assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001693595.1_ASM169359v1	NZ_CP016273	Yersinia pestis strain Cadman chromosome, complete genome	1	214655-214767	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|90aa|up_2|NZ_CP016273.1_210507_210777_+,NA	NA|728aa|up_9|NZ_CP016273.1_197485_199669_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|663aa|up_8|NZ_CP016273.1_199670_201659_+	PRK03705, PRK03705, glycogen debranching protein GlgX	NA|477aa|up_7|NZ_CP016273.1_203166_204597_+	PRK00654, glgA, glycogen synthase GlgA	NA|816aa|up_6|NZ_CP016273.1_204765_207213_+	PRK14986, PRK14986, glycogen phosphorylase; Provisional	NA|474aa|up_5|NZ_CP016273.1_207375_208797_-	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|59aa|up_4|NZ_CP016273.1_209718_209895_+	TIGR03034, TIGR03034, conserved hypothetical protein	NA|155aa|up_3|NZ_CP016273.1_209878_210343_+	pfam06092, DUF943, Enterobacterial putative membrane protein (DUF943)	NA|90aa|up_2|NZ_CP016273.1_210507_210777_+	NA	NA|341aa|up_1|NZ_CP016273.1_212371_213394_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|up_0|NZ_CP016273.1_213393_214173_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|879aa|down_0|NZ_CP016273.1_215186_217823_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|388aa|down_1|NZ_CP016273.1_218196_219360_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|NZ_CP016273.1_219610_220615_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|259aa|down_3|NZ_CP016273.1_220780_221557_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|NZ_CP016273.1_221723_223097_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|NZ_CP016273.1_223695_226188_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|NZ_CP016273.1_226409_227027_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|NZ_CP016273.1_227192_229001_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|NZ_CP016273.1_229076_230405_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|NZ_CP016273.1_230469_231273_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCF_001693595.1_ASM169359v1	NZ_CP016273	Yersinia pestis strain Cadman chromosome, complete genome	2	1381142-1381263	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CTTAATGCCAATATTAATCGACATAATCAATTG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA|73aa|down_0|NZ_CP016273.1_1381619_1381838_+	NA|662aa|up_9|NZ_CP016273.1_1367394_1369380_+	PRK11054, helD, DNA helicase IV; Provisional	NA|155aa|up_8|NZ_CP016273.1_1369440_1369905_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|227aa|up_7|NZ_CP016273.1_1370083_1370764_-	PRK03641, PRK03641, DUF2057 family protein	NA|139aa|up_6|NZ_CP016273.1_1371079_1371496_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|106aa|up_5|NZ_CP016273.1_1371604_1371922_-	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|397aa|up_4|NZ_CP016273.1_1371982_1373173_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|93aa|up_3|NZ_CP016273.1_1373266_1373545_+	PRK14426, PRK14426, acylphosphatase; Provisional	NA|110aa|up_2|NZ_CP016273.1_1373596_1373926_-	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|806aa|up_1|NZ_CP016273.1_1377571_1379989_-	pfam01565, FAD_binding_4, FAD binding domain	NA|249aa|up_0|NZ_CP016273.1_1380142_1380889_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|73aa|down_0|NZ_CP016273.1_1381619_1381838_+	NA	NA|175aa|down_1|NZ_CP016273.1_1382101_1382626_+	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|428aa|down_2|NZ_CP016273.1_1382615_1383899_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|246aa|down_3|NZ_CP016273.1_1383900_1384638_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|413aa|down_4|NZ_CP016273.1_1384653_1385892_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|240aa|down_5|NZ_CP016273.1_1385884_1386604_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|251aa|down_6|NZ_CP016273.1_1386605_1387358_+	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|263aa|down_7|NZ_CP016273.1_1387360_1388149_+	cd05233, SDR_c, classical (c) SDRs	NA|147aa|down_8|NZ_CP016273.1_1388235_1388676_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|83aa|down_9|NZ_CP016273.1_1388713_1388962_+	PRK07117, PRK07117, acyl carrier protein; Validated
GCF_001693595.1_ASM169359v1	NZ_CP016273	Yersinia pestis strain Cadman chromosome, complete genome	3	2411636-2412144	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	2	2	2412024-2412055|2412084-2412116	NZ_CP016273.1_2006378-2006409|NZ_CP016273.1_2012290-2012258	I-F:I-F:I-F	8,8,7	8	TypeI-F	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|70aa|up_9|NZ_CP016273.1_2399374_2399584_-,NA|425aa|down_1|NZ_CP016273.1_2414308_2415583_-,NA|372aa|down_2|NZ_CP016273.1_2415621_2416737_-	NA|70aa|up_9|NZ_CP016273.1_2399374_2399584_-	NA	NA|453aa|up_8|NZ_CP016273.1_2399707_2401066_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|168aa|up_7|NZ_CP016273.1_2401112_2401616_+	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|340aa|up_6|NZ_CP016273.1_2401626_2402646_+	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	cas6f|185aa|up_5|NZ_CP016273.1_2402723_2403278_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|335aa|up_4|NZ_CP016273.1_2403288_2404293_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|up_3|NZ_CP016273.1_2404310_2405261_-	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|449aa|up_2|NZ_CP016273.1_2405257_2406604_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas3f|1096aa|up_1|NZ_CP016273.1_2407011_2410299_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_0|NZ_CP016273.1_2410295_2411276_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|415aa|down_0|NZ_CP016273.1_2412481_2413726_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|425aa|down_1|NZ_CP016273.1_2414308_2415583_-	NA	NA|372aa|down_2|NZ_CP016273.1_2415621_2416737_-	NA	NA|313aa|down_3|NZ_CP016273.1_2416859_2417798_-	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|352aa|down_4|NZ_CP016273.1_2417824_2418880_-	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|275aa|down_5|NZ_CP016273.1_2419026_2419851_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_6|NZ_CP016273.1_2419851_2420727_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|429aa|down_7|NZ_CP016273.1_2420835_2422122_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|347aa|down_8|NZ_CP016273.1_2422393_2423434_+	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|463aa|down_9|NZ_CP016273.1_2423450_2424839_+	PRK15414, PRK15414, phosphomannomutase
GCF_001693595.1_ASM169359v1	NZ_CP016273	Yersinia pestis strain Cadman chromosome, complete genome	4	2537621-2537951	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	2537649-2537681|2537892-2537923	NZ_CP016273.1_2014630-2014662|NZ_CP016273.1_2011944-2011975	I-F:I-F:I-F	4,5,5	5	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA,NA	NA|152aa|up_9|NZ_CP016273.1_2521194_2521650_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_8|NZ_CP016273.1_2522071_2523274_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|713aa|up_7|NZ_CP016273.1_2523456_2525595_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|345aa|up_6|NZ_CP016273.1_2525860_2526895_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|148aa|up_5|NZ_CP016273.1_2527261_2527705_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|85aa|up_4|NZ_CP016273.1_2527873_2528128_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|403aa|up_3|NZ_CP016273.1_2528149_2529358_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|293aa|up_2|NZ_CP016273.1_2529391_2530270_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|1993aa|up_1|NZ_CP016273.1_2530326_2536305_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NZ_CP016273.1_2536711_2537260_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NZ_CP016273.1_2537954_2538809_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|509aa|down_1|NZ_CP016273.1_2539114_2540641_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|642aa|down_2|NZ_CP016273.1_2540675_2542601_+	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|310aa|down_3|NZ_CP016273.1_2544005_2544935_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_4|NZ_CP016273.1_2544983_2546531_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_5|NZ_CP016273.1_2546542_2547571_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_6|NZ_CP016273.1_2547594_2548728_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_7|NZ_CP016273.1_2548759_2550730_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|353aa|down_8|NZ_CP016273.1_2550744_2551803_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_9|NZ_CP016273.1_2551812_2552628_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
GCF_001693595.1_ASM169359v1	NZ_CP016273	Yersinia pestis strain Cadman chromosome, complete genome	5	3100913-3101060	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	Orphan	CAAATAGCAAATAGCAAATAGCAAAT	26	1	3	3101019-3101034|3101019-3101034|3101019-3101034	NZ_CP016273.1_3101047-3101062|NZ_CP016273.1_3101054-3101069|NZ_CP016273.1_3101061-3101076	NA	2	2	Orphan	DEDDh,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3	NA|80aa|up_7|NZ_CP016273.1_3089102_3089342_+,NA	NA|270aa|up_9|NZ_CP016273.1_3087213_3088023_+	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|160aa|up_8|NZ_CP016273.1_3088286_3088766_+	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA|80aa|up_7|NZ_CP016273.1_3089102_3089342_+	NA	NA|405aa|up_6|NZ_CP016273.1_3091382_3092597_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|564aa|up_5|NZ_CP016273.1_3092831_3094523_+	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|435aa|up_4|NZ_CP016273.1_3094619_3095924_-	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|384aa|up_3|NZ_CP016273.1_3096127_3097279_-	PRK10381, PRK10381, LPS O-antigen length regulator; Provisional	NA|458aa|up_2|NZ_CP016273.1_3097326_3098700_-	PRK15414, PRK15414, phosphomannomutase	NA|248aa|up_1|NZ_CP016273.1_3098704_3099448_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|469aa|up_0|NZ_CP016273.1_3099450_3100857_-	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA|338aa|down_0|NZ_CP016273.1_3103193_3104207_-	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|381aa|down_1|NZ_CP016273.1_3105673_3106816_-	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated	NA|238aa|down_2|NZ_CP016273.1_3107195_3107909_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|448aa|down_3|NZ_CP016273.1_3107919_3109263_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|428aa|down_4|NZ_CP016273.1_3109336_3110620_-	COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]	NA|286aa|down_5|NZ_CP016273.1_3110620_3111478_-	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family	NA|438aa|down_6|NZ_CP016273.1_3111514_3112828_-	PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional	NA|358aa|down_7|NZ_CP016273.1_3112845_3113919_-	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs	NA|258aa|down_8|NZ_CP016273.1_3113923_3114697_-	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase	NA|330aa|down_9|NZ_CP016273.1_3114734_3115724_-	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
