3240668_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3240674_3241427_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3241478_3241664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3241939_3242404_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3242435_3243095_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3243239_3245348_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3245344_3246295_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3246398_3247019_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|3247122_3247863_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3248997_3250122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3250167_3250536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3250777_3251728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3252763_3253306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|3253498_3253705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3253691_3254642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3254638_3255604_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3255673_3256510_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|3256986_3258132_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3258193_3259144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3259336_3260119_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3260132_3260882_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3260909_3262256_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3262281_3263211_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3263326_3264232_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3264249_3265449_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3265521_3266214_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3266262_3268689_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3268733_3269684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3269900_3270269_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3270555_3271482_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3271525_3272536_+	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3272532_3272967_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3274092_3274881_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3274890_3275673_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3275676_3276768_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3276873_3278349_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3278490_3279039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3279054_3279516_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3279616_3280606_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3280904_3281606_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3281644_3283018_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3283056_3284343_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931177.1|3285229_3286132_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3286079_3287300_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3287296_3287806_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3287795_3288491_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3288561_3289431_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905696.1|3289780_3290731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486089.1|3291591_3292281_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_003818691.1|3293057_3294020_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486091.1|3294023_3294884_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808978.1|3294877_3295270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486092.1|3295300_3296473_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_014486094.1|3297924_3298722_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486095.1|3298755_3299535_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486096.1|3299563_3300436_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003818698.1|3300457_3301207_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486097.1|3301214_3302072_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247597.1|3302112_3302676_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247598.1|3302706_3303003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486098.1|3303083_3303887_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818702.1|3303907_3305104_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247599.1|3305106_3306108_-	amidase	NA	NA	NA	NA	NA
WP_019249309.1|3306460_3306631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486100.1|3306725_3307388_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3307490_3308441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	3647522	3701263	4116920	transposase	Staphylococcus_phage(33.33%)	50	NA	NA
WP_023995489.1|3647522_3648473_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3648877_3649522_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3649546_3650131_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3650231_3650849_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3650851_3652567_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3652563_3652872_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3652888_3653524_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3653550_3653853_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3653953_3654808_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3654995_3655220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3655389_3655662_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3656079_3656487_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3656856_3657651_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3657751_3658987_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3659055_3660072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3660068_3661460_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3661456_3662653_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3662649_3664188_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3664184_3665444_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3667384_3668335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3668321_3668498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3669101_3670196_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3670188_3671523_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3671476_3672160_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3672185_3673349_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3673345_3674347_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3674346_3675219_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3675215_3675965_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3675961_3676753_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3676749_3677889_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3678197_3678950_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3678983_3679766_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3679769_3680159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3681298_3682162_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3682197_3683286_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3683282_3684233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3684219_3684633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3684586_3687565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3688491_3689370_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3691318_3692269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3692265_3692733_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3692775_3693546_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3693566_3694367_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3694377_3695787_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3695881_3696667_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3696906_3697923_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3698030_3698423_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3698560_3699241_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3699245_3700244_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3700312_3701263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	3707418	3766719	4116920	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3707418_3709182_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3709293_3710172_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3710284_3711100_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3711103_3711355_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3711439_3712456_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3712786_3713008_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3715368_3716286_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3716783_3717992_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3718071_3719643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3719760_3720696_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3720884_3721829_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3721897_3722113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3722396_3728114_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3728119_3729247_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3729302_3729929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3730200_3731217_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3731312_3732023_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3732019_3733009_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3733140_3734736_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3734738_3735476_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3735631_3736504_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3736772_3737993_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3737989_3738649_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3738720_3739353_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3739382_3739901_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3739911_3741021_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3741067_3741922_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3741923_3742826_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3744048_3744999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3746756_3747746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3747921_3748710_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3748706_3749738_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3749756_3750320_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3750375_3751896_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3752159_3752864_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3752871_3753609_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3753714_3754089_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3754131_3755421_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3755417_3756587_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3756583_3757423_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3757482_3758418_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3758430_3759381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3759479_3760442_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3760473_3760833_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3760957_3761860_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3761861_3763634_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3763668_3764445_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3765768_3766719_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	3781657	3840779	4116920	tRNA,transposase	Planktothrix_phage(12.5%)	48	NA	NA
WP_005012808.1|3781657_3782608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3782736_3783870_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3783913_3784819_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3784821_3786522_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3786518_3787439_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3787446_3788424_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3788482_3789517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3791491_3791728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3791854_3792718_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3792806_3793628_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3793707_3794445_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3794441_3795434_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3795547_3796210_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3796254_3797403_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3799726_3800677_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3801017_3801968_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3802066_3803017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3803313_3803811_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3803853_3805629_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3805675_3806503_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3806509_3807244_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3808413_3809208_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3809497_3810088_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3810121_3811450_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3811524_3812670_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3812781_3813780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3813742_3814177_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3815693_3816578_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3816574_3817780_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3817776_3818637_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3818749_3820540_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3820580_3821246_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3821246_3821555_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3821720_3823007_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3824440_3825391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3825489_3826440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3828391_3829606_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3829711_3830701_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3830697_3831306_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3831318_3831948_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3831944_3832565_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3832596_3833388_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3834230_3834695_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3834713_3835640_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3835693_3836980_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3837910_3838783_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3838779_3839730_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3839828_3840779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	3850579	3921920	4116920	tRNA,transposase	Paramecium_bursaria_Chlorella_virus(20.0%)	59	NA	NA
WP_010929957.1|3850579_3851854_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3852576_3853527_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3853625_3854576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929955.1|3854674_3857050_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929954.1|3857069_3857906_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010929953.1|3857902_3858700_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929952.1|3858696_3860886_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929951.1|3860937_3861924_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929950.1|3862005_3863808_-	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929949.1|3864065_3866183_+	crotonase	NA	NA	NA	NA	NA
WP_076879537.1|3866179_3867397_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929947.1|3867418_3867907_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929946.1|3868056_3869889_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929945.1|3870086_3871067_-	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929944.1|3871123_3872143_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815697.1|3872206_3873100_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929943.1|3873498_3874278_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929942.1|3874277_3876419_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929941.1|3876566_3877511_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929940.1|3877594_3878578_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003815690.1|3878942_3880217_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA	NA
WP_010929939.1|3880247_3880676_+	RidA family protein	NA	NA	NA	NA	NA
WP_003815682.1|3880686_3881361_+	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929938.1|3881353_3882526_+	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_010929937.1|3882658_3883678_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929936.1|3883858_3885049_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|3885062_3886193_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929934.1|3886236_3887958_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_003815672.1|3888076_3889039_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815671.1|3889145_3890117_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247835.1|3890735_3891404_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815668.1|3891400_3891808_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010929577.1|3891804_3892755_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3895199_3895934_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3896343_3896523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3896713_3898027_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3898042_3899554_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3899550_3900756_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3900951_3901929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446199.1|3902021_3902516_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814720.1|3902645_3903704_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_010927086.1|3903700_3905320_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_077274092.1|3905279_3905588_-	GtrA family protein	NA	NA	NA	NA	NA
WP_010929784.1|3905507_3906611_+	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_010929783.1|3906607_3907063_+	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_003814709.1|3907068_3907992_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929782.1|3908081_3908741_-	LysE family translocator	NA	NA	NA	NA	NA
WP_047122777.1|3908737_3909652_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929577.1|3909740_3910691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879611.1|3910769_3911747_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|3912207_3912807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807867.1|3912875_3913868_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486054.1|3913917_3915507_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_014486053.1|3915547_3916444_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486052.1|3916440_3918147_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_003819219.1|3918251_3919493_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486051.1|3919489_3920260_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_014486050.1|3920308_3921010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486049.1|3920936_3921920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP015769	Bordetella pertussis strain VA-145, complete genome	4116920	3991742	4107412	4116920	tRNA,protease,transposase	Bacillus_phage(12.5%)	105	NA	NA
WP_005013747.1|3991742_3992693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302769.1|3992679_3992829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814960.1|3992815_3993544_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_023852939.1|3993550_3994819_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3994815_3995649_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3995685_3996426_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3996545_3997721_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3997717_3998671_-	aspartate carbamoyltransferase	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3998684_3999086_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_019248876.1|3999078_3999756_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3999771_3999936_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|4000052_4000901_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|4000897_4001551_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|4001567_4002851_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|4003090_4004716_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|4004809_4005211_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|4005235_4005670_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|4005671_4007321_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|4007361_4008531_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|4008533_4009397_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|4012760_4013465_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|4013458_4014253_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|4014249_4015215_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|4015218_4016139_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|4016235_4017399_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|4017621_4018512_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|4018515_4019019_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|4019061_4020060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|4020056_4021007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|4021095_4021383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154299516.1|4021429_4021588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|4021574_4022525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|4022584_4023145_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|4024647_4025529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|4025642_4026845_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|4026973_4028833_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|4028910_4029720_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|4029790_4030792_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|4030823_4031684_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|4031883_4032888_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|4032884_4034471_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|4034479_4035406_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|4035428_4036055_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|4036153_4037104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|4037100_4038237_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|4038290_4039067_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|4039091_4039550_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|4039689_4040331_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|4040395_4041778_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|4041797_4042652_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|4042810_4043422_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|4043431_4043881_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|4044399_4044540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|4044547_4044709_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077068974.1|4044784_4045000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|4044986_4045937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|4046980_4047259_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_085964336.1|4048401_4048977_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929715.1|4049012_4050692_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|4050688_4052440_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|4052436_4052562_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|4052575_4053730_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010929713.1|4053745_4055365_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|4055448_4055994_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|4056553_4057504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|4058234_4059215_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|4059228_4060353_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|4060360_4062115_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|4062221_4063121_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|4063185_4064169_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|4064304_4065285_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|4065301_4066693_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|4066844_4067381_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|4067311_4068697_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|4068839_4069478_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|4069564_4071454_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|4071450_4072392_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|4072497_4073547_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|4073799_4074501_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|4074497_4075196_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|4075196_4076552_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|4076548_4077040_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|4077058_4078015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|4079425_4081528_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|4081698_4082742_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|4082785_4083529_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|4084550_4084961_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|4085910_4086708_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_153302767.1|4086646_4086820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930742.1|4086806_4087757_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|4087753_4088704_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4088790_4089741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|4089855_4090857_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|4090947_4091514_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|4091832_4093746_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|4093787_4095218_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|4095330_4096743_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|4096759_4097455_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_127013037.1|4097486_4097687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|4097673_4098624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|4098648_4099548_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|4099702_4100251_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|4100289_4101009_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|4101080_4104023_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033446404.1|4104616_4107412_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
