assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001690155.1_ASM169015v1	NZ_CP016553	Aggregatibacter actinomycetemcomitans strain IDH781 chromosome, complete genome	1	1147800-1151913	1,1,1,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		PD-DExK,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG,WYL,cas8f,cas5f,cas7f,cas6f,cas3HD	Orphan	TTTCTAAGCTGCCTATTCGGCAGTGAAG,TTTCTAAGCTGCCTATTCGGCAGTGAAG,TTTCTAAGCTGCCTATTCGGCAGTGAAG,TATTTCTAAGCTGCCTATTCGGCAGTGAAG,TTTCTAAGCTGCCTATTCGGCAGTGAAG	28,28,28,30,28	0	0	NA	NA	I-F:I-F:I-F:I-F:I-F	62,68,68,62,62	68	Orphan	PD-DExK,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG,WYL,cas8f,cas5f,cas7f,cas6f,cas3HD	NA,NA|54aa|down_2|NZ_CP016553.1_1154679_1154841_-,NA|168aa|down_8|NZ_CP016553.1_1159611_1160115_+	NA|742aa|up_9|NZ_CP016553.1_1136192_1138418_+	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein	NA|380aa|up_8|NZ_CP016553.1_1138421_1139561_+	cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins	NA|368aa|up_7|NZ_CP016553.1_1139521_1140625_+	cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2	NA|277aa|up_6|NZ_CP016553.1_1142708_1143539_-	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|268aa|up_5|NZ_CP016553.1_1143802_1144606_+	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|448aa|up_4|NZ_CP016553.1_1144623_1145967_+	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters	NA|83aa|up_3|NZ_CP016553.1_1146561_1146810_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|78aa|up_2|NZ_CP016553.1_1146846_1147080_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|92aa|up_1|NZ_CP016553.1_1147069_1147345_-	pfam13276, HTH_21, HTH-like domain	NA|34aa|up_0|NZ_CP016553.1_1147601_1147703_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|503aa|down_0|NZ_CP016553.1_1152093_1153602_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|343aa|down_1|NZ_CP016553.1_1153658_1154687_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|54aa|down_2|NZ_CP016553.1_1154679_1154841_-	NA	NA|228aa|down_3|NZ_CP016553.1_1154924_1155608_+	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional	NA|574aa|down_4|NZ_CP016553.1_1155620_1157342_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|224aa|down_5|NZ_CP016553.1_1157350_1158022_+	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|231aa|down_6|NZ_CP016553.1_1158038_1158731_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|232aa|down_7|NZ_CP016553.1_1158909_1159605_+	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|168aa|down_8|NZ_CP016553.1_1159611_1160115_+	NA	NA|218aa|down_9|NZ_CP016553.1_1160114_1160768_+	PRK06265, PRK06265, cobalt transporter CbiM
GCF_001690155.1_ASM169015v1	NZ_CP016553	Aggregatibacter actinomycetemcomitans strain IDH781 chromosome, complete genome	2	1234557-1234787	4,2	PILER-CR,CRISPRCasFinder	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	PD-DExK,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG,WYL,cas8f,cas5f,cas7f,cas6f,cas3HD	Type I-U, Type I-U?,Type I-C	TGCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT,GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT	33,32	0	0	NA	NA	NA:NA	2,3	3	TypeI-U,TypeI-U?,TypeI-C	PD-DExK,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG,WYL,cas8f,cas5f,cas7f,cas6f,cas3HD	NA,NA	NA|100aa|up_9|NZ_CP016553.1_1220610_1220910_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|978aa|up_8|NZ_CP016553.1_1220945_1223879_-	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	cas3|822aa|up_7|NZ_CP016553.1_1224078_1226544_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|260aa|up_6|NZ_CP016553.1_1226552_1227332_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|678aa|up_5|NZ_CP016553.1_1227328_1229362_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|298aa|up_4|NZ_CP016553.1_1229383_1230277_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|216aa|up_3|NZ_CP016553.1_1230452_1231100_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|615aa|up_2|NZ_CP016553.1_1231162_1233007_+	pfam03235, DUF262, Protein of unknown function DUF262	cas1|338aa|up_1|NZ_CP016553.1_1233054_1234068_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP016553.1_1234071_1234365_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|759aa|down_0|NZ_CP016553.1_1235061_1237338_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|311aa|down_1|NZ_CP016553.1_1237628_1238561_+	cd08441, PBP2_MetR, The C-terminal substrate binding domain of LysR-type transcriptional regulator metR, which regulates the expression of methionine biosynthetic genes, contains type 2 periplasmic binding fold	NA|243aa|down_2|NZ_CP016553.1_1238565_1239294_+	TIGR00346, Uncharacterized_membrane_protein_HI_1738, 4-azaleucine resistance probable transporter AzlC	NA|111aa|down_3|NZ_CP016553.1_1239294_1239627_+	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]	NA|925aa|down_4|NZ_CP016553.1_1239693_1242468_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|789aa|down_5|NZ_CP016553.1_1242545_1244912_-	pfam07715, Plug, TonB-dependent Receptor Plug Domain	NA|298aa|down_6|NZ_CP016553.1_1245204_1246098_+	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|226aa|down_7|NZ_CP016553.1_1246090_1246768_+	PRK00023, cmk, (d)CMP kinase	NA|549aa|down_8|NZ_CP016553.1_1246865_1248512_+	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|96aa|down_9|NZ_CP016553.1_1248573_1248861_+	PRK00199, ihfB, integration host factor subunit beta; Reviewed
GCF_001690155.1_ASM169015v1	NZ_CP016553	Aggregatibacter actinomycetemcomitans strain IDH781 chromosome, complete genome	3	2117416-2117781	3,2,5	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas7,cas5,cas3,cas3HD	PD-DExK,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG,WYL,cas8f,cas5f,cas7f,cas6f,cas3HD	Unclear	GTTTCAACACACAGCCACCCGAAGGTGGCTGC,GTTTCAACACACAGCCACCCGAAGGTGGCTGC,GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAC	32,32,32	0	0	NA	NA	NA:NA:NA	5,5,4	5	Unclear	PD-DExK,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,DinG,WYL,cas8f,cas5f,cas7f,cas6f,cas3HD	NA,NA|248aa|down_0|NZ_CP016553.1_2118451_2119195_-,NA|194aa|down_8|NZ_CP016553.1_2130021_2130603_-	NA|556aa|up_9|NZ_CP016553.1_2104185_2105853_+	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|447aa|up_8|NZ_CP016553.1_2106349_2107690_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|206aa|up_7|NZ_CP016553.1_2107702_2108320_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|915aa|up_6|NZ_CP016553.1_2108412_2111157_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|160aa|up_5|NZ_CP016553.1_2111160_2111640_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|335aa|up_4|NZ_CP016553.1_2112355_2113360_-	TIGR00433, biotin_synthase, biotin synthase	NA|216aa|up_3|NZ_CP016553.1_2113405_2114053_-	COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]	NA|543aa|up_2|NZ_CP016553.1_2114036_2115665_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|335aa|up_1|NZ_CP016553.1_2115673_2116678_-	TIGR01276, Thiamine-binding_periplasmic_protein, thiamine ABC transporter, periplasmic binding protein	NA|127aa|up_0|NZ_CP016553.1_2116699_2117080_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|248aa|down_0|NZ_CP016553.1_2118451_2119195_-	NA	cas4|217aa|down_1|NZ_CP016553.1_2119221_2119872_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|289aa|down_2|NZ_CP016553.1_2120016_2120883_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|225aa|down_3|NZ_CP016553.1_2122669_2123344_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|906aa|down_4|NZ_CP016553.1_2123458_2126176_-	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|345aa|down_5|NZ_CP016553.1_2126172_2127207_-	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|579aa|down_6|NZ_CP016553.1_2127333_2129070_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|314aa|down_7|NZ_CP016553.1_2129083_2130025_-	pfam16162, DUF4868, Domain of unknown function (DUF4868)	NA|194aa|down_8|NZ_CP016553.1_2130021_2130603_-	NA	NA|959aa|down_9|NZ_CP016553.1_2130632_2133509_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA
