assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001687105.1_ASM168710v1	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	1	37151-37310	1	PILER-CR	no			Orphan	CTGTCCCCGCGGGGACAC	18	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,cas7,cas8c,cas5	NA,NA	NA|637aa|up_9|NZ_CP014600.1_22826_24737_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|293aa|up_8|NZ_CP014600.1_25117_25996_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|436aa|up_7|NZ_CP014600.1_25998_27306_+	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional	NA|560aa|up_6|NZ_CP014600.1_27345_29025_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|506aa|up_5|NZ_CP014600.1_29488_31006_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|534aa|up_4|NZ_CP014600.1_31239_32841_+	PRK08238, PRK08238, UbiA family prenyltransferase	NA|151aa|up_3|NZ_CP014600.1_32846_33299_+	pfam04138, GtrA, GtrA-like protein	NA|464aa|up_2|NZ_CP014600.1_33295_34687_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|247aa|up_1|NZ_CP014600.1_34683_35424_+	PRK07102, PRK07102, SDR family oxidoreductase	NA|438aa|up_0|NZ_CP014600.1_35483_36797_+	pfam09594, GT87, Glycosyltransferase family 87	NA|370aa|down_0|NZ_CP014600.1_37588_38698_-	cd16405, RepB_like_N, plasmid segregation replication protein B like protein, N-terminal domain	NA|435aa|down_1|NZ_CP014600.1_38694_39999_-	TIGR03453, partition_RepA, plasmid partitioning protein RepA	NA|228aa|down_2|NZ_CP014600.1_40809_41493_+	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|703aa|down_3|NZ_CP014600.1_41673_43782_+	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	NA|288aa|down_4|NZ_CP014600.1_43994_44858_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|635aa|down_5|NZ_CP014600.1_44873_46778_+	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|297aa|down_6|NZ_CP014600.1_46813_47704_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|144aa|down_7|NZ_CP014600.1_47725_48157_+	COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]	NA|276aa|down_8|NZ_CP014600.1_48161_48989_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|340aa|down_9|NZ_CP014600.1_49026_50046_+	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold
GCF_001687105.1_ASM168710v1	NZ_CP014595	Yangia sp. CCB-MM3 chromosome 1, complete sequence	1	1711624-1711855	1	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh	Orphan	GGGCAAGGTCACCTATCCCGACGG	24	0	0	NA	NA	NA	3	3	Orphan	WYL,csa3,cas3,DEDDh,cas7,cas8c,cas5	NA|332aa|up_5|NZ_CP014595.1_1705732_1706728_-,NA|70aa|up_4|NZ_CP014595.1_1706739_1706949_-,NA	NA|189aa|up_9|NZ_CP014595.1_1701237_1701804_+	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|410aa|up_8|NZ_CP014595.1_1701800_1703030_+	pfam10011, DUF2254, Predicted membrane protein (DUF2254)	NA|445aa|up_7|NZ_CP014595.1_1703271_1704606_-	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional	NA|316aa|up_6|NZ_CP014595.1_1704706_1705654_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|332aa|up_5|NZ_CP014595.1_1705732_1706728_-	NA	NA|70aa|up_4|NZ_CP014595.1_1706739_1706949_-	NA	NA|315aa|up_3|NZ_CP014595.1_1707130_1708075_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|184aa|up_2|NZ_CP014595.1_1708102_1708654_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|134aa|up_1|NZ_CP014595.1_1708850_1709252_+	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|553aa|up_0|NZ_CP014595.1_1709281_1710940_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|72aa|down_0|NZ_CP014595.1_1712718_1712934_+	pfam11160, DUF2945, Protein of unknown function (DUF2945)	NA|510aa|down_1|NZ_CP014595.1_1713049_1714579_-	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]	NA|226aa|down_2|NZ_CP014595.1_1714572_1715250_-	PRK09009, PRK09009, SDR family oxidoreductase	NA|275aa|down_3|NZ_CP014595.1_1715290_1716115_-	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain	NA|238aa|down_4|NZ_CP014595.1_1716114_1716828_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|328aa|down_5|NZ_CP014595.1_1717091_1718075_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|422aa|down_6|NZ_CP014595.1_1718141_1719407_+	COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]	NA|288aa|down_7|NZ_CP014595.1_1719523_1720387_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|280aa|down_8|NZ_CP014595.1_1720390_1721230_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|213aa|down_9|NZ_CP014595.1_1721229_1721868_+	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism]
GCF_001687105.1_ASM168710v1	NZ_CP014595	Yangia sp. CCB-MM3 chromosome 1, complete sequence	2	1711969-1712062	2	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh	Orphan	GGGCAAGGTCACCTATCCCGACGG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,cas3,DEDDh,cas7,cas8c,cas5	NA|332aa|up_5|NZ_CP014595.1_1705732_1706728_-,NA|70aa|up_4|NZ_CP014595.1_1706739_1706949_-,NA	NA|189aa|up_9|NZ_CP014595.1_1701237_1701804_+	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|410aa|up_8|NZ_CP014595.1_1701800_1703030_+	pfam10011, DUF2254, Predicted membrane protein (DUF2254)	NA|445aa|up_7|NZ_CP014595.1_1703271_1704606_-	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional	NA|316aa|up_6|NZ_CP014595.1_1704706_1705654_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|332aa|up_5|NZ_CP014595.1_1705732_1706728_-	NA	NA|70aa|up_4|NZ_CP014595.1_1706739_1706949_-	NA	NA|315aa|up_3|NZ_CP014595.1_1707130_1708075_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|184aa|up_2|NZ_CP014595.1_1708102_1708654_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|134aa|up_1|NZ_CP014595.1_1708850_1709252_+	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|553aa|up_0|NZ_CP014595.1_1709281_1710940_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|72aa|down_0|NZ_CP014595.1_1712718_1712934_+	pfam11160, DUF2945, Protein of unknown function (DUF2945)	NA|510aa|down_1|NZ_CP014595.1_1713049_1714579_-	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]	NA|226aa|down_2|NZ_CP014595.1_1714572_1715250_-	PRK09009, PRK09009, SDR family oxidoreductase	NA|275aa|down_3|NZ_CP014595.1_1715290_1716115_-	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain	NA|238aa|down_4|NZ_CP014595.1_1716114_1716828_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|328aa|down_5|NZ_CP014595.1_1717091_1718075_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|422aa|down_6|NZ_CP014595.1_1718141_1719407_+	COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]	NA|288aa|down_7|NZ_CP014595.1_1719523_1720387_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|280aa|down_8|NZ_CP014595.1_1720390_1721230_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|213aa|down_9|NZ_CP014595.1_1721229_1721868_+	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism]
GCF_001687105.1_ASM168710v1	NZ_CP014595	Yangia sp. CCB-MM3 chromosome 1, complete sequence	3	1712176-1712337	3	CRISPRCasFinder	no		WYL,csa3,cas3,DEDDh	Orphan	GGGCAAGGTCACCTATCCCGACGG	24	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,cas3,DEDDh,cas7,cas8c,cas5	NA|332aa|up_5|NZ_CP014595.1_1705732_1706728_-,NA|70aa|up_4|NZ_CP014595.1_1706739_1706949_-,NA	NA|189aa|up_9|NZ_CP014595.1_1701237_1701804_+	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family	NA|410aa|up_8|NZ_CP014595.1_1701800_1703030_+	pfam10011, DUF2254, Predicted membrane protein (DUF2254)	NA|445aa|up_7|NZ_CP014595.1_1703271_1704606_-	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional	NA|316aa|up_6|NZ_CP014595.1_1704706_1705654_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|332aa|up_5|NZ_CP014595.1_1705732_1706728_-	NA	NA|70aa|up_4|NZ_CP014595.1_1706739_1706949_-	NA	NA|315aa|up_3|NZ_CP014595.1_1707130_1708075_+	cd07720, OPHC2-like_MBL-fold, Pseudomonas pseudoalcaligenes organophosphorus hydrolase C2, and related proteins; MBL-fold metallo hydrolase domain	NA|184aa|up_2|NZ_CP014595.1_1708102_1708654_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|134aa|up_1|NZ_CP014595.1_1708850_1709252_+	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein	NA|553aa|up_0|NZ_CP014595.1_1709281_1710940_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|72aa|down_0|NZ_CP014595.1_1712718_1712934_+	pfam11160, DUF2945, Protein of unknown function (DUF2945)	NA|510aa|down_1|NZ_CP014595.1_1713049_1714579_-	COG3046, COG3046, Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]	NA|226aa|down_2|NZ_CP014595.1_1714572_1715250_-	PRK09009, PRK09009, SDR family oxidoreductase	NA|275aa|down_3|NZ_CP014595.1_1715290_1716115_-	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain	NA|238aa|down_4|NZ_CP014595.1_1716114_1716828_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|328aa|down_5|NZ_CP014595.1_1717091_1718075_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|422aa|down_6|NZ_CP014595.1_1718141_1719407_+	COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]	NA|288aa|down_7|NZ_CP014595.1_1719523_1720387_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|280aa|down_8|NZ_CP014595.1_1720390_1721230_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|213aa|down_9|NZ_CP014595.1_1721229_1721868_+	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism]
GCF_001687105.1_ASM168710v1	NZ_CP014595	Yangia sp. CCB-MM3 chromosome 1, complete sequence	4	2409244-2409599	1	PILER-CR	no		WYL,csa3,cas3,DEDDh	Orphan	GGTGCGGCGATCTCAGGGAGGAGGAGAGAGACCGCCGCTGTATCG	45	0	0	NA	NA	NA	3	3	Orphan	WYL,csa3,cas3,DEDDh,cas7,cas8c,cas5	NA,NA|233aa|down_7|NZ_CP014595.1_2417188_2417887_+	NA|313aa|up_9|NZ_CP014595.1_2393638_2394577_+	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|297aa|up_8|NZ_CP014595.1_2394824_2395715_+	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed	NA|298aa|up_7|NZ_CP014595.1_2395732_2396626_+	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane]	NA|444aa|up_6|NZ_CP014595.1_2396625_2397957_+	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|567aa|up_5|NZ_CP014595.1_2398374_2400075_+	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|307aa|up_4|NZ_CP014595.1_2400342_2401263_+	PRK13186, lpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA|285aa|up_3|NZ_CP014595.1_2401376_2402231_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|551aa|up_2|NZ_CP014595.1_2402287_2403940_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|1027aa|up_1|NZ_CP014595.1_2404161_2407242_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|522aa|up_0|NZ_CP014595.1_2407389_2408955_-	pfam00685, Sulfotransfer_1, Sulfotransferase domain	NA|68aa|down_0|NZ_CP014595.1_2409758_2409962_-	pfam06568, DUF1127, Domain of unknown function (DUF1127)	NA|355aa|down_1|NZ_CP014595.1_2410210_2411275_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|374aa|down_2|NZ_CP014595.1_2411400_2412522_-	PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated	NA|220aa|down_3|NZ_CP014595.1_2412518_2413178_-	PRK00698, tmk, thymidylate kinase; Validated	NA|400aa|down_4|NZ_CP014595.1_2413174_2414374_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|313aa|down_5|NZ_CP014595.1_2414421_2415360_-	pfam05036, SPOR, Sporulation related domain	NA|396aa|down_6|NZ_CP014595.1_2416001_2417189_+	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|233aa|down_7|NZ_CP014595.1_2417188_2417887_+	NA	NA|69aa|down_8|NZ_CP014595.1_2417929_2418136_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|137aa|down_9|NZ_CP014595.1_2418145_2418556_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]
GCF_001687105.1_ASM168710v1	NZ_CP014597	Yangia sp. CCB-MM3 plasmid unnamed1, complete sequence	1	132627-132797	1	CRT	no		cas7,cas8c,cas5,DEDDh	Orphan	CTCCTCCAATGTTGACACC	19	0	0	NA	NA	NA	3	3	Orphan	WYL,csa3,cas3,DEDDh,cas7,cas8c,cas5	NA|120aa|up_8|NZ_CP014597.1_121057_121417_+,NA|116aa|up_7|NZ_CP014597.1_121422_121770_+,NA|942aa|up_6|NZ_CP014597.1_121791_124617_-,NA|250aa|up_5|NZ_CP014597.1_124682_125432_-,NA|219aa|up_2|NZ_CP014597.1_129048_129705_+,NA|156aa|up_1|NZ_CP014597.1_129743_130211_-,NA|384aa|down_0|NZ_CP014597.1_132947_134099_+,NA|310aa|down_1|NZ_CP014597.1_134283_135213_+,NA|189aa|down_9|NZ_CP014597.1_142356_142923_-	NA|226aa|up_9|NZ_CP014597.1_120053_120731_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|120aa|up_8|NZ_CP014597.1_121057_121417_+	NA	NA|116aa|up_7|NZ_CP014597.1_121422_121770_+	NA	NA|942aa|up_6|NZ_CP014597.1_121791_124617_-	NA	NA|250aa|up_5|NZ_CP014597.1_124682_125432_-	NA	NA|305aa|up_4|NZ_CP014597.1_126078_126993_+	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|466aa|up_3|NZ_CP014597.1_127571_128969_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|219aa|up_2|NZ_CP014597.1_129048_129705_+	NA	NA|156aa|up_1|NZ_CP014597.1_129743_130211_-	NA	NA|320aa|up_0|NZ_CP014597.1_130339_131299_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|384aa|down_0|NZ_CP014597.1_132947_134099_+	NA	NA|310aa|down_1|NZ_CP014597.1_134283_135213_+	NA	NA|220aa|down_2|NZ_CP014597.1_136076_136736_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|379aa|down_3|NZ_CP014597.1_137123_138260_-	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|337aa|down_4|NZ_CP014597.1_138256_139267_-	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|106aa|down_5|NZ_CP014597.1_139263_139581_-	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains	NA|118aa|down_6|NZ_CP014597.1_139675_140029_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|292aa|down_7|NZ_CP014597.1_140030_140906_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|123aa|down_8|NZ_CP014597.1_141426_141795_-	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators	NA|189aa|down_9|NZ_CP014597.1_142356_142923_-	NA
