The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016503	Helicobacter sp. MIT 01-6242 chromosome, complete genome	1594790	84597	92849	1594790	tRNA	Paramecium_bursaria_Chlorella_virus(16.67%)	8	NA	NA
WP_066341707.1|84597_85857_-	nucleotide sugar dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	20.4	4.3e-06
WP_066341708.1|86061_87438_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_066338286.1|87430_87826_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_066338289.1|87822_88713_-	carbon-nitrogen hydrolase	NA	M1HCD5	Acanthocystis_turfacea_Chlorella_virus	38.2	1.1e-51
WP_083985932.1|88856_89534_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	S4VW33	Pandoravirus	32.1	1.0e-06
WP_066338294.1|89518_90295_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	32.9	8.4e-29
WP_066338296.1|90291_91368_-	hypothetical protein	NA	A0A1V0SAK9	Catovirus	30.8	9.9e-20
WP_066338297.1|91811_92849_+	ribonucleotide-diphosphate reductase subunit beta	NA	U5PWJ8	Bacillus_phage	32.8	5.9e-54
>prophage 2
NZ_CP016503	Helicobacter sp. MIT 01-6242 chromosome, complete genome	1594790	582281	589256	1594790		uncultured_Mediterranean_phage(16.67%)	6	NA	NA
WP_066339324.1|582281_582557_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	43.2	1.3e-08
WP_066339327.1|582584_583883_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	44.3	7.1e-73
WP_066339329.1|583892_586712_-	RecB-like helicase	NA	G3MA40	Bacillus_virus	22.1	8.6e-07
WP_066339331.1|586871_587738_+	J domain-containing protein	NA	A0A2P1ELC3	Moumouvirus	62.3	1.3e-14
WP_066339334.1|587739_588084_+	helix-turn-helix transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	42.0	8.3e-05
WP_066339336.1|588080_589256_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	34.5	1.2e-55
>prophage 3
NZ_CP016503	Helicobacter sp. MIT 01-6242 chromosome, complete genome	1594790	885805	893242	1594790		Synechococcus_phage(50.0%)	9	NA	NA
WP_066340119.1|885805_886846_-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	51.5	2.5e-52
WP_066340124.1|887387_887690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_066340127.1|888194_888380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_066340130.1|888520_888793_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_066340132.1|889008_889512_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	40.9	6.2e-25
WP_066340134.1|889504_890218_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3FHU1	Synechococcus_phage	38.8	1.4e-38
WP_066340138.1|890217_891642_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	33.0	4.3e-55
WP_066340141.1|891638_892661_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	41.7	3.0e-66
WP_066340143.1|892654_893242_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.7	1.1e-20
>prophage 4
NZ_CP016503	Helicobacter sp. MIT 01-6242 chromosome, complete genome	1594790	1463577	1479763	1594790	integrase,transposase	Pseudomonas_phage(15.38%)	21	1460553:1460570	1484870:1484887
1460553:1460570	attL	TGATAGATTTTTTGAGCA	NA	NA	NA	NA
WP_066341453.1|1463577_1464747_+	hypothetical protein	NA	Q6QIB9	Burkholderia_phage	28.8	2.0e-18
WP_066340854.1|1464813_1465602_+	phosphoadenosine phosphosulfate reductase family protein	NA	A0A0F7L647	uncultured_marine_virus	26.9	4.7e-11
WP_066340855.1|1465603_1466032_+	phage virion morphogenesis protein	NA	H6V8N9	Pseudomonas_phage	52.1	3.1e-09
WP_066340856.1|1466032_1466353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_066340857.1|1466419_1466659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_066340858.1|1466655_1467060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_066340861.1|1467031_1467442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_066340862.1|1467521_1468007_-	host-nuclease inhibitor protein Gam	NA	A0A2K9VGT9	Faecalibacterium_phage	31.0	1.5e-15
WP_066340865.1|1468017_1468353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_066340866.1|1468773_1469640_-	AAA family ATPase	NA	A0A2D1GNS0	Pseudomonas_phage	31.6	8.5e-30
WP_066341455.1|1469811_1471935_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A219VHD4	Ochrobactrum_phage	22.0	9.4e-06
WP_066341456.1|1471943_1472147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_066341462.1|1472224_1472812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083986139.1|1472798_1473485_+	LexA family transcriptional regulator	NA	M5A9D2	Nitratiruptor_phage	35.2	5.3e-27
WP_083986141.1|1473777_1474329_+	restriction endonuclease	NA	A0A2H4JAL2	uncultured_Caudovirales_phage	33.3	1.9e-22
WP_066341464.1|1474325_1475150_+	site-specific DNA-methyltransferase	NA	A0A1W6JJW1	Lactococcus_phage	31.8	1.1e-23
WP_066341465.1|1475201_1476869_+	AIPR family protein	NA	E5G6M2	Salmonella_phage	31.7	1.6e-56
WP_083986143.1|1476904_1477672_-	TSUP family transporter	NA	NA	NA	NA	NA
WP_083986204.1|1477856_1478480_+	site-specific DNA-methyltransferase	NA	A0A0U1ZWH4	Staphylococcus_phage	27.1	1.3e-11
WP_066341468.1|1478713_1479457_+	3-oxoacyl-ACP reductase FabG	NA	F2NZ40	Diadromus_pulchellus_ascovirus	28.5	5.8e-11
WP_066341470.1|1479532_1479763_+	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	51.5	5.0e-06
1484870:1484887	attR	TGATAGATTTTTTGAGCA	NA	NA	NA	NA
