assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	1	830660-830795	1	CRISPRCasFinder	no	DEDDh	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Unclear	GCCTTGCGGAACGCGTTACGGCACGGATGCCTAGAAAG	38	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA,NA|48aa|down_9|NZ_CP014915.1_842356_842500_+	NA|513aa|up_9|NZ_CP014915.1_820844_822383_+	cd01031, EriC, ClC chloride channel EriC	NA|79aa|up_8|NZ_CP014915.1_822476_822713_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|250aa|up_7|NZ_CP014915.1_822800_823550_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|807aa|up_6|NZ_CP014915.1_823568_825989_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|158aa|up_5|NZ_CP014915.1_826016_826490_+	pfam01668, SmpB, SmpB protein	NA|196aa|up_4|NZ_CP014915.1_827043_827631_-	COG4894, COG4894, Uncharacterized conserved protein [Function unknown]	NA|237aa|up_3|NZ_CP014915.1_827748_828459_+	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|330aa|up_2|NZ_CP014915.1_828516_829506_+	PRK09653, eutD, phosphotransacetylase	NA|160aa|up_1|NZ_CP014915.1_829593_830073_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|166aa|up_0|NZ_CP014915.1_830062_830560_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	DEDDh|178aa|down_0|NZ_CP014915.1_831100_831634_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|255aa|down_1|NZ_CP014915.1_831674_832439_-	cd09087, Ape1-like_AP-endo, Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases	NA|303aa|down_2|NZ_CP014915.1_832585_833494_+	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|707aa|down_3|NZ_CP014915.1_833514_835635_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|227aa|down_4|NZ_CP014915.1_835825_836506_-	pfam07099, DUF1361, Protein of unknown function (DUF1361)	NA|284aa|down_5|NZ_CP014915.1_836681_837533_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|324aa|down_6|NZ_CP014915.1_837529_838501_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|down_7|NZ_CP014915.1_838526_839882_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|606aa|down_8|NZ_CP014915.1_840111_841929_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|48aa|down_9|NZ_CP014915.1_842356_842500_+	NA
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	2	1099380-1099516	2	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	GTAGCCAAGAAAGGCGCGGCCTTCAACCAGATGTGGATTTGGT	43	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|57aa|up_5|NZ_CP014915.1_1090972_1091143_-,NA|108aa|down_0|NZ_CP014915.1_1099735_1100059_-,NA|142aa|down_1|NZ_CP014915.1_1100068_1100494_-,NA|89aa|down_2|NZ_CP014915.1_1100508_1100775_-	NA|102aa|up_9|NZ_CP014915.1_1086503_1086809_+	cd11541, NTP-PPase_u4, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|435aa|up_8|NZ_CP014915.1_1087103_1088408_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|461aa|up_7|NZ_CP014915.1_1088407_1089790_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|200aa|up_6|NZ_CP014915.1_1089901_1090501_+	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|57aa|up_5|NZ_CP014915.1_1090972_1091143_-	NA	NA|496aa|up_4|NZ_CP014915.1_1091375_1092863_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|up_3|NZ_CP014915.1_1092870_1093602_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|601aa|up_2|NZ_CP014915.1_1094071_1095874_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|433aa|up_1|NZ_CP014915.1_1095985_1097284_+	PRK12297, obgE, GTPase CgtA; Reviewed	NA|639aa|up_0|NZ_CP014915.1_1097336_1099253_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|108aa|down_0|NZ_CP014915.1_1099735_1100059_-	NA	NA|142aa|down_1|NZ_CP014915.1_1100068_1100494_-	NA	NA|89aa|down_2|NZ_CP014915.1_1100508_1100775_-	NA	NA|315aa|down_3|NZ_CP014915.1_1101034_1101979_+	TIGR02651, Ribonuclease_Z, ribonuclease Z	NA|119aa|down_4|NZ_CP014915.1_1101992_1102349_+	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown]	NA|776aa|down_5|NZ_CP014915.1_1102345_1104673_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|173aa|down_6|NZ_CP014915.1_1104688_1105207_+	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|123aa|down_7|NZ_CP014915.1_1106012_1106381_-	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|138aa|down_8|NZ_CP014915.1_1106316_1106730_-	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains	NA|183aa|down_9|NZ_CP014915.1_1107364_1107913_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	3	1166174-1166304	3	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	CGAAACGCGTTTCGGAAAACAGAAAGCTGCGTGTAA	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|56aa|up_2|NZ_CP014915.1_1163524_1163692_-,NA|117aa|down_5|NZ_CP014915.1_1170912_1171263_+,NA|109aa|down_9|NZ_CP014915.1_1174290_1174617_+	NA|61aa|up_9|NZ_CP014915.1_1154185_1154368_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|304aa|up_8|NZ_CP014915.1_1154494_1155406_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|781aa|up_7|NZ_CP014915.1_1155558_1157901_+	PRK07121, PRK07121, FAD-binding protein	NA|318aa|up_6|NZ_CP014915.1_1158470_1159424_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|427aa|up_5|NZ_CP014915.1_1160675_1161956_+	cd06198, FNR_like_3, NAD(P) binding domain of  ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain	NA|140aa|up_4|NZ_CP014915.1_1162010_1162430_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|283aa|up_3|NZ_CP014915.1_1162449_1163298_-	PRK08263, PRK08263, short chain dehydrogenase; Provisional	NA|56aa|up_2|NZ_CP014915.1_1163524_1163692_-	NA	NA|255aa|up_1|NZ_CP014915.1_1164102_1164867_-	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	NA|135aa|up_0|NZ_CP014915.1_1165093_1165498_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|249aa|down_0|NZ_CP014915.1_1166387_1167134_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|192aa|down_1|NZ_CP014915.1_1167317_1167893_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|353aa|down_2|NZ_CP014915.1_1167967_1169026_-	pfam18848, baeRF_family6, Bacterial archaeo-eukaryotic release factor family 6	NA|303aa|down_3|NZ_CP014915.1_1169122_1170031_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|211aa|down_4|NZ_CP014915.1_1170064_1170697_-	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|117aa|down_5|NZ_CP014915.1_1170912_1171263_+	NA	NA|213aa|down_6|NZ_CP014915.1_1171595_1172234_+	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|320aa|down_7|NZ_CP014915.1_1172257_1173217_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|248aa|down_8|NZ_CP014915.1_1173216_1173960_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|109aa|down_9|NZ_CP014915.1_1174290_1174617_+	NA
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	4	1759617-1759741	4	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	CAAAAAATAAAATCAAAGTTCAGAGAGCGGAAGAAAGCGT	40	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|278aa|up_3|NZ_CP014915.1_1756026_1756860_-,NA|158aa|down_8|NZ_CP014915.1_1768696_1769170_-	NA|473aa|up_9|NZ_CP014915.1_1745257_1746676_-	pfam03577, Peptidase_C69, Peptidase family C69	NA|451aa|up_8|NZ_CP014915.1_1746848_1748201_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|354aa|up_7|NZ_CP014915.1_1748722_1749784_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|662aa|up_6|NZ_CP014915.1_1749937_1751923_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|524aa|up_5|NZ_CP014915.1_1752155_1753727_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|675aa|up_4|NZ_CP014915.1_1753989_1756014_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|278aa|up_3|NZ_CP014915.1_1756026_1756860_-	NA	NA|139aa|up_2|NZ_CP014915.1_1756922_1757339_-	cd02171, G3P_Cytidylyltransferase, glycerol-3-phosphate cytidylyltransferase	NA|382aa|up_1|NZ_CP014915.1_1757484_1758630_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|183aa|up_0|NZ_CP014915.1_1758817_1759366_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|273aa|down_0|NZ_CP014915.1_1759847_1760666_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|150aa|down_1|NZ_CP014915.1_1760741_1761191_+	PRK07308, PRK07308, flavodoxin; Validated	NA|355aa|down_2|NZ_CP014915.1_1761246_1762311_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|373aa|down_3|NZ_CP014915.1_1762323_1763442_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|314aa|down_4|NZ_CP014915.1_1764033_1764975_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|137aa|down_5|NZ_CP014915.1_1765045_1765456_+	pfam04138, GtrA, GtrA-like protein	NA|509aa|down_6|NZ_CP014915.1_1765766_1767293_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|320aa|down_7|NZ_CP014915.1_1767285_1768245_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|158aa|down_8|NZ_CP014915.1_1768696_1769170_-	NA	NA|152aa|down_9|NZ_CP014915.1_1769350_1769806_+	cd00293, USP_Like, Usp: Universal stress protein family
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	5	2416406-2416543	5	CRISPRCasFinder	no	RT	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Unclear	AAACGCGTTTCGGAAAACAGAAAGCTGCACGTAAGCCAACTCTG	44	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA,NA|136aa|down_0|NZ_CP014915.1_2416719_2417127_+,NA|126aa|down_8|NZ_CP014915.1_2427062_2427440_-,NA|159aa|down_9|NZ_CP014915.1_2428326_2428803_-	NA|453aa|up_9|NZ_CP014915.1_2407400_2408759_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|77aa|up_8|NZ_CP014915.1_2408826_2409057_-	cd13709, PBP2_YxeM, Substrate binding domain of an ABC transporter YxeMNO; the type 2 periplasmic binding protein fold	NA|187aa|up_7|NZ_CP014915.1_2409205_2409766_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|304aa|up_6|NZ_CP014915.1_2409818_2410730_-	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|362aa|up_5|NZ_CP014915.1_2410874_2411960_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|179aa|up_4|NZ_CP014915.1_2412660_2413197_+	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|181aa|up_3|NZ_CP014915.1_2413256_2413799_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|159aa|up_2|NZ_CP014915.1_2413891_2414368_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|262aa|up_1|NZ_CP014915.1_2414522_2415308_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|215aa|up_0|NZ_CP014915.1_2415440_2416085_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|136aa|down_0|NZ_CP014915.1_2416719_2417127_+	NA	NA|401aa|down_1|NZ_CP014915.1_2417269_2418472_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|319aa|down_2|NZ_CP014915.1_2418658_2419615_+	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|184aa|down_3|NZ_CP014915.1_2419825_2420377_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|571aa|down_4|NZ_CP014915.1_2420479_2422192_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|541aa|down_5|NZ_CP014915.1_2422707_2424330_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|160aa|down_6|NZ_CP014915.1_2424553_2425033_+	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	RT|461aa|down_7|NZ_CP014915.1_2425122_2426505_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|126aa|down_8|NZ_CP014915.1_2427062_2427440_-	NA	NA|159aa|down_9|NZ_CP014915.1_2428326_2428803_-	NA
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	6	2505570-2505689	6	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	TTTTCTCTAGTGGAAACGCGCTCAGGAAGG	30	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA,NA	NA|283aa|up_9|NZ_CP014915.1_2492938_2493787_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|312aa|up_8|NZ_CP014915.1_2493786_2494722_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|367aa|up_7|NZ_CP014915.1_2494702_2495803_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|331aa|up_6|NZ_CP014915.1_2496017_2497010_-	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|244aa|up_5|NZ_CP014915.1_2497974_2498706_-	pfam16069, DUF4811, Domain of unknown function (DUF4811)	NA|486aa|up_4|NZ_CP014915.1_2498702_2500160_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|149aa|up_3|NZ_CP014915.1_2500564_2501011_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|138aa|up_2|NZ_CP014915.1_2501293_2501707_-	cd08437, PBP2_MleR, The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold	NA|168aa|up_1|NZ_CP014915.1_2501681_2502185_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|453aa|up_0|NZ_CP014915.1_2504013_2505372_+	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like	NA|448aa|down_0|NZ_CP014915.1_2505789_2507133_-	PRK05313, PRK05313, hypothetical protein; Provisional	NA|90aa|down_1|NZ_CP014915.1_2507142_2507412_-	PRK00194, PRK00194, ACT domain-containing protein	NA|380aa|down_2|NZ_CP014915.1_2508253_2509393_-	PRK02936, argD, acetylornithine transaminase	NA|250aa|down_3|NZ_CP014915.1_2509401_2510151_-	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|405aa|down_4|NZ_CP014915.1_2510164_2511379_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|345aa|down_5|NZ_CP014915.1_2511402_2512437_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|315aa|down_6|NZ_CP014915.1_2513000_2513945_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|477aa|down_7|NZ_CP014915.1_2514294_2515725_-	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|332aa|down_8|NZ_CP014915.1_2516163_2517159_-	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase	NA|503aa|down_9|NZ_CP014915.1_2517148_2518657_-	cd02549, Peptidase_C39A, A sub-family of peptidase family C39
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	7	2556578-2557537	7,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9,RT	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Type II-A,Type II-B,Type II-C	GCTTTGAACCTCATTGATTTGATATTCATCTAAAAC,GCTTTGAACCTCATTGATTTGATATTCATCTAAAAC,GCTTTGAACCTCATTGATTTGATATTCATCTAAAAC	36,36,36	2	2	2557406-2557435|2557407-2557436	NZ_CP014915.1_225152-225123|NZ_CP014915.1_225152-225123	NA:NA:NA	14,14,14	14	TypeII-A,TypeII-B,TypeII-C	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA,NA	NA|435aa|up_9|NZ_CP014915.1_2541509_2542814_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|540aa|up_8|NZ_CP014915.1_2543165_2544785_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|274aa|up_7|NZ_CP014915.1_2544836_2545658_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|377aa|up_6|NZ_CP014915.1_2546052_2547183_-	PRK06233, PRK06233, vitamin B12 independent methionine synthase	NA|163aa|up_5|NZ_CP014915.1_2547657_2548146_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|220aa|up_4|NZ_CP014915.1_2548701_2549361_-	cd19364, TenA_C_BsTenA-like, TenA_C proteins similar to Bacillus subtilis TenA	NA|256aa|up_3|NZ_CP014915.1_2549599_2550367_-	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|236aa|up_2|NZ_CP014915.1_2550450_2551158_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|242aa|up_1|NZ_CP014915.1_2554273_2554999_+	PRK12376, PRK12376, putative translaldolase; Provisional	NA|84aa|up_0|NZ_CP014915.1_2555983_2556235_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csn2|222aa|down_0|NZ_CP014915.1_2557564_2558230_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|107aa|down_1|NZ_CP014915.1_2558226_2558547_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP014915.1_2558509_2559415_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1369aa|down_3|NZ_CP014915.1_2559612_2563719_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|299aa|down_4|NZ_CP014915.1_2564019_2564916_+	cd01020, TroA_b, Metal binding protein TroA_b	NA|186aa|down_5|NZ_CP014915.1_2565154_2565712_+	PRK13690, PRK13690, hypothetical protein; Provisional	NA|188aa|down_6|NZ_CP014915.1_2566027_2566591_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	RT|461aa|down_7|NZ_CP014915.1_2566666_2568049_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|575aa|down_8|NZ_CP014915.1_2568808_2570533_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|629aa|down_9|NZ_CP014915.1_2570532_2572419_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	8	2715335-2715406	8	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	TAAATAGTAATTGTTACGTTTTA	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|182aa|up_9|NZ_CP014915.1_2703903_2704449_-,NA|142aa|up_8|NZ_CP014915.1_2704481_2704907_-,NA|57aa|down_1|NZ_CP014915.1_2716095_2716266_-,NA|124aa|down_9|NZ_CP014915.1_2726123_2726495_+	NA|182aa|up_9|NZ_CP014915.1_2703903_2704449_-	NA	NA|142aa|up_8|NZ_CP014915.1_2704481_2704907_-	NA	NA|1023aa|up_7|NZ_CP014915.1_2705105_2708174_-	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c	NA|188aa|up_6|NZ_CP014915.1_2708170_2708734_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|309aa|up_5|NZ_CP014915.1_2708997_2709924_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|318aa|up_4|NZ_CP014915.1_2709926_2710880_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|143aa|up_3|NZ_CP014915.1_2710896_2711325_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|148aa|up_2|NZ_CP014915.1_2711614_2712058_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|394aa|up_1|NZ_CP014915.1_2712570_2713752_-	TIGR02358, purine-cytosine_transport_protein, putative hydroxymethylpyrimidine transporter CytX	NA|306aa|up_0|NZ_CP014915.1_2714394_2715312_-	cd01020, TroA_b, Metal binding protein TroA_b	NA|90aa|down_0|NZ_CP014915.1_2715696_2715966_+	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed	NA|57aa|down_1|NZ_CP014915.1_2716095_2716266_-	NA	NA|261aa|down_2|NZ_CP014915.1_2716307_2717090_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|322aa|down_3|NZ_CP014915.1_2717070_2718036_-	pfam01032, FecCD, FecCD transport family	NA|294aa|down_4|NZ_CP014915.1_2718109_2718991_-	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|288aa|down_5|NZ_CP014915.1_2718992_2719856_-	cd06920, NEAT, NEAr Transport domain, a component of cell surface proteins	NA|424aa|down_6|NZ_CP014915.1_2719856_2721128_-	cd06920, NEAT, NEAr Transport domain, a component of cell surface proteins	NA|383aa|down_7|NZ_CP014915.1_2721463_2722612_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|154aa|down_8|NZ_CP014915.1_2722641_2723103_+	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|124aa|down_9|NZ_CP014915.1_2726123_2726495_+	NA
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	9	2887018-2887137	9	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	CCTTTCTCGGCAGCTGTGCCGAAACGAGTTCCA	33	1	20	2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104|2887051-2887104	NZ_CP014915.1_394144-394197|NZ_CP014915.1_2590004-2590057|NZ_CP014915.1_1137014-1136961|NZ_CP014915.1_1381184-1381237|NZ_CP014915.1_1671914-1671967|NZ_CP014915.1_1727285-1727338|NZ_CP014915.1_1987798-1987851|NZ_CP014915.1_2300180-2300233|NZ_CP014915.1_3027010-3027063|NZ_CP014915.1_3169581-3169634|NZ_CP014915.1_466655-466602|NZ_CP014915.1_3109470-3109417|NZ_CP014915.1_201947-202000|NZ_CP014915.1_2812202-2812255|NZ_CP014915.1_274805-274752|NZ_CP014915.1_354744-354691|NZ_CP014915.1_1035638-1035585|NZ_CP014915.1_1692632-1692579|NZ_CP014915.1_3215732-3215679|NZ_CP014915.1_3435736-3435683	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA,NA	NA|401aa|up_9|NZ_CP014915.1_2875569_2876772_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|156aa|up_8|NZ_CP014915.1_2876774_2877242_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|343aa|up_7|NZ_CP014915.1_2877528_2878557_+	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein	NA|255aa|up_6|NZ_CP014915.1_2878584_2879349_+	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|267aa|up_5|NZ_CP014915.1_2879345_2880146_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|287aa|up_4|NZ_CP014915.1_2880142_2881003_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|124aa|up_3|NZ_CP014915.1_2883287_2883659_+	COG4633, COG4633, Plastocyanin domain containing protein [General function prediction only]	NA|92aa|up_2|NZ_CP014915.1_2883674_2883950_+	pfam13473, Cupredoxin_1, Cupredoxin-like domain	NA|644aa|up_1|NZ_CP014915.1_2883946_2885878_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|261aa|up_0|NZ_CP014915.1_2885935_2886718_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|333aa|down_0|NZ_CP014915.1_2887242_2888241_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|397aa|down_1|NZ_CP014915.1_2888717_2889908_+	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|268aa|down_2|NZ_CP014915.1_2889956_2890760_+	pfam06541, ABC_trans_CmpB, Putative ABC-transporter type IV	NA|718aa|down_3|NZ_CP014915.1_2890866_2893020_-	TIGR03715, cell_surface_protein_precursor, KxYKxGKxW signal peptide	NA|327aa|down_4|NZ_CP014915.1_2893647_2894628_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|368aa|down_5|NZ_CP014915.1_2894651_2895755_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|654aa|down_6|NZ_CP014915.1_2896156_2898118_-	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1	NA|222aa|down_7|NZ_CP014915.1_2898854_2899520_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|147aa|down_8|NZ_CP014915.1_2899641_2900082_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|291aa|down_9|NZ_CP014915.1_2900145_2901018_-	cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the bifunctional enzyme
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	10	3086360-3086465	10	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	TTGGCATCATAGCCGTAACGTGTTCC	26	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|161aa|up_7|NZ_CP014915.1_3075503_3075986_+,NA|95aa|down_9|NZ_CP014915.1_3097941_3098226_+	NA|148aa|up_9|NZ_CP014915.1_3074487_3074931_-	smart00850, LytTR, LytTr DNA-binding domain	NA|136aa|up_8|NZ_CP014915.1_3075088_3075496_+	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|161aa|up_7|NZ_CP014915.1_3075503_3075986_+	NA	NA|403aa|up_6|NZ_CP014915.1_3076453_3077662_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|338aa|up_5|NZ_CP014915.1_3077658_3078672_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|143aa|up_4|NZ_CP014915.1_3079336_3079765_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|235aa|up_3|NZ_CP014915.1_3079774_3080479_+	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|463aa|up_2|NZ_CP014915.1_3081762_3083151_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|151aa|up_1|NZ_CP014915.1_3083547_3084000_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|675aa|up_0|NZ_CP014915.1_3084099_3086124_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|471aa|down_0|NZ_CP014915.1_3086661_3088074_+	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|157aa|down_1|NZ_CP014915.1_3088126_3088597_-	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|79aa|down_2|NZ_CP014915.1_3089372_3089609_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|187aa|down_3|NZ_CP014915.1_3089634_3090195_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|96aa|down_4|NZ_CP014915.1_3090237_3090525_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|891aa|down_5|NZ_CP014915.1_3090936_3093609_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|649aa|down_6|NZ_CP014915.1_3093914_3095861_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|392aa|down_7|NZ_CP014915.1_3095879_3097055_-	PRK00064, recF, recombination protein F; Reviewed	NA|82aa|down_8|NZ_CP014915.1_3097057_3097303_-	TIGR02988, YaaA_near_RecF, S4 domain protein YaaA	NA|95aa|down_9|NZ_CP014915.1_3097941_3098226_+	NA
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	11	3276143-3276273	11	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	GCTTACATGCAGCTTTCTGTTTTCCGGAACTCGTTT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|101aa|up_7|NZ_CP014915.1_3266326_3266629_+,NA	NA|211aa|up_9|NZ_CP014915.1_3264986_3265619_+	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism]	NA|161aa|up_8|NZ_CP014915.1_3265680_3266163_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|101aa|up_7|NZ_CP014915.1_3266326_3266629_+	NA	NA|373aa|up_6|NZ_CP014915.1_3266719_3267838_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|496aa|up_5|NZ_CP014915.1_3268192_3269680_+	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter	NA|259aa|up_4|NZ_CP014915.1_3269869_3270646_+	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs	NA|514aa|up_3|NZ_CP014915.1_3271340_3272882_+	cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases	NA|272aa|up_2|NZ_CP014915.1_3273018_3273834_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|337aa|up_1|NZ_CP014915.1_3273955_3274966_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|285aa|up_0|NZ_CP014915.1_3275206_3276061_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|145aa|down_0|NZ_CP014915.1_3276479_3276914_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|146aa|down_1|NZ_CP014915.1_3276930_3277368_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|163aa|down_2|NZ_CP014915.1_3277426_3277915_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|465aa|down_3|NZ_CP014915.1_3278119_3279514_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|416aa|down_4|NZ_CP014915.1_3279939_3281187_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|195aa|down_5|NZ_CP014915.1_3281404_3281989_+	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|457aa|down_6|NZ_CP014915.1_3282410_3283781_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|207aa|down_7|NZ_CP014915.1_3283887_3284508_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|199aa|down_8|NZ_CP014915.1_3284909_3285506_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|239aa|down_9|NZ_CP014915.1_3286550_3287267_-	pfam04474, DUF554, Protein of unknown function (DUF554)
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	12	3289345-3289480	12	CRISPRCasFinder	no		RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Orphan	GCATTTTTGCCAGAGTTGGCTTACATGCAGCTTTCTGTTTT	41	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA,NA|257aa|down_8|NZ_CP014915.1_3297161_3297932_+	NA|163aa|up_9|NZ_CP014915.1_3277426_3277915_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|465aa|up_8|NZ_CP014915.1_3278119_3279514_+	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|416aa|up_7|NZ_CP014915.1_3279939_3281187_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|195aa|up_6|NZ_CP014915.1_3281404_3281989_+	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|457aa|up_5|NZ_CP014915.1_3282410_3283781_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|207aa|up_4|NZ_CP014915.1_3283887_3284508_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|199aa|up_3|NZ_CP014915.1_3284909_3285506_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|239aa|up_2|NZ_CP014915.1_3286550_3287267_-	pfam04474, DUF554, Protein of unknown function (DUF554)	NA|379aa|up_1|NZ_CP014915.1_3287610_3288747_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|138aa|up_0|NZ_CP014915.1_3288769_3289183_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|157aa|down_0|NZ_CP014915.1_3289567_3290038_+	PRK02487, PRK02487, heme-degrading domain-containing protein	NA|288aa|down_1|NZ_CP014915.1_3290114_3290978_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|200aa|down_2|NZ_CP014915.1_3291421_3292021_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|325aa|down_3|NZ_CP014915.1_3292221_3293196_+	cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)	NA|182aa|down_4|NZ_CP014915.1_3293608_3294154_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|279aa|down_5|NZ_CP014915.1_3294294_3295131_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|318aa|down_6|NZ_CP014915.1_3295143_3296097_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|280aa|down_7|NZ_CP014915.1_3296168_3297008_-	PRK06940, PRK06940, short chain dehydrogenase; Provisional	NA|257aa|down_8|NZ_CP014915.1_3297161_3297932_+	NA	NA|429aa|down_9|NZ_CP014915.1_3300423_3301710_-	PRK00077, eno, enolase; Provisional
GCF_001702175.1_ASM170217v1	NZ_CP014915	Lactobacillus paracollinoides strain TMW 1.1994 chromosome, complete genome	13	3461542-3461627	13	CRISPRCasFinder	no	cas14j	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j	Unclear	TAAGATACTTAAAGTTTCTTATT	23	0	0	NA	NA	NA	1	1	TypeV	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|112aa|up_9|NZ_CP014915.1_3446143_3446479_+,NA|53aa|up_3|NZ_CP014915.1_3455704_3455863_-,NA	NA|112aa|up_9|NZ_CP014915.1_3446143_3446479_+	NA	NA|371aa|up_8|NZ_CP014915.1_3446805_3447918_+	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|277aa|up_7|NZ_CP014915.1_3449475_3450306_+	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|453aa|up_6|NZ_CP014915.1_3450523_3451882_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|407aa|up_5|NZ_CP014915.1_3452044_3453265_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|459aa|up_4|NZ_CP014915.1_3453467_3454844_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|53aa|up_3|NZ_CP014915.1_3455704_3455863_-	NA	NA|655aa|up_2|NZ_CP014915.1_3455875_3457840_-	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|650aa|up_1|NZ_CP014915.1_3458179_3460129_-	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	NA|201aa|up_0|NZ_CP014915.1_3460919_3461522_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|501aa|down_0|NZ_CP014915.1_3461639_3463142_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|60aa|down_1|NZ_CP014915.1_3463188_3463368_+	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|226aa|down_2|NZ_CP014915.1_3463324_3464002_+	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs	NA|390aa|down_3|NZ_CP014915.1_3464511_3465681_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|182aa|down_4|NZ_CP014915.1_3465694_3466240_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|317aa|down_5|NZ_CP014915.1_3466544_3467495_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|462aa|down_6|NZ_CP014915.1_3467831_3469217_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|463aa|down_7|NZ_CP014915.1_3469496_3470885_+	PRK06481, PRK06481, flavocytochrome c	NA|157aa|down_8|NZ_CP014915.1_3470998_3471469_-	COG5015, COG5015, Uncharacterized conserved protein [Function unknown]	NA|294aa|down_9|NZ_CP014915.1_3471681_3472563_-	cd01944, YegV_kinase_like, YegV-like sugar kinase
GCF_001702175.1_ASM170217v1	NZ_CP014916	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-1, complete sequence	1	818-975	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTT	38	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA,NA|62aa|down_1|NZ_CP014916.1_2234_2420_+,NA|93aa|down_2|NZ_CP014916.1_2535_2814_-,NA|76aa|down_3|NZ_CP014916.1_2836_3064_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|94aa|down_0|NZ_CP014916.1_1906_2188_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|62aa|down_1|NZ_CP014916.1_2234_2420_+	NA	NA|93aa|down_2|NZ_CP014916.1_2535_2814_-	NA	NA|76aa|down_3|NZ_CP014916.1_2836_3064_-	NA	NA|687aa|down_4|NZ_CP014916.1_3315_5376_+	pfam03389, MobA_MobL, MobA/MobL family	NA|233aa|down_5|NZ_CP014916.1_7397_8096_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|306aa|down_6|NZ_CP014916.1_8120_9038_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|132aa|down_7|NZ_CP014916.1_10332_10728_+	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|447aa|down_8|NZ_CP014916.1_10827_12168_+	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|255aa|down_9|NZ_CP014916.1_12634_13399_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_001702175.1_ASM170217v1	NZ_CP014918	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-3, complete sequence	1	5506-5662	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTGCGCGCAGAACTGTAAATTCTACAGT	37	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|92aa|up_0|NZ_CP014918.1_3911_4187_+,NA|62aa|down_1|NZ_CP014918.1_6749_6935_+,NA|93aa|down_3|NZ_CP014918.1_7601_7880_-,NA|366aa|down_4|NZ_CP014918.1_10627_11725_+,NA|64aa|down_5|NZ_CP014918.1_11802_11994_+,NA|30aa|down_7|NZ_CP014918.1_14303_14393_-,NA|96aa|down_8|NZ_CP014918.1_15474_15762_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|330aa|up_2|NZ_CP014918.1_1227_2217_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|350aa|up_1|NZ_CP014918.1_2859_3909_+	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|92aa|up_0|NZ_CP014918.1_3911_4187_+	NA	NA|94aa|down_0|NZ_CP014918.1_6421_6703_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|62aa|down_1|NZ_CP014918.1_6749_6935_+	NA	NA|227aa|down_2|NZ_CP014918.1_6931_7612_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|93aa|down_3|NZ_CP014918.1_7601_7880_-	NA	NA|366aa|down_4|NZ_CP014918.1_10627_11725_+	NA	NA|64aa|down_5|NZ_CP014918.1_11802_11994_+	NA	NA|118aa|down_6|NZ_CP014918.1_11974_12328_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|30aa|down_7|NZ_CP014918.1_14303_14393_-	NA	NA|96aa|down_8|NZ_CP014918.1_15474_15762_+	NA	NA|161aa|down_9|NZ_CP014918.1_15858_16341_+	pfam00582, Usp, Universal stress protein family
GCF_001702175.1_ASM170217v1	NZ_CP014919	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-4, complete sequence	1	2197-2353	1	CRISPRCasFinder	no			Orphan	TGAACCCCTTGGTACAAGCGGACTTCTCAAAAAGAGA	37	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|83aa|up_0|NZ_CP014919.1_926_1175_+,NA|93aa|down_2|NZ_CP014919.1_5106_5385_-,NA|76aa|down_3|NZ_CP014919.1_5407_5635_-,NA|214aa|down_5|NZ_CP014919.1_8017_8659_+,NA|137aa|down_6|NZ_CP014919.1_8674_9085_+,NA|77aa|down_8|NZ_CP014919.1_11348_11579_+,NA|375aa|down_9|NZ_CP014919.1_11568_12693_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|269aa|up_1|NZ_CP014919.1_106_913_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|83aa|up_0|NZ_CP014919.1_926_1175_+	NA	NA|94aa|down_0|NZ_CP014919.1_3158_3440_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|342aa|down_1|NZ_CP014919.1_3593_4619_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|93aa|down_2|NZ_CP014919.1_5106_5385_-	NA	NA|76aa|down_3|NZ_CP014919.1_5407_5635_-	NA	NA|688aa|down_4|NZ_CP014919.1_5887_7951_+	pfam03389, MobA_MobL, MobA/MobL family	NA|214aa|down_5|NZ_CP014919.1_8017_8659_+	NA	NA|137aa|down_6|NZ_CP014919.1_8674_9085_+	NA	NA|712aa|down_7|NZ_CP014919.1_9091_11227_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|77aa|down_8|NZ_CP014919.1_11348_11579_+	NA	NA|375aa|down_9|NZ_CP014919.1_11568_12693_+	NA
GCF_001702175.1_ASM170217v1	NZ_CP014920	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence	1	12541-12698	1	CRISPRCasFinder	no			Orphan	CAAACCCTTGCTACGAGCGAAAATCCGAAAATCGGACA	38	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,PrimPol,WYL,cas14j,c2c9_V-U4	NA|71aa|up_9|NZ_CP014920.1_1723_1936_-,NA|93aa|up_8|NZ_CP014920.1_5729_6008_+,NA|84aa|up_6|NZ_CP014920.1_7190_7442_-,NA|99aa|up_5|NZ_CP014920.1_7472_7769_-,NA|70aa|up_4|NZ_CP014920.1_7755_7965_-,NA|54aa|up_3|NZ_CP014920.1_8008_8170_+,NA|307aa|up_1|NZ_CP014920.1_9700_10621_-,NA|60aa|down_0|NZ_CP014920.1_13512_13692_+,NA|48aa|down_5|NZ_CP014920.1_16903_17047_+	NA|71aa|up_9|NZ_CP014920.1_1723_1936_-	NA	NA|93aa|up_8|NZ_CP014920.1_5729_6008_+	NA	NA|225aa|up_7|NZ_CP014920.1_6460_7135_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|84aa|up_6|NZ_CP014920.1_7190_7442_-	NA	NA|99aa|up_5|NZ_CP014920.1_7472_7769_-	NA	NA|70aa|up_4|NZ_CP014920.1_7755_7965_-	NA	NA|54aa|up_3|NZ_CP014920.1_8008_8170_+	NA	NA|267aa|up_2|NZ_CP014920.1_8478_9278_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|307aa|up_1|NZ_CP014920.1_9700_10621_-	NA	NA|172aa|up_0|NZ_CP014920.1_11011_11527_-	pfam16046, FAM76, FAM76 protein	NA|60aa|down_0|NZ_CP014920.1_13512_13692_+	NA	NA|196aa|down_1|NZ_CP014920.1_14016_14604_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|88aa|down_2|NZ_CP014920.1_14681_14945_+	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|116aa|down_3|NZ_CP014920.1_14944_15292_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|398aa|down_4|NZ_CP014920.1_15406_16600_-	cd17494, RMtype1_S_Sma198ORF994P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Streptococcus macedonicus ACA-DC 198 S subunit (S1	NA|48aa|down_5|NZ_CP014920.1_16903_17047_+	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
