assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001700855.1_ASM170085v1	NZ_CP008886	Raoultella ornithinolytica strain A14 chromosome, complete genome	1	429943-430165	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3	Orphan	GCGTAGCCCGGGCCAGGGGTTTATCCCGCTGTCCGGGAACCTCCCCGCTGGCGC	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3	NA,NA	NA|501aa|up_9|NZ_CP008886.1_415965_417468_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|274aa|up_8|NZ_CP008886.1_417566_418388_-	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism]	NA|502aa|up_7|NZ_CP008886.1_418740_420246_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|270aa|up_6|NZ_CP008886.1_420264_421074_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]	NA|287aa|up_5|NZ_CP008886.1_421418_422279_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|638aa|up_4|NZ_CP008886.1_422428_424342_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|647aa|up_3|NZ_CP008886.1_424870_426811_+	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase	NA|338aa|up_2|NZ_CP008886.1_426858_427872_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|295aa|up_1|NZ_CP008886.1_427914_428799_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|300aa|up_0|NZ_CP008886.1_428822_429722_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|303aa|down_0|NZ_CP008886.1_430387_431296_+	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|656aa|down_1|NZ_CP008886.1_431310_433278_+	PRK08211, PRK08211, YjhG/YagF family D-xylonate dehydratase	NA|460aa|down_2|NZ_CP008886.1_433637_435017_+	PRK09669, PRK09669, putative symporter YagG; Provisional	NA|540aa|down_3|NZ_CP008886.1_435029_436649_+	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism]	NA|253aa|down_4|NZ_CP008886.1_436653_437412_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|437aa|down_5|NZ_CP008886.1_437764_439075_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|358aa|down_6|NZ_CP008886.1_439067_440141_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|275aa|down_7|NZ_CP008886.1_440146_440971_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|296aa|down_8|NZ_CP008886.1_440981_441869_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|291aa|down_9|NZ_CP008886.1_441858_442731_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
GCF_001700855.1_ASM170085v1	NZ_CP008886	Raoultella ornithinolytica strain A14 chromosome, complete genome	2	836627-836738	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3	Orphan	CGGCCCATCGGGTGACGGGCAGGACGCCCGTCATACAAAA	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3	NA,NA	NA|115aa|up_9|NZ_CP008886.1_825264_825609_+	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional	NA|208aa|up_8|NZ_CP008886.1_825666_826290_-	PRK10578, PRK10578, hypothetical protein; Provisional	NA|267aa|up_7|NZ_CP008886.1_826432_827233_-	PRK03379, PRK03379, vitamin B12-transporter protein BtuF; Provisional	NA|233aa|up_6|NZ_CP008886.1_827225_827924_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|505aa|up_5|NZ_CP008886.1_828008_829523_+	PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional	NA|480aa|up_4|NZ_CP008886.1_829657_831097_+	PRK10942, PRK10942, serine endoprotease DegP	NA|386aa|up_3|NZ_CP008886.1_831287_832445_+	PRK11477, PRK11477, CdaR family transcriptional regulator	NA|130aa|up_2|NZ_CP008886.1_832535_832925_-	PRK13677, PRK13677, DUF3461 family protein	NA|275aa|up_1|NZ_CP008886.1_833032_833857_-	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional	NA|888aa|up_0|NZ_CP008886.1_833892_836556_-	PRK05007, PRK05007, bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA|265aa|down_0|NZ_CP008886.1_836761_837556_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|242aa|down_1|NZ_CP008886.1_837879_838605_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|284aa|down_2|NZ_CP008886.1_838722_839574_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|242aa|down_3|NZ_CP008886.1_839721_840447_+	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|186aa|down_4|NZ_CP008886.1_840597_841155_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|401aa|down_5|NZ_CP008886.1_841394_842597_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|253aa|down_6|NZ_CP008886.1_842846_843605_+	PRK10240, PRK10240, (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA|286aa|down_7|NZ_CP008886.1_843617_844475_+	PRK11624, cdsA, phosphatidate cytidylyltransferase	NA|451aa|down_8|NZ_CP008886.1_844486_845839_+	PRK10779, PRK10779, sigma E protease regulator RseP	NA|810aa|down_9|NZ_CP008886.1_845870_848300_+	PRK11067, PRK11067, outer membrane protein assembly factor YaeT; Provisional
GCF_001700855.1_ASM170085v1	NZ_CP008886	Raoultella ornithinolytica strain A14 chromosome, complete genome	3	1284583-1284721	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3	Orphan	GAGTTTCCCGGAGAGCGGCGCCAGCGCCTTATCCGGGCTACCCGACCGCACAA	53	1	9	1284636-1284668|1284636-1284668|1284636-1284668|1284636-1284668|1284636-1284668|1284636-1284668|1284636-1284668|1284636-1284668|1284636-1284668	NZ_CP008886.1_1281600-1281568|NZ_CP008886.1_1276504-1276536|NZ_CP008886.1_1276586-1276618|NZ_CP008886.1_1276666-1276698|NZ_CP008886.1_1276748-1276780|NZ_CP008886.1_1281776-1281744|NZ_CP008886.1_3492291-3492259|NZ_CP008886.1_1281688-1281656|NZ_CP008886.1_3492168-3492136	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3	NA,NA	NA|337aa|up_9|NZ_CP008886.1_1272959_1273970_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|395aa|up_8|NZ_CP008886.1_1274000_1275185_+	PRK08310, PRK08310, amidase; Provisional	NA|423aa|up_7|NZ_CP008886.1_1275174_1276443_+	PRK12893, PRK12893, Zn-dependent hydrolase	NA|489aa|up_6|NZ_CP008886.1_1276860_1278327_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|284aa|up_5|NZ_CP008886.1_1278559_1279411_+	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|214aa|up_4|NZ_CP008886.1_1279459_1280101_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|222aa|up_3|NZ_CP008886.1_1280115_1280781_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|254aa|up_2|NZ_CP008886.1_1280773_1281535_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|255aa|up_1|NZ_CP008886.1_1282206_1282971_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|446aa|up_0|NZ_CP008886.1_1283151_1284489_+	PRK06062, PRK06062, hypothetical protein; Provisional	NA|235aa|down_0|NZ_CP008886.1_1284777_1285482_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|279aa|down_1|NZ_CP008886.1_1285468_1286305_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|278aa|down_2|NZ_CP008886.1_1286297_1287131_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|338aa|down_3|NZ_CP008886.1_1287130_1288144_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|523aa|down_4|NZ_CP008886.1_1288245_1289814_-	cd08512, PBP2_NikA_DppA_OppA_like_7, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|232aa|down_5|NZ_CP008886.1_1290026_1290722_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|561aa|down_6|NZ_CP008886.1_1290996_1292679_-	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|491aa|down_7|NZ_CP008886.1_1292693_1294166_-	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional	NA|198aa|down_8|NZ_CP008886.1_1294177_1294771_-	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|678aa|down_9|NZ_CP008886.1_1294899_1296933_+	PRK09928, PRK09928, choline transport protein BetT; Provisional
GCF_001700855.1_ASM170085v1	NZ_CP008886	Raoultella ornithinolytica strain A14 chromosome, complete genome	4	4114519-4114636	4	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3	Orphan	AGCACACCCGCTGTGCGCTTTTGTGGTCATACCGCTCG	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3	NA,NA	NA|188aa|up_9|NZ_CP008886.1_4105153_4105717_+	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component	NA|326aa|up_8|NZ_CP008886.1_4105713_4106691_+	TIGR00825, EIIBC-GUT, PTS system, glucitol/sorbitol-specific, IIBC component	NA|121aa|up_7|NZ_CP008886.1_4106704_4107067_+	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA	NA|260aa|up_6|NZ_CP008886.1_4107084_4107864_+	PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional	NA|120aa|up_5|NZ_CP008886.1_4107928_4108288_+	PRK10234, PRK10234, transcriptional regulator GutM	NA|258aa|up_4|NZ_CP008886.1_4108359_4109133_+	PRK10434, srlR, DNA-binding transcriptional repressor	NA|322aa|up_3|NZ_CP008886.1_4109125_4110091_+	PRK11543, gutQ, arabinose-5-phosphate isomerase GutQ	NA|515aa|up_2|NZ_CP008886.1_4110053_4111598_-	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|483aa|up_1|NZ_CP008886.1_4111785_4113234_+	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|378aa|up_0|NZ_CP008886.1_4113230_4114364_+	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|349aa|down_0|NZ_CP008886.1_4114707_4115754_-	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	NA|745aa|down_1|NZ_CP008886.1_4115750_4117985_-	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|176aa|down_2|NZ_CP008886.1_4117997_4118525_-	PRK10330, PRK10330, electron transport protein HydN	NA|338aa|down_3|NZ_CP008886.1_4118672_4119686_-	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism	NA|481aa|down_4|NZ_CP008886.1_4119952_4121395_+	PRK09796, PRK09796, PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional	NA|475aa|down_5|NZ_CP008886.1_4121423_4122848_+	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|157aa|down_6|NZ_CP008886.1_4123491_4123962_-	PRK11544, hycI, hydrogenase 3 maturation protease; Provisional	NA|137aa|down_7|NZ_CP008886.1_4123954_4124365_-	PRK15084, PRK15084, formate hydrogenlyase maturation protein HycH; Provisional	NA|256aa|down_8|NZ_CP008886.1_4124361_4125129_-	COG3260, COG3260, Ni,Fe-hydrogenase III small subunit [Energy production and conversion]	NA|181aa|down_9|NZ_CP008886.1_4125128_4125671_-	PRK12387, PRK12387, formate hydrogenlyase complex iron-sulfur subunit; Provisional
GCF_001700855.1_ASM170085v1	NZ_CP008886	Raoultella ornithinolytica strain A14 chromosome, complete genome	5	5083607-5083752	5	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,csa3	Orphan	CGCTGGCCGGACAGGCGTATCAGGCGCCGTGTCCGGGAATCCCCC	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,csa3	NA|75aa|up_1|NZ_CP008886.1_5082673_5082898_-,NA	NA|614aa|up_9|NZ_CP008886.1_5072415_5074257_-	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|463aa|up_8|NZ_CP008886.1_5074253_5075642_-	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|203aa|up_7|NZ_CP008886.1_5075748_5076357_-	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|379aa|up_6|NZ_CP008886.1_5076738_5077875_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|119aa|up_5|NZ_CP008886.1_5077877_5078234_-	pfam11742, DUF3302, Protein of unknown function (DUF3302)	NA|640aa|up_4|NZ_CP008886.1_5078898_5080818_+	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|383aa|up_3|NZ_CP008886.1_5080940_5082089_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|200aa|up_2|NZ_CP008886.1_5082085_5082685_+	PRK11001, mtlR, MltR family transcriptional regulator	NA|75aa|up_1|NZ_CP008886.1_5082673_5082898_-	NA	NA|121aa|up_0|NZ_CP008886.1_5083173_5083536_+	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|552aa|down_0|NZ_CP008886.1_5084081_5085737_+	PRK10420, PRK10420, L-lactate permease; Provisional	NA|258aa|down_1|NZ_CP008886.1_5085733_5086507_+	PRK10421, PRK10421, DNA-binding transcriptional repressor LldR; Provisional	NA|395aa|down_2|NZ_CP008886.1_5086506_5087691_+	PRK11197, lldD, L-lactate dehydrogenase; Provisional	NA|158aa|down_3|NZ_CP008886.1_5087785_5088259_+	PRK10358, PRK10358, tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL	NA|274aa|down_4|NZ_CP008886.1_5088436_5089258_-	PRK11132, cysE, serine acetyltransferase; Provisional	NA|339aa|down_5|NZ_CP008886.1_5089338_5090355_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|156aa|down_6|NZ_CP008886.1_5090354_5090822_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|84aa|down_7|NZ_CP008886.1_5090880_5091132_-	PRK10638, PRK10638, glutaredoxin 3; Provisional	NA|144aa|down_8|NZ_CP008886.1_5091241_5091673_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|515aa|down_9|NZ_CP008886.1_5091918_5093463_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
