assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001693255.1_ASM169325v1	NZ_CP016475	Synechococcus sp. PCC 7003 plasmid unnamed1, complete sequence	1	9619-9760	1	CRISPRCasFinder	no			Orphan	GGTATTTTTTGTCTTACACCAAA	23	0	0	NA	NA	NA	3	3	Orphan	csa3,c2c9_V-U4,cas14j,DEDDh,cas3,DinG,cas4,WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18	NA|61aa|up_9|NZ_CP016475.1_4466_4649_+,NA|61aa|up_7|NZ_CP016475.1_5090_5273_+,NA|77aa|up_6|NZ_CP016475.1_5333_5564_+,NA|83aa|up_5|NZ_CP016475.1_5649_5898_+,NA|110aa|up_3|NZ_CP016475.1_6916_7246_+,NA|87aa|up_2|NZ_CP016475.1_7335_7596_+,NA|268aa|up_1|NZ_CP016475.1_7948_8752_+,NA|216aa|up_0|NZ_CP016475.1_8904_9552_+,NA|90aa|down_1|NZ_CP016475.1_10863_11133_+,NA|149aa|down_3|NZ_CP016475.1_12213_12660_+,NA|76aa|down_4|NZ_CP016475.1_13169_13397_+,NA|96aa|down_5|NZ_CP016475.1_13453_13741_+,NA|1148aa|down_8|NZ_CP016475.1_16020_19464_+	NA|61aa|up_9|NZ_CP016475.1_4466_4649_+	NA	NA|143aa|up_8|NZ_CP016475.1_4654_5083_+	pfam06378, DUF1071, Protein of unknown function (DUF1071)	NA|61aa|up_7|NZ_CP016475.1_5090_5273_+	NA	NA|77aa|up_6|NZ_CP016475.1_5333_5564_+	NA	NA|83aa|up_5|NZ_CP016475.1_5649_5898_+	NA	NA|263aa|up_4|NZ_CP016475.1_6159_6948_+	cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology	NA|110aa|up_3|NZ_CP016475.1_6916_7246_+	NA	NA|87aa|up_2|NZ_CP016475.1_7335_7596_+	NA	NA|268aa|up_1|NZ_CP016475.1_7948_8752_+	NA	NA|216aa|up_0|NZ_CP016475.1_8904_9552_+	NA	NA|343aa|down_0|NZ_CP016475.1_9821_10850_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|90aa|down_1|NZ_CP016475.1_10863_11133_+	NA	NA|313aa|down_2|NZ_CP016475.1_11240_12179_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|149aa|down_3|NZ_CP016475.1_12213_12660_+	NA	NA|76aa|down_4|NZ_CP016475.1_13169_13397_+	NA	NA|96aa|down_5|NZ_CP016475.1_13453_13741_+	NA	NA|287aa|down_6|NZ_CP016475.1_13791_14652_+	COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism]	NA|160aa|down_7|NZ_CP016475.1_14786_15266_-	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]	NA|1148aa|down_8|NZ_CP016475.1_16020_19464_+	NA	NA|309aa|down_9|NZ_CP016475.1_19482_20409_-	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases
GCF_001693255.1_ASM169325v1	NZ_CP016475	Synechococcus sp. PCC 7003 plasmid unnamed1, complete sequence	2	14621-14741	1	PILER-CR	no			Orphan	TAATTTTTGTCTTACACCAAAG	22	0	0	NA	NA	NA	2	2	Orphan	csa3,c2c9_V-U4,cas14j,DEDDh,cas3,DinG,cas4,WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18	NA|110aa|up_9|NZ_CP016475.1_6916_7246_+,NA|87aa|up_8|NZ_CP016475.1_7335_7596_+,NA|268aa|up_7|NZ_CP016475.1_7948_8752_+,NA|216aa|up_6|NZ_CP016475.1_8904_9552_+,NA|90aa|up_4|NZ_CP016475.1_10863_11133_+,NA|149aa|up_2|NZ_CP016475.1_12213_12660_+,NA|76aa|up_1|NZ_CP016475.1_13169_13397_+,NA|96aa|up_0|NZ_CP016475.1_13453_13741_+,NA|1148aa|down_1|NZ_CP016475.1_16020_19464_+,NA|66aa|down_6|NZ_CP016475.1_26815_27013_-	NA|110aa|up_9|NZ_CP016475.1_6916_7246_+	NA	NA|87aa|up_8|NZ_CP016475.1_7335_7596_+	NA	NA|268aa|up_7|NZ_CP016475.1_7948_8752_+	NA	NA|216aa|up_6|NZ_CP016475.1_8904_9552_+	NA	NA|343aa|up_5|NZ_CP016475.1_9821_10850_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|90aa|up_4|NZ_CP016475.1_10863_11133_+	NA	NA|313aa|up_3|NZ_CP016475.1_11240_12179_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|149aa|up_2|NZ_CP016475.1_12213_12660_+	NA	NA|76aa|up_1|NZ_CP016475.1_13169_13397_+	NA	NA|96aa|up_0|NZ_CP016475.1_13453_13741_+	NA	NA|160aa|down_0|NZ_CP016475.1_14786_15266_-	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]	NA|1148aa|down_1|NZ_CP016475.1_16020_19464_+	NA	NA|309aa|down_2|NZ_CP016475.1_19482_20409_-	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|706aa|down_3|NZ_CP016475.1_20618_22736_+	COG3972, COG3972, Superfamily I DNA and RNA helicases [General function prediction only]	NA|224aa|down_4|NZ_CP016475.1_22761_23433_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|712aa|down_5|NZ_CP016475.1_24626_26762_-	COG3586, COG3586, Uncharacterized conserved protein [Function unknown]	NA|66aa|down_6|NZ_CP016475.1_26815_27013_-	NA	NA|521aa|down_7|NZ_CP016475.1_27141_28704_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|98aa|down_8|NZ_CP016475.1_28703_28997_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|118aa|down_9|NZ_CP016475.1_28993_29347_+	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]
GCF_001693255.1_ASM169325v1	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	1	133101-137011	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18	cas4,WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18,cas14j	Type III-A,Type III-D,Type III-C,Type III-B	GTTTCCAATCTATTTGCTTCTCAGGTAAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTAAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTAAAGAGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	52,52,51	52	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	csa3,c2c9_V-U4,cas14j,DEDDh,cas3,DinG,cas4,WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18	NA|113aa|up_5|NZ_CP016476.1_130215_130554_-,NA|75aa|up_4|NZ_CP016476.1_130550_130775_-,NA|234aa|up_3|NZ_CP016476.1_130777_131479_-,NA|138aa|up_2|NZ_CP016476.1_131551_131965_-,csx18|99aa|down_2|NZ_CP016476.1_138449_138746_-,NA|414aa|down_4|NZ_CP016476.1_140591_141833_+	cmr4gr7|289aa|up_9|NZ_CP016476.1_124423_125290_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|369aa|up_8|NZ_CP016476.1_125399_126506_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	NA|119aa|up_7|NZ_CP016476.1_126542_126899_-	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins	cas10|995aa|up_6|NZ_CP016476.1_126934_129919_-	pfam12469, DUF3692, CRISPR-associated protein	NA|113aa|up_5|NZ_CP016476.1_130215_130554_-	NA	NA|75aa|up_4|NZ_CP016476.1_130550_130775_-	NA	NA|234aa|up_3|NZ_CP016476.1_130777_131479_-	NA	NA|138aa|up_2|NZ_CP016476.1_131551_131965_-	NA	NA|105aa|up_1|NZ_CP016476.1_132402_132717_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|95aa|up_0|NZ_CP016476.1_132706_132991_-	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	cas2|94aa|down_0|NZ_CP016476.1_137188_137470_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|329aa|down_1|NZ_CP016476.1_137466_138453_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csx18|99aa|down_2|NZ_CP016476.1_138449_138746_-	NA	WYL|395aa|down_3|NZ_CP016476.1_139069_140254_+	pfam13280, WYL, WYL domain	NA|414aa|down_4|NZ_CP016476.1_140591_141833_+	NA	NA|507aa|down_5|NZ_CP016476.1_141959_143480_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|141aa|down_6|NZ_CP016476.1_143514_143937_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|216aa|down_7|NZ_CP016476.1_144143_144791_-	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|200aa|down_8|NZ_CP016476.1_145506_146106_+	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|981aa|down_9|NZ_CP016476.1_146146_149089_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]
GCF_001693255.1_ASM169325v1	NZ_CP016474	Synechococcus sp. PCC 7003 chromosome, complete genome	1	2006596-2006940	1	CRT	no		csa3,c2c9_V-U4,cas14j,DEDDh,cas3,DinG	Orphan	CTATGGCGATATCGGCCC	18	0	0	NA	NA	NA	7	7	Orphan	csa3,c2c9_V-U4,cas14j,DEDDh,cas3,DinG,cas4,WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18	NA|87aa|up_0|NZ_CP016474.1_2006237_2006498_-,NA|384aa|down_0|NZ_CP016474.1_2006963_2008115_-,NA|122aa|down_2|NZ_CP016474.1_2008998_2009364_+,NA|70aa|down_4|NZ_CP016474.1_2012207_2012417_-,NA|88aa|down_6|NZ_CP016474.1_2013155_2013419_-,NA|72aa|down_7|NZ_CP016474.1_2013445_2013661_-,NA|154aa|down_8|NZ_CP016474.1_2013660_2014122_-,NA|71aa|down_9|NZ_CP016474.1_2014131_2014344_-	NA|228aa|up_9|NZ_CP016474.1_1996823_1997507_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|193aa|up_8|NZ_CP016474.1_1997640_1998219_+	pfam10719, ComFB, Late competence development protein ComFB	NA|253aa|up_7|NZ_CP016474.1_1998248_1999007_+	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|568aa|up_6|NZ_CP016474.1_1999022_2000726_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|319aa|up_5|NZ_CP016474.1_2000748_2001705_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|375aa|up_4|NZ_CP016474.1_2001895_2003020_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|197aa|up_3|NZ_CP016474.1_2003078_2003669_+	pfam04755, PAP_fibrillin, PAP_fibrillin	NA|156aa|up_2|NZ_CP016474.1_2003821_2004289_-	COG2149, COG2149, Predicted membrane protein [Function unknown]	NA|164aa|up_1|NZ_CP016474.1_2005699_2006191_+	pfam07445, PriC, Primosomal replication protein priC	NA|87aa|up_0|NZ_CP016474.1_2006237_2006498_-	NA	NA|384aa|down_0|NZ_CP016474.1_2006963_2008115_-	NA	NA|78aa|down_1|NZ_CP016474.1_2008517_2008751_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|122aa|down_2|NZ_CP016474.1_2008998_2009364_+	NA	NA|857aa|down_3|NZ_CP016474.1_2009633_2012204_+	pfam12965, DUF3854, Domain of unknown function (DUF3854)	NA|70aa|down_4|NZ_CP016474.1_2012207_2012417_-	NA	NA|235aa|down_5|NZ_CP016474.1_2012458_2013163_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|88aa|down_6|NZ_CP016474.1_2013155_2013419_-	NA	NA|72aa|down_7|NZ_CP016474.1_2013445_2013661_-	NA	NA|154aa|down_8|NZ_CP016474.1_2013660_2014122_-	NA	NA|71aa|down_9|NZ_CP016474.1_2014131_2014344_-	NA
GCF_001693255.1_ASM169325v1	NZ_CP016474	Synechococcus sp. PCC 7003 chromosome, complete genome	2	2246782-2246889	1	CRISPRCasFinder	no		csa3,c2c9_V-U4,cas14j,DEDDh,cas3,DinG	Orphan	GTTAGGAGAGGGTCAACTACCTCCCTCAAGGGACAC	36	0	0	NA	NA	NA	1	1	Orphan	csa3,c2c9_V-U4,cas14j,DEDDh,cas3,DinG,cas4,WYL,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18	NA|141aa|up_4|NZ_CP016474.1_2240670_2241093_-,NA|94aa|down_2|NZ_CP016474.1_2249663_2249945_+,NA|162aa|down_4|NZ_CP016474.1_2251419_2251905_-,NA|146aa|down_6|NZ_CP016474.1_2252587_2253025_+,NA|86aa|down_9|NZ_CP016474.1_2255064_2255322_-	NA|750aa|up_9|NZ_CP016474.1_2232142_2234392_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|358aa|up_8|NZ_CP016474.1_2234846_2235920_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|328aa|up_7|NZ_CP016474.1_2235957_2236941_+	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|982aa|up_6|NZ_CP016474.1_2237144_2240090_+	cd02081, P-type_ATPase_Ca_PMCA-like, animal plasma membrane Ca2(+)-ATPases (PMCA), similar to human ATP2B1-4/PMCA1-4, and related Ca2(+)-ATPases including Saccharomyces cerevisiae vacuolar PMC1	NA|165aa|up_5|NZ_CP016474.1_2240093_2240588_-	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins	NA|141aa|up_4|NZ_CP016474.1_2240670_2241093_-	NA	NA|200aa|up_3|NZ_CP016474.1_2241089_2241689_-	PRK12518, PRK12518, RNA polymerase sigma factor; Provisional	NA|794aa|up_2|NZ_CP016474.1_2242097_2244479_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|394aa|up_1|NZ_CP016474.1_2244857_2246039_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|225aa|up_0|NZ_CP016474.1_2246045_2246720_+	TIGR02252, Rhythmically_expressed_gene_2_protein, REG-2-like, HAD superfamily (subfamily IA) hydrolase	NA|286aa|down_0|NZ_CP016474.1_2246922_2247780_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|491aa|down_1|NZ_CP016474.1_2248049_2249522_+	PRK00654, glgA, glycogen synthase GlgA	NA|94aa|down_2|NZ_CP016474.1_2249663_2249945_+	NA	NA|449aa|down_3|NZ_CP016474.1_2250056_2251403_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|162aa|down_4|NZ_CP016474.1_2251419_2251905_-	NA	NA|96aa|down_5|NZ_CP016474.1_2252169_2252457_+	pfam02325, YGGT, YGGT family	NA|146aa|down_6|NZ_CP016474.1_2252587_2253025_+	NA	NA|432aa|down_7|NZ_CP016474.1_2253101_2254397_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|173aa|down_8|NZ_CP016474.1_2254511_2255030_-	pfam10881, DUF2726, Protein of unknown function (DUF2726)	NA|86aa|down_9|NZ_CP016474.1_2255064_2255322_-	NA
