assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001688645.2_ASM168864v2	NZ_CP015407	Bifidobacterium animalis subsp. animalis strain YL2, complete genome	1	404316-404420	1	CRISPRCasFinder	no		PD-DExK,casR,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL	Orphan	TCCAACTGTCCCGAATTACGCAGA	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,casR,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL	NA,NA	NA|157aa|up_9|NZ_CP015407.2_382310_382781_+	PRK14520, rpsP, 30S ribosomal protein S16; Provisional	NA|78aa|up_8|NZ_CP015407.2_382785_383019_+	PRK02821, PRK02821, RNA-binding protein	NA|213aa|up_7|NZ_CP015407.2_383015_383654_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|276aa|up_6|NZ_CP015407.2_383844_384672_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|192aa|up_5|NZ_CP015407.2_384708_385284_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|3565aa|up_4|NZ_CP015407.2_385690_396385_-	pfam12892, FctA, Spy0128-like isopeptide containing domain	NA|416aa|up_3|NZ_CP015407.2_396681_397929_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|802aa|up_2|NZ_CP015407.2_398361_400767_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|66aa|up_1|NZ_CP015407.2_400954_401152_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|352aa|up_0|NZ_CP015407.2_401425_402481_+	cd01944, YegV_kinase_like, YegV-like sugar kinase	NA|976aa|down_0|NZ_CP015407.2_404507_407435_+	sd00006, TPR, Tetratricopeptide repeat	NA|397aa|down_1|NZ_CP015407.2_407721_408912_-	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|289aa|down_2|NZ_CP015407.2_408975_409842_-	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|399aa|down_3|NZ_CP015407.2_409956_411153_+	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|206aa|down_4|NZ_CP015407.2_411326_411944_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|275aa|down_5|NZ_CP015407.2_411991_412816_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|364aa|down_6|NZ_CP015407.2_412799_413891_-	pfam02517, Abi, CAAX protease self-immunity	NA|375aa|down_7|NZ_CP015407.2_414339_415464_-	pfam16146, DUF4854, Domain of unknown function (DUF4854)	NA|379aa|down_8|NZ_CP015407.2_415617_416754_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|333aa|down_9|NZ_CP015407.2_417253_418252_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
GCF_001688645.2_ASM168864v2	NZ_CP015407	Bifidobacterium animalis subsp. animalis strain YL2, complete genome	2	619422-619500	2	CRISPRCasFinder	no		PD-DExK,casR,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL	Orphan	GCCCCCAGCACCGCCAGCACATACC	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,casR,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL	NA|411aa|up_8|NZ_CP015407.2_605869_607102_+,NA|113aa|down_1|NZ_CP015407.2_621402_621741_-	NA|207aa|up_9|NZ_CP015407.2_605091_605712_-	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|411aa|up_8|NZ_CP015407.2_605869_607102_+	NA	NA|324aa|up_7|NZ_CP015407.2_607151_608123_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|446aa|up_6|NZ_CP015407.2_608350_609688_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|205aa|up_5|NZ_CP015407.2_610156_610771_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|618aa|up_4|NZ_CP015407.2_610945_612799_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|739aa|up_3|NZ_CP015407.2_613093_615310_+	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|485aa|up_2|NZ_CP015407.2_615728_617183_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|83aa|up_1|NZ_CP015407.2_617958_618207_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|85aa|up_0|NZ_CP015407.2_618478_618733_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|318aa|down_0|NZ_CP015407.2_620368_621322_-	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional	NA|113aa|down_1|NZ_CP015407.2_621402_621741_-	NA	NA|362aa|down_2|NZ_CP015407.2_621918_623004_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|351aa|down_3|NZ_CP015407.2_623088_624141_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|805aa|down_4|NZ_CP015407.2_624415_626830_-	pfam00326, Peptidase_S9, Prolyl oligopeptidase family	NA|234aa|down_5|NZ_CP015407.2_627382_628084_+	pfam12401, DUF3662, Protein of unknown function (DUF2662)	NA|182aa|down_6|NZ_CP015407.2_628102_628648_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|524aa|down_7|NZ_CP015407.2_628654_630226_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|581aa|down_8|NZ_CP015407.2_630228_631971_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|489aa|down_9|NZ_CP015407.2_631963_633430_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
GCF_001688645.2_ASM168864v2	NZ_CP015407	Bifidobacterium animalis subsp. animalis strain YL2, complete genome	3	990588-990844	1	PILER-CR	no		PD-DExK,casR,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL	Orphan	ATCTGTCTCCTTTTACGCAGAAG	23	0	0	NA	NA	NA	3	3	Orphan	PD-DExK,casR,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL	NA|283aa|up_7|NZ_CP015407.2_973823_974672_+,NA|699aa|up_4|NZ_CP015407.2_977955_980052_+,NA	NA|248aa|up_9|NZ_CP015407.2_971943_972687_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|250aa|up_8|NZ_CP015407.2_972766_973516_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|283aa|up_7|NZ_CP015407.2_973823_974672_+	NA	NA|170aa|up_6|NZ_CP015407.2_974802_975312_-	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|732aa|up_5|NZ_CP015407.2_975432_977628_-	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|699aa|up_4|NZ_CP015407.2_977955_980052_+	NA	NA|1753aa|up_3|NZ_CP015407.2_980143_985402_+	pfam18202, TQ, T-Q ester bond containing domain	NA|553aa|up_2|NZ_CP015407.2_985599_987258_+	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	NA|591aa|up_1|NZ_CP015407.2_987461_989234_+	PRK09259, PRK09259, putative oxalyl-CoA decarboxylase; Validated	NA|368aa|up_0|NZ_CP015407.2_989338_990442_+	PRK09903, PRK09903, transporter YfdV	NA|444aa|down_0|NZ_CP015407.2_993395_994727_-	PRK05398, PRK05398, formyl-coenzyme A transferase; Provisional	NA|343aa|down_1|NZ_CP015407.2_995432_996461_+	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional	NA|271aa|down_2|NZ_CP015407.2_996753_997566_+	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|77aa|down_3|NZ_CP015407.2_997617_997848_+	PRK07874, PRK07874, ATP synthase F0 subunit C	NA|176aa|down_4|NZ_CP015407.2_997901_998429_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|278aa|down_5|NZ_CP015407.2_998486_999320_+	PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional	NA|547aa|down_6|NZ_CP015407.2_999383_1001024_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|307aa|down_7|NZ_CP015407.2_1001027_1001948_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|496aa|down_8|NZ_CP015407.2_1001957_1003445_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|103aa|down_9|NZ_CP015407.2_1003444_1003753_+	PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional
GCF_001688645.2_ASM168864v2	NZ_CP015407	Bifidobacterium animalis subsp. animalis strain YL2, complete genome	4	1030280-1035019	2,3,1,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,casR,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL	Type I-E	GTTTGCCCCGCACAAGCGGGGATGATCCG,GTTTGCCCCGCACAAGCGGGGATGATCCG,GTTTGCCCCGCACAAGCGGGGATGATCCG,GTTTGCCCCGCACAAGCGGGGATGATCCG	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	35,77,77,35	77	TypeI-E	PD-DExK,casR,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,WYL	NA,NA|296aa|down_2|NZ_CP015407.2_1038908_1039796_+,NA|165aa|down_3|NZ_CP015407.2_1039850_1040345_-,NA|191aa|down_4|NZ_CP015407.2_1040292_1040865_-,NA|185aa|down_5|NZ_CP015407.2_1042046_1042601_+,NA|63aa|down_6|NZ_CP015407.2_1042654_1042843_+	NA|437aa|up_9|NZ_CP015407.2_1017805_1019116_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|328aa|up_8|NZ_CP015407.2_1019178_1020162_+	PRK01212, PRK01212, homoserine kinase; Provisional	cas3|1055aa|up_7|NZ_CP015407.2_1020609_1023774_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|562aa|up_6|NZ_CP015407.2_1023757_1025443_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|223aa|up_5|NZ_CP015407.2_1025445_1026114_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|393aa|up_4|NZ_CP015407.2_1026161_1027340_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|258aa|up_3|NZ_CP015407.2_1027342_1028116_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|225aa|up_2|NZ_CP015407.2_1028118_1028793_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|323aa|up_1|NZ_CP015407.2_1028816_1029785_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|122aa|up_0|NZ_CP015407.2_1029819_1030185_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|285aa|down_0|NZ_CP015407.2_1035752_1036607_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|468aa|down_1|NZ_CP015407.2_1037256_1038660_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|296aa|down_2|NZ_CP015407.2_1038908_1039796_+	NA	NA|165aa|down_3|NZ_CP015407.2_1039850_1040345_-	NA	NA|191aa|down_4|NZ_CP015407.2_1040292_1040865_-	NA	NA|185aa|down_5|NZ_CP015407.2_1042046_1042601_+	NA	NA|63aa|down_6|NZ_CP015407.2_1042654_1042843_+	NA	NA|491aa|down_7|NZ_CP015407.2_1043832_1045305_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|610aa|down_8|NZ_CP015407.2_1045370_1047200_+	pfam13196, DUF4012, Protein of unknown function (DUF4012)	NA|189aa|down_9|NZ_CP015407.2_1047280_1047847_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase
