The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	4406628	2937310	2976650	4406628	terminase,capsid,tRNA,integrase,protease,head	Mycobacterium_phage(30.0%)	47	2966111:2966138	2976803:2976830
WP_003413486.1|2937310_2939389_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2939497_2939725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031659639.1|2939721_2941107_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2941451_2941952_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2941968_2942409_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2942555_2943233_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2943217_2943571_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2943583_2944009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901438.1|2944005_2944680_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2944757_2945579_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2945714_2946608_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2946610_2947429_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2947443_2948625_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2948683_2949115_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2949628_2950870_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2951179_2951542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003902322.1|2951888_2953013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2953014_2953554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2953693_2954992_+	RNA-splicing ligase RtcB	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2955030_2955312_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2955456_2955942_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2955968_2956226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2956226_2958563_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2958591_2958834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2958834_2959512_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2959707_2960364_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2960526_2960973_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2961147_2961480_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2961599_2961959_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2962060_2962519_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2962654_2963035_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2963031_2964528_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2964717_2964954_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2965026_2965200_+	hypothetical protein	NA	NA	NA	NA	NA
2966111:2966138	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2966244_2966676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2966672_2967671_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2967684_2968149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003901443.1|2969626_2971066_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2971073_2971607_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2971759_2972386_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2972417_2972741_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2972820_2973066_-	antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2973062_2974490_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2974491_2974884_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899418.1|2974880_2975141_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003900543.1|2975157_2975520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2975522_2976650_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2976803:2976830	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP016794	Mycobacterium tuberculosis strain SCAID 320.0 chromosome, complete genome	4406628	3709792	3799886	4406628	tRNA,transposase	Burkholderia_virus(28.57%)	56	NA	NA
WP_087902221.1|3709792_3711054_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711347_3711509_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711530_3713060_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3712992_3713931_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3713939_3715307_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715375_3716593_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3716688_3718197_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718193_3719345_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719535_3720381_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3720855_3721296_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721329_3722199_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722219_3723230_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723514_3724147_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724213_3725443_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3725725_3727075_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727086_3728226_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728222_3728954_+	methyltransferase	NA	NA	NA	NA	NA
WP_031648820.1|3738170_3744110_-	PE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3744539_3744797_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003901612.1|3745052_3754526_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3755151_3755598_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_016810328.1|3755634_3756453_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3756669_3756957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417738.1|3768686_3769481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3769562_3769934_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_071854233.1|3769831_3770242_-	FAD-binding protein	NA	NA	NA	NA	NA
WP_003417741.1|3770076_3770337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3770451_3770841_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3770854_3771148_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3771144_3771990_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3772113_3772389_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3772385_3772643_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3772684_3773875_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3773991_3774360_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3774356_3774908_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3774914_3775496_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3775476_3775845_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3775822_3776215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003901616.1|3776211_3778842_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003901617.1|3779077_3779542_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3779908_3781684_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3781684_3782329_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3782327_3782762_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3782850_3786090_-	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3786281_3787622_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3787663_3788839_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3788892_3788997_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3789075_3789717_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3789717_3789966_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3789970_3791398_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3791505_3792159_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3792197_3793703_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3793707_3794598_-	diterpene synthase	NA	NA	NA	NA	NA
WP_079121318.1|3794606_3796382_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003417912.1|3797194_3798184_-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_087902221.1|3798625_3799886_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
